RNA–Protein interactions for RNA: ENST00000479458.1

HMGCL-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 3

Gene HMGCL, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-205ENST00000479458 KCNA4P22459 653 aa12.94□□□□□ -0.34
HMGCL-205ENST00000479458 LTBP4Q8N2S1 1624 aa12.92□□□□□ -0.34
HMGCL-205ENST00000479458 EFCAB5A4FU69 1503 aa12.92□□□□□ -0.34
HMGCL-205ENST00000479458 PRXQ9BXM0 1461 aa12.91□□□□□ -0.34
HMGCL-205ENST00000479458 SIGLEC1Q9BZZ2 1709 aa12.91□□□□□ -0.34
HMGCL-205ENST00000479458 ARHGEF12Q9NZN5 1544 aa12.9□□□□□ -0.34
HMGCL-205ENST00000479458 MAPK8IP2Q13387 824 aaPredicted RBP12.9□□□□□ -0.34
HMGCL-205ENST00000479458 FAM9AQ8IZU1 332 aaPredicted RBP12.89□□□□□ -0.35
HMGCL-205ENST00000479458 CFAP74Q9C0B2 1584 aa12.89□□□□□ -0.35
HMGCL-205ENST00000479458 EEA1Q15075 1411 aa12.88□□□□□ -0.35
HMGCL-205ENST00000479458 ZFYVE16Q7Z3T8 1539 aa12.88□□□□□ -0.35
HMGCL-205ENST00000479458 UHRF1BP1Q6BDS2 1440 aa12.87□□□□□ -0.35
HMGCL-205ENST00000479458 CSRNP3Q8WYN3 585 aa12.86□□□□□ -0.35
HMGCL-205ENST00000479458 NCBP3Q53F19 620 aaKnown RBP12.82□□□□□ -0.36
HMGCL-205ENST00000479458 HECW1Q76N89 1606 aa12.8□□□□□ -0.36
HMGCL-205ENST00000479458 ATP10AO60312 1499 aa12.8□□□□□ -0.36
HMGCL-205ENST00000479458 CNKSR2Q8WXI2 1034 aa12.8□□□□□ -0.36
HMGCL-205ENST00000479458 RAPGEF6Q8TEU7 1601 aa12.8□□□□□ -0.36
HMGCL-205ENST00000479458 C9orf84Q5VXU9 1444 aa12.79□□□□□ -0.36
HMGCL-205ENST00000479458 NCOA1Q15788 1441 aa12.78□□□□□ -0.36
HMGCL-205ENST00000479458 MLECQ14165 292 aa12.77□□□□□ -0.37
HMGCL-205ENST00000479458 CEBPAP49715 358 aaPredicted RBP12.76□□□□□ -0.37
HMGCL-205ENST00000479458 MED1Q15648 1581 aaPredicted RBP12.76□□□□□ -0.37
HMGCL-205ENST00000479458 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.75□□□□□ -0.37
HMGCL-205ENST00000479458 SAMD9Q5K651 1589 aa12.74□□□□□ -0.37
HMGCL-205ENST00000479458 NUP153P49790 1475 aaKnown RBP12.74□□□□□ -0.37
HMGCL-205ENST00000479458 TRAPPC8Q9Y2L5 1435 aa12.74□□□□□ -0.37
HMGCL-205ENST00000479458 ARID3CA6NKF2 412 aa12.74□□□□□ -0.37
HMGCL-205ENST00000479458 C3P01024 1663 aa12.73□□□□□ -0.37
HMGCL-205ENST00000479458 REREQ9P2R6 1566 aa12.73□□□□□ -0.37
HMGCL-205ENST00000479458 PLEKHD1A6NEE1 506 aa12.73□□□□□ -0.37
HMGCL-205ENST00000479458 UBAP1LF5GYI3 381 aa12.72□□□□□ -0.37
HMGCL-205ENST00000479458 SCAPERQ9BY12 1400 aa12.71□□□□□ -0.37
HMGCL-205ENST00000479458 PLCH2O75038 1416 aa12.7□□□□□ -0.38
HMGCL-205ENST00000479458 AGLP35573 1532 aa12.69□□□□□ -0.38
HMGCL-205ENST00000479458 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.69□□□□□ -0.38
HMGCL-205ENST00000479458 HNRNPUL2Q1KMD3 747 aaKnown RBP12.69□□□□□ -0.38
HMGCL-205ENST00000479458 NPM3O75607 178 aaKnown RBP12.68□□□□□ -0.38
HMGCL-205ENST00000479458 NPATQ14207 1427 aa12.67□□□□□ -0.38
HMGCL-205ENST00000479458 KDM5CP41229 1560 aa12.67□□□□□ -0.38
HMGCL-205ENST00000479458 CAMSAP1Q5T5Y3 1602 aa12.66□□□□□ -0.38
HMGCL-205ENST00000479458 PLA2R1Q13018 1463 aa12.66□□□□□ -0.38
HMGCL-205ENST00000479458 ZNF518AQ6AHZ1 1483 aa12.66□□□□□ -0.38
HMGCL-205ENST00000479458 CNTLNQ9NXG0 1405 aa12.66□□□□□ -0.38
HMGCL-205ENST00000479458 ZNF335Q9H4Z2 1342 aaPredicted RBP12.65□□□□□ -0.38
HMGCL-205ENST00000479458 PKD2Q13563 968 aa12.65□□□□□ -0.38
HMGCL-205ENST00000479458 HSPA1LP34931 641 aa12.64□□□□□ -0.39
HMGCL-205ENST00000479458 P3H3Q8IVL6 736 aa12.64□□□□□ -0.39
HMGCL-205ENST00000479458 DIP2CQ9Y2E4 1556 aa12.63□□□□□ -0.39
HMGCL-205ENST00000479458 MROH2AA6NES4 1674 aa12.63□□□□□ -0.39
HMGCL-205ENST00000479458 TCOF1Q13428 1488 aaKnown RBP12.62□□□□□ -0.39
HMGCL-205ENST00000479458 EFCAB2Q5VUJ9 269 aa12.62□□□□□ -0.39
HMGCL-205ENST00000479458 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
HMGCL-205ENST00000479458 ZNF142P52746 1687 aaPredicted RBP12.61□□□□□ -0.39
HMGCL-205ENST00000479458 MLH3Q9UHC1 1453 aa12.61□□□□□ -0.39
HMGCL-205ENST00000479458 TOM1O60784 492 aa12.61□□□□□ -0.39
HMGCL-205ENST00000479458 UBTFP17480 764 aaKnown RBP12.61□□□□□ -0.39
HMGCL-205ENST00000479458 MYO5CQ9NQX4 1742 aa12.6□□□□□ -0.39
HMGCL-205ENST00000479458 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
HMGCL-205ENST00000479458 CPS1P31327 1500 aa12.58□□□□□ -0.4
HMGCL-205ENST00000479458 RANGAP1P46060 587 aaPredicted RBP12.58□□□□□ -0.4
HMGCL-205ENST00000479458 NCKAP5LQ9HCH0 1330 aa12.57□□□□□ -0.4
HMGCL-205ENST00000479458 ABCA6Q8N139 1617 aa12.56□□□□□ -0.4
HMGCL-205ENST00000479458 AFAP1Q8N556 730 aa12.55□□□□□ -0.4
HMGCL-205ENST00000479458 PTPRKQ15262 1439 aa12.54□□□□□ -0.4
HMGCL-205ENST00000479458 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
HMGCL-205ENST00000479458 ARHGAP35Q9NRY4 1499 aa12.54□□□□□ -0.4
HMGCL-205ENST00000479458 RNF216Q9NWF9 866 aaPredicted RBP12.54□□□□□ -0.4
HMGCL-205ENST00000479458 ZMYM3Q14202 1370 aa12.54□□□□□ -0.4
HMGCL-205ENST00000479458 CEP170BQ9Y4F5 1589 aaPredicted RBP12.53□□□□□ -0.4
HMGCL-205ENST00000479458 MYO3AQ8NEV4 1616 aa12.52□□□□□ -0.4
HMGCL-205ENST00000479458 ALKQ9UM73 1620 aa12.51□□□□□ -0.41
HMGCL-205ENST00000479458 HOXD11P31277 338 aaPredicted RBP12.5□□□□□ -0.41
HMGCL-205ENST00000479458 PIP4K2BP78356 416 aa12.5□□□□□ -0.41
HMGCL-205ENST00000479458 SHANK2Q9UPX8 1470 aa12.5□□□□□ -0.41
HMGCL-205ENST00000479458 KIDINS220Q9ULH0 1771 aa12.49□□□□□ -0.41
HMGCL-205ENST00000479458 RGS17Q9UGC6 210 aaPredicted RBP12.49□□□□□ -0.41
HMGCL-205ENST00000479458 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
HMGCL-205ENST00000479458 CDK13Q14004 1512 aaKnown RBP12.48□□□□□ -0.41
HMGCL-205ENST00000479458 FMN1Q68DA7 1419 aa12.47□□□□□ -0.41
HMGCL-205ENST00000479458 CDK11AQ9UQ88 783 aaPredicted RBP12.47□□□□□ -0.41
HMGCL-205ENST00000479458 POLR1AO95602 1720 aaPredicted RBP12.47□□□□□ -0.41
HMGCL-205ENST00000479458 KIF14Q15058 1648 aa12.47□□□□□ -0.41
HMGCL-205ENST00000479458 A2ML1A8K2U0 1454 aa12.46□□□□□ -0.42
HMGCL-205ENST00000479458 CDC42BPBQ9Y5S2 1711 aa12.45□□□□□ -0.42
HMGCL-205ENST00000479458 MYT1LQ9UL68 1186 aa12.45□□□□□ -0.42
HMGCL-205ENST00000479458 ABCC1P33527 1531 aa12.45□□□□□ -0.42
HMGCL-205ENST00000479458 CLIP1P30622 1438 aa12.45□□□□□ -0.42
HMGCL-205ENST00000479458 DNMT1P26358 1616 aaKnown RBP12.44□□□□□ -0.42
HMGCL-205ENST00000479458 NEURL4Q96JN8 1562 aa12.44□□□□□ -0.42
HMGCL-205ENST00000479458 ITSN2Q9NZM3 1697 aa12.44□□□□□ -0.42
HMGCL-205ENST00000479458 TROQ12816 1431 aaPredicted RBP12.44□□□□□ -0.42
HMGCL-205ENST00000479458 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
HMGCL-205ENST00000479458 CLTCQ00610 1675 aaKnown RBP12.42□□□□□ -0.42
HMGCL-205ENST00000479458 PREX2Q70Z35 1606 aa12.4□□□□□ -0.42
HMGCL-205ENST00000479458 MED14O60244 1454 aa12.4□□□□□ -0.42
HMGCL-205ENST00000479458 PLXNC1O60486 1568 aa12.4□□□□□ -0.42
HMGCL-205ENST00000479458 DEPDC5O75140 1603 aa12.4□□□□□ -0.42
HMGCL-205ENST00000479458 RNF17Q9BXT8 1623 aaKnown RBP12.39□□□□□ -0.43
HMGCL-205ENST00000479458 CEP162Q5TB80 1403 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms