RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 LOC105371045A0A1W2PR82 267 aa8.51□□□□□ -1.05
CCDC39-205ENST00000485055 FBXO3Q9UK99 471 aa8.51□□□□□ -1.05
CCDC39-205ENST00000485055 HECW1Q76N89 1606 aa8.5□□□□□ -1.05
CCDC39-205ENST00000485055 FOXD4L1Q9NU39 408 aa8.49□□□□□ -1.05
CCDC39-205ENST00000485055 RICTORQ6R327 1708 aa8.49□□□□□ -1.05
CCDC39-205ENST00000485055 FRMPD1Q5SYB0 1578 aa8.48□□□□□ -1.05
CCDC39-205ENST00000485055 FAM69CQ0P6D2 419 aa8.48□□□□□ -1.05
CCDC39-205ENST00000485055 LRRIQ1Q96JM4 1722 aa8.48□□□□□ -1.05
CCDC39-205ENST00000485055 REREQ9P2R6 1566 aa8.47□□□□□ -1.05
CCDC39-205ENST00000485055 FMN1Q68DA7 1419 aa8.46□□□□□ -1.05
CCDC39-205ENST00000485055 ADAMTSL3P82987 1691 aa8.45□□□□□ -1.06
CCDC39-205ENST00000485055 COL17A1Q9UMD9 1497 aaPredicted RBP8.45□□□□□ -1.06
CCDC39-205ENST00000485055 MAGI2Q86UL8 1455 aa8.45□□□□□ -1.06
CCDC39-205ENST00000485055 CD109Q6YHK3 1445 aa8.45□□□□□ -1.06
CCDC39-205ENST00000485055 ARHGAP35Q9NRY4 1499 aa8.45□□□□□ -1.06
CCDC39-205ENST00000485055 MYO5CQ9NQX4 1742 aa8.44□□□□□ -1.06
CCDC39-205ENST00000485055 FHOD3Q2V2M9 1422 aa8.44□□□□□ -1.06
CCDC39-205ENST00000485055 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.44□□□□□ -1.06
CCDC39-205ENST00000485055 CCDC18Q5T9S5 1454 aa8.43□□□□□ -1.06
CCDC39-205ENST00000485055 FAM9AQ8IZU1 332 aaPredicted RBP8.43□□□□□ -1.06
CCDC39-205ENST00000485055 ARHGEF40Q8TER5 1519 aa8.42□□□□□ -1.06
CCDC39-205ENST00000485055 CASKIN1Q8WXD9 1431 aa8.42□□□□□ -1.06
CCDC39-205ENST00000485055 SENP3Q9H4L4 574 aaPredicted RBP8.41□□□□□ -1.06
CCDC39-205ENST00000485055 KDM5CP41229 1560 aa8.41□□□□□ -1.06
CCDC39-205ENST00000485055 BCORL1Q5H9F3 1711 aa8.41□□□□□ -1.06
CCDC39-205ENST00000485055 FYCO1Q9BQS8 1478 aa8.41□□□□□ -1.06
CCDC39-205ENST00000485055 TTC37Q6PGP7 1564 aa8.4□□□□□ -1.06
CCDC39-205ENST00000485055 PREX2Q70Z35 1606 aa8.4□□□□□ -1.06
CCDC39-205ENST00000485055 KIF14Q15058 1648 aa8.39□□□□□ -1.07
CCDC39-205ENST00000485055 PLCH2O75038 1416 aa8.39□□□□□ -1.07
CCDC39-205ENST00000485055 CDC42BPBQ9Y5S2 1711 aa8.38□□□□□ -1.07
CCDC39-205ENST00000485055 PAXIP1Q6ZW49 1069 aaPredicted RBP8.38□□□□□ -1.07
CCDC39-205ENST00000485055 CFAP44Q96MT7 982 aa8.38□□□□□ -1.07
CCDC39-205ENST00000485055 ITSN2Q9NZM3 1697 aa8.38□□□□□ -1.07
CCDC39-205ENST00000485055 MAP3K1Q13233 1512 aa8.37□□□□□ -1.07
CCDC39-205ENST00000485055 ADGRL1O94910 1474 aa8.36□□□□□ -1.07
CCDC39-205ENST00000485055 TROQ12816 1431 aaPredicted RBP8.36□□□□□ -1.07
CCDC39-205ENST00000485055 CDC42BPAQ5VT25 1732 aa8.36□□□□□ -1.07
CCDC39-205ENST00000485055 AGLP35573 1532 aa8.36□□□□□ -1.07
CCDC39-205ENST00000485055 TSHZ2Q9NRE2 1034 aa8.36□□□□□ -1.07
CCDC39-205ENST00000485055 PCF11O94913 1555 aaKnown RBP8.35□□□□□ -1.07
CCDC39-205ENST00000485055 FAM135AQ9P2D6 1515 aa8.35□□□□□ -1.07
CCDC39-205ENST00000485055 AKNAQ7Z591 1439 aa8.34□□□□□ -1.07
CCDC39-205ENST00000485055 DENND4BO75064 1496 aaPredicted RBP8.34□□□□□ -1.07
CCDC39-205ENST00000485055 KDM4FA0A1W2PPD8 638 aa8.34□□□□□ -1.07
CCDC39-205ENST00000485055 POGZQ7Z3K3 1410 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 MROH2AA6NES4 1674 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 FANCAO15360 1455 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 MLH3Q9UHC1 1453 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 NBR1Q14596 966 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 ABCC1P33527 1531 aa8.33□□□□□ -1.08
CCDC39-205ENST00000485055 CDK13Q14004 1512 aaKnown RBP8.32□□□□□ -1.08
CCDC39-205ENST00000485055 ARHGEF12Q9NZN5 1544 aa8.32□□□□□ -1.08
CCDC39-205ENST00000485055 ZFYVE16Q7Z3T8 1539 aa8.32□□□□□ -1.08
CCDC39-205ENST00000485055 SIGLEC1Q9BZZ2 1709 aa8.32□□□□□ -1.08
CCDC39-205ENST00000485055 CLIP1P30622 1438 aa8.31□□□□□ -1.08
CCDC39-205ENST00000485055 HECW2Q9P2P5 1572 aa8.31□□□□□ -1.08
CCDC39-205ENST00000485055 KIAA1107Q9UPP5 1409 aa8.3□□□□□ -1.08
CCDC39-205ENST00000485055 PLEKHD1A6NEE1 506 aa8.3□□□□□ -1.08
CCDC39-205ENST00000485055 ZNF518AQ6AHZ1 1483 aa8.3□□□□□ -1.08
CCDC39-205ENST00000485055 PLEKHH2Q8IVE3 1493 aa8.3□□□□□ -1.08
CCDC39-205ENST00000485055 INO80Q9ULG1 1556 aaPredicted RBP8.29□□□□□ -1.08
CCDC39-205ENST00000485055 EHBP1L1Q8N3D4 1523 aa8.29□□□□□ -1.08
CCDC39-205ENST00000485055 PLXNC1O60486 1568 aa8.29□□□□□ -1.08
CCDC39-205ENST00000485055 DIP2CQ9Y2E4 1556 aa8.29□□□□□ -1.08
CCDC39-205ENST00000485055 KIDINS220Q9ULH0 1771 aa8.28□□□□□ -1.08
CCDC39-205ENST00000485055 ADGBQ8N7X0 1667 aa8.28□□□□□ -1.08
CCDC39-205ENST00000485055 ATP10AO60312 1499 aa8.28□□□□□ -1.08
CCDC39-205ENST00000485055 CDK11AQ9UQ88 783 aaPredicted RBP8.28□□□□□ -1.08
CCDC39-205ENST00000485055 FER1L4A9Z1Z3 1794 aa8.27□□□□□ -1.09
CCDC39-205ENST00000485055 C9orf84Q5VXU9 1444 aa8.27□□□□□ -1.09
CCDC39-205ENST00000485055 MAST1Q9Y2H9 1570 aa8.27□□□□□ -1.09
CCDC39-205ENST00000485055 CEP162Q5TB80 1403 aa8.27□□□□□ -1.09
CCDC39-205ENST00000485055 ARHGEF5Q12774 1597 aa8.26□□□□□ -1.09
CCDC39-205ENST00000485055 SAMD9LQ8IVG5 1584 aa8.26□□□□□ -1.09
CCDC39-205ENST00000485055 ABCA6Q8N139 1617 aa8.26□□□□□ -1.09
CCDC39-205ENST00000485055 MADDQ8WXG6 1647 aa8.26□□□□□ -1.09
CCDC39-205ENST00000485055 PREX1Q8TCU6 1659 aa8.25□□□□□ -1.09
CCDC39-205ENST00000485055 TIAM1Q13009 1591 aa8.25□□□□□ -1.09
CCDC39-205ENST00000485055 PTPRMP28827 1452 aa8.25□□□□□ -1.09
CCDC39-205ENST00000485055 RTEL1-TNFRSF6BF6WH68 1400 aa8.25□□□□□ -1.09
CCDC39-205ENST00000485055 PKD2Q13563 968 aa8.24□□□□□ -1.09
CCDC39-205ENST00000485055 GPATCH8Q9UKJ3 1502 aaKnown RBP8.24□□□□□ -1.09
CCDC39-205ENST00000485055 SUPT6HQ7KZ85 1726 aaKnown RBP8.24□□□□□ -1.09
CCDC39-205ENST00000485055 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-205ENST00000485055 ZNF142P52746 1687 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-205ENST00000485055 RIMS1Q86UR5 1692 aaKnown RBP8.23□□□□□ -1.09
CCDC39-205ENST00000485055 IGSF3O75054 1194 aa8.22□□□□□ -1.09
CCDC39-205ENST00000485055 EFCAB2Q5VUJ9 269 aa8.22□□□□□ -1.09
CCDC39-205ENST00000485055 SCAPERQ9BY12 1400 aa8.22□□□□□ -1.09
CCDC39-205ENST00000485055 ARHGAP5Q13017 1502 aa8.22□□□□□ -1.09
CCDC39-205ENST00000485055 EIF2AK4Q9P2K8 1649 aaKnown RBP8.22□□□□□ -1.09
CCDC39-205ENST00000485055 SETD1BQ9UPS6 1966 aaKnown RBP8.21□□□□□ -1.1
CCDC39-205ENST00000485055 CNTLNQ9NXG0 1405 aa8.2□□□□□ -1.1
CCDC39-205ENST00000485055 C3P01024 1663 aa8.2□□□□□ -1.1
CCDC39-205ENST00000485055 RNF17Q9BXT8 1623 aaKnown RBP8.2□□□□□ -1.1
CCDC39-205ENST00000485055 MBD5Q9P267 1494 aa8.2□□□□□ -1.1
CCDC39-205ENST00000485055 KCNH8Q96L42 1107 aa8.2□□□□□ -1.1
CCDC39-205ENST00000485055 ZC3H13Q5T200 1668 aaKnown RBP8.19□□□□□ -1.1
CCDC39-205ENST00000485055 P3H3Q8IVL6 736 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms