RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 ZMYM4Q5VZL5 1548 aa16.38■□□□□ 0.21
CPSF4-213ENST00000484112 HECW1Q76N89 1606 aa16.37■□□□□ 0.21
CPSF4-213ENST00000484112 PLCH2O75038 1416 aa16.37■□□□□ 0.21
CPSF4-213ENST00000484112 MAGI2Q86UL8 1455 aa16.37■□□□□ 0.21
CPSF4-213ENST00000484112 EFCAB2Q5VUJ9 269 aa16.37■□□□□ 0.21
CPSF4-213ENST00000484112 MYT1LQ9UL68 1186 aa16.37■□□□□ 0.21
CPSF4-213ENST00000484112 SIGLEC1Q9BZZ2 1709 aa16.36■□□□□ 0.21
CPSF4-213ENST00000484112 CDK11AQ9UQ88 783 aaPredicted RBP16.35■□□□□ 0.21
CPSF4-213ENST00000484112 CEBPAP49715 358 aaPredicted RBP16.34■□□□□ 0.21
CPSF4-213ENST00000484112 CERKQ8TCT0 537 aa16.33■□□□□ 0.2
CPSF4-213ENST00000484112 ATP10AO60312 1499 aa16.33■□□□□ 0.2
CPSF4-213ENST00000484112 FMN1Q68DA7 1419 aa16.31■□□□□ 0.2
CPSF4-213ENST00000484112 AFAP1Q8N556 730 aa16.31■□□□□ 0.2
CPSF4-213ENST00000484112 FER1L4A9Z1Z3 1794 aa16.31■□□□□ 0.2
CPSF4-213ENST00000484112 C9orf84Q5VXU9 1444 aa16.3■□□□□ 0.2
CPSF4-213ENST00000484112 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
CPSF4-213ENST00000484112 MYO5CQ9NQX4 1742 aa16.27■□□□□ 0.19
CPSF4-213ENST00000484112 ARHGAP5Q13017 1502 aa16.26■□□□□ 0.19
CPSF4-213ENST00000484112 ARHGEF12Q9NZN5 1544 aa16.26■□□□□ 0.19
CPSF4-213ENST00000484112 KIF14Q15058 1648 aa16.26■□□□□ 0.19
CPSF4-213ENST00000484112 CLIP1P30622 1438 aa16.25■□□□□ 0.19
CPSF4-213ENST00000484112 TROQ12816 1431 aaPredicted RBP16.25■□□□□ 0.19
CPSF4-213ENST00000484112 ZNF518AQ6AHZ1 1483 aa16.24■□□□□ 0.19
CPSF4-213ENST00000484112 ESF1Q9H501 851 aaKnown RBP16.22■□□□□ 0.19
CPSF4-213ENST00000484112 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
CPSF4-213ENST00000484112 PREX1Q8TCU6 1659 aa16.2■□□□□ 0.18
CPSF4-213ENST00000484112 UHRF1BP1Q6BDS2 1440 aa16.19■□□□□ 0.18
CPSF4-213ENST00000484112 KDM5CP41229 1560 aa16.17■□□□□ 0.18
CPSF4-213ENST00000484112 DIP2CQ9Y2E4 1556 aa16.17■□□□□ 0.18
CPSF4-213ENST00000484112 ZNF777Q9ULD5 760 aaPredicted RBP16.16■□□□□ 0.18
CPSF4-213ENST00000484112 TRAPPC8Q9Y2L5 1435 aa16.16■□□□□ 0.18
CPSF4-213ENST00000484112 LRRIQ1Q96JM4 1722 aa16.14■□□□□ 0.17
CPSF4-213ENST00000484112 MLH3Q9UHC1 1453 aa16.14■□□□□ 0.17
CPSF4-213ENST00000484112 CDC42BPBQ9Y5S2 1711 aa16.14■□□□□ 0.17
CPSF4-213ENST00000484112 ABCA6Q8N139 1617 aa16.13■□□□□ 0.17
CPSF4-213ENST00000484112 STRCQ7RTU9 1775 aa16.13■□□□□ 0.17
CPSF4-213ENST00000484112 DISP3Q9P2K9 1392 aa16.12■□□□□ 0.17
CPSF4-213ENST00000484112 SETD1BQ9UPS6 1966 aaKnown RBP16.11■□□□□ 0.17
CPSF4-213ENST00000484112 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
CPSF4-213ENST00000484112 ABCC1P33527 1531 aa16.1■□□□□ 0.17
CPSF4-213ENST00000484112 REREQ9P2R6 1566 aa16.1■□□□□ 0.17
CPSF4-213ENST00000484112 CCDC18Q5T9S5 1454 aa16.1■□□□□ 0.17
CPSF4-213ENST00000484112 PREX2Q70Z35 1606 aa16.09■□□□□ 0.17
CPSF4-213ENST00000484112 C3P01024 1663 aa16.09■□□□□ 0.17
CPSF4-213ENST00000484112 AGLP35573 1532 aa16.09■□□□□ 0.17
CPSF4-213ENST00000484112 HNRNPMP52272 730 aaKnown RBP eCLIP16.08■□□□□ 0.16
CPSF4-213ENST00000484112 PTPRTO14522 1441 aa16.08■□□□□ 0.16
CPSF4-213ENST00000484112 ITSN2Q9NZM3 1697 aa16.08■□□□□ 0.16
CPSF4-213ENST00000484112 CNTLNQ9NXG0 1405 aa16.06■□□□□ 0.16
CPSF4-213ENST00000484112 SPAG9O60271 1321 aaKnown RBP16.06■□□□□ 0.16
CPSF4-213ENST00000484112 ILDR2Q71H61 639 aa16.06■□□□□ 0.16
CPSF4-213ENST00000484112 KIDINS220Q9ULH0 1771 aa16.05■□□□□ 0.16
CPSF4-213ENST00000484112 ZMYM3Q14202 1370 aa16.03■□□□□ 0.16
CPSF4-213ENST00000484112 CDC42BPAQ5VT25 1732 aa16.03■□□□□ 0.16
CPSF4-213ENST00000484112 NCKAP5LQ9HCH0 1330 aa16.02■□□□□ 0.16
CPSF4-213ENST00000484112 SAMD9LQ8IVG5 1584 aa16.02■□□□□ 0.16
CPSF4-213ENST00000484112 CFDP1Q9UEE9 299 aaPredicted RBP16.02■□□□□ 0.16
CPSF4-213ENST00000484112 NCOA1Q15788 1441 aa16.02■□□□□ 0.15
CPSF4-213ENST00000484112 SYCP2Q9BX26 1530 aa16.01■□□□□ 0.15
CPSF4-213ENST00000484112 GPATCH8Q9UKJ3 1502 aaKnown RBP16.01■□□□□ 0.15
CPSF4-213ENST00000484112 GGT6Q6P531 493 aa16.01■□□□□ 0.15
CPSF4-213ENST00000484112 FYCO1Q9BQS8 1478 aa16■□□□□ 0.15
CPSF4-213ENST00000484112 CAMSAP1Q5T5Y3 1602 aa15.99■□□□□ 0.15
CPSF4-213ENST00000484112 LTBP4Q8N2S1 1624 aa15.99■□□□□ 0.15
CPSF4-213ENST00000484112 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
CPSF4-213ENST00000484112 CCNB3Q8WWL7 1395 aa15.99■□□□□ 0.15
CPSF4-213ENST00000484112 NPATQ14207 1427 aa15.98■□□□□ 0.15
CPSF4-213ENST00000484112 SOCS7O14512 581 aa15.97■□□□□ 0.15
CPSF4-213ENST00000484112 ZNF335Q9H4Z2 1342 aaPredicted RBP15.96■□□□□ 0.15
CPSF4-213ENST00000484112 CEP162Q5TB80 1403 aa15.96■□□□□ 0.15
CPSF4-213ENST00000484112 A2MP01023 1474 aa15.96■□□□□ 0.14
CPSF4-213ENST00000484112 ATP7AQ04656 1500 aa15.95■□□□□ 0.14
CPSF4-213ENST00000484112 MTUS2Q5JR59 1369 aa15.95■□□□□ 0.14
CPSF4-213ENST00000484112 KIAA1107Q9UPP5 1409 aa15.94■□□□□ 0.14
CPSF4-213ENST00000484112 UBAP1LF5GYI3 381 aa15.94■□□□□ 0.14
CPSF4-213ENST00000484112 PLEKHH2Q8IVE3 1493 aa15.94■□□□□ 0.14
CPSF4-213ENST00000484112 MROH2AA6NES4 1674 aa15.94■□□□□ 0.14
CPSF4-213ENST00000484112 CLTCQ00610 1675 aaKnown RBP15.94■□□□□ 0.14
CPSF4-213ENST00000484112 ZNF644Q9H582 1327 aaPredicted RBP15.94■□□□□ 0.14
CPSF4-213ENST00000484112 PKD2Q13563 968 aa15.93■□□□□ 0.14
CPSF4-213ENST00000484112 SPATA31D1Q6ZQQ2 1576 aa15.92■□□□□ 0.14
CPSF4-213ENST00000484112 IQSEC2Q5JU85 1478 aa15.92■□□□□ 0.14
CPSF4-213ENST00000484112 PTPRKQ15262 1439 aa15.91■□□□□ 0.14
CPSF4-213ENST00000484112 PLXNC1O60486 1568 aa15.89■□□□□ 0.13
CPSF4-213ENST00000484112 INO80Q9ULG1 1556 aaPredicted RBP15.89■□□□□ 0.13
CPSF4-213ENST00000484112 LOC105371045A0A1W2PR82 267 aa15.89■□□□□ 0.13
CPSF4-213ENST00000484112 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
CPSF4-213ENST00000484112 MYO3AQ8NEV4 1616 aa15.88■□□□□ 0.13
CPSF4-213ENST00000484112 CEP170BQ9Y4F5 1589 aaPredicted RBP15.87■□□□□ 0.13
CPSF4-213ENST00000484112 PLA2R1Q13018 1463 aa15.87■□□□□ 0.13
CPSF4-213ENST00000484112 KIF3BO15066 747 aa15.85■□□□□ 0.13
CPSF4-213ENST00000484112 FBXO31Q5XUX0 539 aaPredicted RBP15.85■□□□□ 0.13
CPSF4-213ENST00000484112 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
CPSF4-213ENST00000484112 TCOF1Q13428 1488 aaKnown RBP15.84■□□□□ 0.13
CPSF4-213ENST00000484112 ZNF142P52746 1687 aaPredicted RBP15.84■□□□□ 0.13
CPSF4-213ENST00000484112 DHX29Q7Z478 1369 aaKnown RBP15.84■□□□□ 0.13
CPSF4-213ENST00000484112 MBD5Q9P267 1494 aa15.84■□□□□ 0.13
CPSF4-213ENST00000484112 ADGBQ8N7X0 1667 aa15.83■□□□□ 0.13
CPSF4-213ENST00000484112 TIAM1Q13009 1591 aa15.83■□□□□ 0.12
CPSF4-213ENST00000484112 PIP4K2BP78356 416 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms