RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 GOLGA6L6A8MZA4 724 aa22.46■■□□□ 1.19
NPHP4-209ENST00000489180 RCAN3Q9UKA8 241 aa22.46■■□□□ 1.19
NPHP4-209ENST00000489180 GZF1Q9H116 711 aaPredicted RBP22.46■■□□□ 1.19
NPHP4-209ENST00000489180 KTN1Q86UP2 1357 aaKnown RBP22.45■■□□□ 1.19
NPHP4-209ENST00000489180 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
NPHP4-209ENST00000489180 SLKQ9H2G2 1235 aaPredicted RBP22.45■■□□□ 1.18
NPHP4-209ENST00000489180 PKD2Q13563 968 aa22.45■■□□□ 1.18
NPHP4-209ENST00000489180 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
NPHP4-209ENST00000489180 ARHGAP35Q9NRY4 1499 aa22.42■■□□□ 1.18
NPHP4-209ENST00000489180 CUX2O14529 1486 aa22.42■■□□□ 1.18
NPHP4-209ENST00000489180 VPS8Q8N3P4 1428 aa22.42■■□□□ 1.18
NPHP4-209ENST00000489180 RAB3GAP2Q9H2M9 1393 aa22.41■■□□□ 1.18
NPHP4-209ENST00000489180 DRC7Q8IY82 874 aa22.39■■□□□ 1.18
NPHP4-209ENST00000489180 MCCP23508 829 aa22.39■■□□□ 1.17
NPHP4-209ENST00000489180 CHAF1AQ13111 956 aaPredicted RBP22.38■■□□□ 1.17
NPHP4-209ENST00000489180 STK26Q9P289 416 aa22.37■■□□□ 1.17
NPHP4-209ENST00000489180 ABCC8Q09428 1581 aa22.36■■□□□ 1.17
NPHP4-209ENST00000489180 ITPRIPQ8IWB1 547 aa22.36■■□□□ 1.17
NPHP4-209ENST00000489180 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.36■■□□□ 1.17
NPHP4-209ENST00000489180 KANK1Q14678 1352 aa22.36■■□□□ 1.17
NPHP4-209ENST00000489180 ARID3AQ99856 593 aa22.35■■□□□ 1.17
NPHP4-209ENST00000489180 TCERG1O14776 1098 aaKnown RBP22.34■■□□□ 1.17
NPHP4-209ENST00000489180 NRDCO43847 1150 aa22.34■■□□□ 1.17
NPHP4-209ENST00000489180 NPHP1O15259 732 aa22.34■■□□□ 1.17
NPHP4-209ENST00000489180 ROCK2O75116 1388 aaKnown RBP22.34■■□□□ 1.17
NPHP4-209ENST00000489180 MPHOSPH9Q99550 1183 aa22.34■■□□□ 1.17
NPHP4-209ENST00000489180 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.17
NPHP4-209ENST00000489180 MLECQ14165 292 aa22.33■■□□□ 1.16
NPHP4-209ENST00000489180 U2AF1L5P0DN76 240 aaPredicted RBP22.32■■□□□ 1.16
NPHP4-209ENST00000489180 U2AF1Q01081 240 aaKnown RBP eCLIP22.32■■□□□ 1.16
NPHP4-209ENST00000489180 AMER1Q5JTC6 1135 aaPredicted RBP22.32■■□□□ 1.16
NPHP4-209ENST00000489180 NACADO15069 1562 aa22.31■■□□□ 1.16
NPHP4-209ENST00000489180 MFAP1P55081 439 aaKnown RBP22.3■■□□□ 1.16
NPHP4-209ENST00000489180 GOLGA2Q08379 1002 aa22.3■■□□□ 1.16
NPHP4-209ENST00000489180 RWDD1Q9H446 243 aaPredicted RBP22.3■■□□□ 1.16
NPHP4-209ENST00000489180 RALBP1Q15311 655 aa22.29■■□□□ 1.16
NPHP4-209ENST00000489180 IPO9Q96P70 1041 aaKnown RBP22.29■■□□□ 1.16
NPHP4-209ENST00000489180 GBP4Q96PP9 640 aa22.29■■□□□ 1.16
NPHP4-209ENST00000489180 IPO8O15397 1037 aaKnown RBP22.29■■□□□ 1.16
NPHP4-209ENST00000489180 RTF1Q92541 710 aaKnown RBP22.29■■□□□ 1.16
NPHP4-209ENST00000489180 CCDC146Q8IYE0 955 aa22.27■■□□□ 1.16
NPHP4-209ENST00000489180 GGT6Q6P531 493 aa22.26■■□□□ 1.15
NPHP4-209ENST00000489180 ERCC6Q03468 1493 aa22.26■■□□□ 1.15
NPHP4-209ENST00000489180 CCDC88BA6NC98 1476 aa22.26■■□□□ 1.15
NPHP4-209ENST00000489180 FOXD4L1Q9NU39 408 aa22.23■■□□□ 1.15
NPHP4-209ENST00000489180 CLUAP1Q96AJ1 413 aa22.23■■□□□ 1.15
NPHP4-209ENST00000489180 NUP155O75694 1391 aa22.22■■□□□ 1.15
NPHP4-209ENST00000489180 KIAA1211Q6ZU35 1233 aa22.22■■□□□ 1.15
NPHP4-209ENST00000489180 HDGFL2Q7Z4V5 671 aaPredicted RBP22.22■■□□□ 1.15
NPHP4-209ENST00000489180 CFAP44Q96MT7 982 aa22.21■■□□□ 1.15
NPHP4-209ENST00000489180 L3MBTL2Q969R5 705 aa22.21■■□□□ 1.15
NPHP4-209ENST00000489180 GOLGA6L3A6NEY3 463 aa22.19■■□□□ 1.14
NPHP4-209ENST00000489180 GNL2Q13823 731 aaKnown RBP22.19■■□□□ 1.14
NPHP4-209ENST00000489180 PMFBP1Q8TBY8 1022 aa22.19■■□□□ 1.14
NPHP4-209ENST00000489180 SMC4Q9NTJ3 1288 aa22.19■■□□□ 1.14
NPHP4-209ENST00000489180 KIAA2012Q0VF49 1180 aa22.16■■□□□ 1.14
NPHP4-209ENST00000489180 NOL8Q76FK4 1167 aaKnown RBP22.15■■□□□ 1.14
NPHP4-209ENST00000489180 PTMSP20962 102 aa22.14■■□□□ 1.14
NPHP4-209ENST00000489180 PAK3O75914 559 aaPredicted RBP22.12■■□□□ 1.13
NPHP4-209ENST00000489180 SLC4A3P48751 1232 aa22.11■■□□□ 1.13
NPHP4-209ENST00000489180 FMN1Q68DA7 1419 aa22.11■■□□□ 1.13
NPHP4-209ENST00000489180 TRIM6-TRIM34B2RNG4 842 aa22.11■■□□□ 1.13
NPHP4-209ENST00000489180 ISY1Q9ULR0 285 aaKnown RBP22.11■■□□□ 1.13
NPHP4-209ENST00000489180 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
NPHP4-209ENST00000489180 CALD1Q05682 793 aaKnown RBP22.1■■□□□ 1.13
NPHP4-209ENST00000489180 HDGFP51858 240 aaKnown RBP22.1■■□□□ 1.13
NPHP4-209ENST00000489180 CENPJQ9HC77 1338 aaPredicted RBP22.1■■□□□ 1.13
NPHP4-209ENST00000489180 CLSTN1O94985 981 aa22.09■■□□□ 1.13
NPHP4-209ENST00000489180 ZNF330Q9Y3S2 320 aaPredicted RBP22.09■■□□□ 1.13
NPHP4-209ENST00000489180 NUTM2DQ5VT03 806 aaPredicted RBP22.09■■□□□ 1.13
NPHP4-209ENST00000489180 PLIN1O60240 522 aa22.08■■□□□ 1.13
NPHP4-209ENST00000489180 NLRP13Q86W25 1043 aa22.08■■□□□ 1.13
NPHP4-209ENST00000489180 ANKRD30AQ9BXX3 1397 aa22.08■■□□□ 1.12
NPHP4-209ENST00000489180 FOXD4L5Q5VV16 416 aaPredicted RBP22.07■■□□□ 1.12
NPHP4-209ENST00000489180 FOXD4L4Q8WXT5 416 aaPredicted RBP22.07■■□□□ 1.12
NPHP4-209ENST00000489180 RRP7AQ9Y3A4 280 aaKnown RBP22.07■■□□□ 1.12
NPHP4-209ENST00000489180 SLC4A10Q6U841 1118 aa22.06■■□□□ 1.12
NPHP4-209ENST00000489180 SYAP1Q96A49 352 aaPredicted RBP22.06■■□□□ 1.12
NPHP4-209ENST00000489180 HNRNPMP52272 730 aaKnown RBP eCLIP22.05■■□□□ 1.129e-7■■■■■ 28.6
NPHP4-209ENST00000489180 HSP90B1P14625 803 aaKnown RBP22.03■■□□□ 1.12
NPHP4-209ENST00000489180 STK31Q9BXU1 1019 aa22.03■■□□□ 1.12
NPHP4-209ENST00000489180 EIF3AQ14152 1382 aaKnown RBP22.03■■□□□ 1.12
NPHP4-209ENST00000489180 PDE3BQ13370 1112 aa22.02■■□□□ 1.12
NPHP4-209ENST00000489180 EXOC6Q8TAG9 804 aa22.02■■□□□ 1.12
NPHP4-209ENST00000489180 TDRD9Q8NDG6 1382 aaKnown RBP22.01■■□□□ 1.11
NPHP4-209ENST00000489180 FHOD3Q2V2M9 1422 aa22.01■■□□□ 1.11
NPHP4-209ENST00000489180 PDE4AP27815 886 aa22.01■■□□□ 1.11
NPHP4-209ENST00000489180 BCL2L13Q9BXK5 485 aa22■■□□□ 1.11
NPHP4-209ENST00000489180 DHX57Q6P158 1386 aaKnown RBP22■■□□□ 1.11
NPHP4-209ENST00000489180 CHMP3Q9Y3E7 222 aa22■■□□□ 1.11
NPHP4-209ENST00000489180 SPAG9O60271 1321 aaKnown RBP21.98■■□□□ 1.11
NPHP4-209ENST00000489180 MYBBP1AQ9BQG0 1328 aaKnown RBP21.98■■□□□ 1.11
NPHP4-209ENST00000489180 KIF15Q9NS87 1388 aa21.98■■□□□ 1.11
NPHP4-209ENST00000489180 HTATSF1O43719 755 aaKnown RBP21.98■■□□□ 1.11
NPHP4-209ENST00000489180 CSB-PGBD3P0DP91 1061 aa21.98■■□□□ 1.11
NPHP4-209ENST00000489180 KIF3BO15066 747 aa21.98■■□□□ 1.11
NPHP4-209ENST00000489180 ST20-MTHFSA0A0A6YYL1 179 aa21.97■■□□□ 1.11
NPHP4-209ENST00000489180 HMMRO75330 724 aa21.97■■□□□ 1.11
NPHP4-209ENST00000489180 PANK3Q9H999 370 aa21.97■■□□□ 1.11
NPHP4-209ENST00000489180 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms