RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 FHOD3Q2V2M9 1422 aa10.15□□□□□ -0.79
LDB3-206ENST00000477489 RRBP1Q9P2E9 1410 aaKnown RBP10.15□□□□□ -0.79
LDB3-206ENST00000477489 LRRC9Q6ZRR7 1453 aa10.14□□□□□ -0.79
LDB3-206ENST00000477489 RANGAP1P46060 587 aaPredicted RBP10.13□□□□□ -0.79
LDB3-206ENST00000477489 PROM2Q8N271 834 aa10.13□□□□□ -0.79
LDB3-206ENST00000477489 HECW1Q76N89 1606 aa10.13□□□□□ -0.79
LDB3-206ENST00000477489 KIAA0556O60303 1618 aa10.12□□□□□ -0.79
LDB3-206ENST00000477489 CLASP1Q7Z460 1538 aa10.12□□□□□ -0.79
LDB3-206ENST00000477489 FARP1Q9Y4F1 1045 aaPredicted RBP10.11□□□□□ -0.79
LDB3-206ENST00000477489 CEP170Q5SW79 1584 aa10.1□□□□□ -0.79
LDB3-206ENST00000477489 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.1□□□□□ -0.79
LDB3-206ENST00000477489 PPARGC1BQ86YN6 1023 aaKnown RBP10.09□□□□□ -0.79
LDB3-206ENST00000477489 CHMP7Q8WUX9 453 aaPredicted RBP10.09□□□□□ -0.79
LDB3-206ENST00000477489 CREBZFQ9NS37 354 aa10.09□□□□□ -0.79
LDB3-206ENST00000477489 EHBP1L1Q8N3D4 1523 aa10.08□□□□□ -0.8
LDB3-206ENST00000477489 DISP1Q96F81 1524 aa10.08□□□□□ -0.8
LDB3-206ENST00000477489 CARMIL2Q6F5E8 1435 aa10.07□□□□□ -0.8
LDB3-206ENST00000477489 CCNB3Q8WWL7 1395 aa10.06□□□□□ -0.8
LDB3-206ENST00000477489 KANK4Q5T7N3 995 aaPredicted RBP10.06□□□□□ -0.8
LDB3-206ENST00000477489 SUPT6HQ7KZ85 1726 aaKnown RBP10.06□□□□□ -0.8
LDB3-206ENST00000477489 LRRIQ1Q96JM4 1722 aa10.05□□□□□ -0.8
LDB3-206ENST00000477489 KIF13AQ9H1H9 1805 aa10.05□□□□□ -0.8
LDB3-206ENST00000477489 RAPGEF6Q8TEU7 1601 aa10.04□□□□□ -0.8
LDB3-206ENST00000477489 SHROOM2Q13796 1616 aa10.03□□□□□ -0.8
LDB3-206ENST00000477489 EPRSP07814 1512 aaKnown RBP10.02□□□□□ -0.8
LDB3-206ENST00000477489 KDM4FA0A1W2PPD8 638 aa10.02□□□□□ -0.81
LDB3-206ENST00000477489 P3H3Q8IVL6 736 aa10.02□□□□□ -0.81
LDB3-206ENST00000477489 MTUS2Q5JR59 1369 aa10.01□□□□□ -0.81
LDB3-206ENST00000477489 CD44P16070 742 aaKnown RBP10.01□□□□□ -0.81
LDB3-206ENST00000477489 CLSPNQ9HAW4 1339 aa10.01□□□□□ -0.81
LDB3-206ENST00000477489 JPH4Q96JJ6 628 aa9.99□□□□□ -0.81
LDB3-206ENST00000477489 TTBK1Q5TCY1 1321 aaPredicted RBP9.99□□□□□ -0.81
LDB3-206ENST00000477489 PHLDB1Q86UU1 1377 aa9.99□□□□□ -0.81
LDB3-206ENST00000477489 NCOA2Q15596 1464 aa9.98□□□□□ -0.81
LDB3-206ENST00000477489 FKBP8Q14318 412 aa9.98□□□□□ -0.81
LDB3-206ENST00000477489 CDK11AQ9UQ88 783 aaPredicted RBP9.98□□□□□ -0.81
LDB3-206ENST00000477489 MYOM3Q5VTT5 1437 aa9.98□□□□□ -0.81
LDB3-206ENST00000477489 FGD6Q6ZV73 1430 aa9.98□□□□□ -0.81
LDB3-206ENST00000477489 MIA2Q96PC5 1412 aa9.98□□□□□ -0.81
LDB3-206ENST00000477489 ABCA8O94911 1581 aa9.97□□□□□ -0.81
LDB3-206ENST00000477489 NUP153P49790 1475 aaKnown RBP9.97□□□□□ -0.81
LDB3-206ENST00000477489 ADCY10Q96PN6 1610 aa9.96□□□□□ -0.81
LDB3-206ENST00000477489 CCER1Q8TC90 406 aaPredicted RBP9.96□□□□□ -0.82
LDB3-206ENST00000477489 ACIN1Q9UKV3 1341 aaKnown RBP9.96□□□□□ -0.82
LDB3-206ENST00000477489 GABBR2O75899 941 aa9.95□□□□□ -0.82
LDB3-206ENST00000477489 TCOF1Q13428 1488 aaKnown RBP9.95□□□□□ -0.82
LDB3-206ENST00000477489 MNX1P50219 401 aaPredicted RBP9.94□□□□□ -0.82
LDB3-206ENST00000477489 ATP1B4Q9UN42 357 aaPredicted RBP9.94□□□□□ -0.82
LDB3-206ENST00000477489 ITSN2Q9NZM3 1697 aa9.93□□□□□ -0.82
LDB3-206ENST00000477489 ERCC6L2Q5T890 1561 aa9.93□□□□□ -0.82
LDB3-206ENST00000477489 MAGI3Q5TCQ9 1506 aa9.93□□□□□ -0.82
LDB3-206ENST00000477489 PTPN23Q9H3S7 1636 aa9.93□□□□□ -0.82
LDB3-206ENST00000477489 CDK13Q14004 1512 aaKnown RBP9.92□□□□□ -0.82
LDB3-206ENST00000477489 TROQ12816 1431 aaPredicted RBP9.92□□□□□ -0.82
LDB3-206ENST00000477489 PRG4Q92954 1404 aaPredicted RBP9.92□□□□□ -0.82
LDB3-206ENST00000477489 AKNAQ7Z591 1439 aa9.91□□□□□ -0.82
LDB3-206ENST00000477489 NPM1P06748 294 aaKnown RBP eCLIP9.91□□□□□ -0.82
LDB3-206ENST00000477489 HECW2Q9P2P5 1572 aa9.91□□□□□ -0.82
LDB3-206ENST00000477489 KDM6BO15054 1643 aa9.9□□□□□ -0.82
LDB3-206ENST00000477489 PTPRGP23470 1445 aa9.9□□□□□ -0.83
LDB3-206ENST00000477489 SETD5Q9C0A6 1442 aa9.9□□□□□ -0.83
LDB3-206ENST00000477489 ZRANB1Q9UGI0 708 aa9.89□□□□□ -0.83
LDB3-206ENST00000477489 PLB1Q6P1J6 1458 aa9.89□□□□□ -0.83
LDB3-206ENST00000477489 UHRF1BP1LA0JNW5 1464 aa9.88□□□□□ -0.83
LDB3-206ENST00000477489 KIF14Q15058 1648 aa9.88□□□□□ -0.83
LDB3-206ENST00000477489 UACAQ9BZF9 1416 aa9.88□□□□□ -0.83
LDB3-206ENST00000477489 ZNF579Q8NAF0 562 aaKnown RBP9.87□□□□□ -0.83
LDB3-206ENST00000477489 HFM1A2PYH4 1435 aa9.87□□□□□ -0.83
LDB3-206ENST00000477489 ABCC2Q92887 1545 aa9.87□□□□□ -0.83
LDB3-206ENST00000477489 GCC2Q8IWJ2 1684 aa9.86□□□□□ -0.83
LDB3-206ENST00000477489 DHX57Q6P158 1386 aaKnown RBP9.86□□□□□ -0.83
LDB3-206ENST00000477489 ATP10BO94823 1461 aa9.85□□□□□ -0.83
LDB3-206ENST00000477489 CLCN6P51797 869 aa9.85□□□□□ -0.83
LDB3-206ENST00000477489 FAM50AQ14320 339 aaKnown RBP9.85□□□□□ -0.83
LDB3-206ENST00000477489 PAK3O75914 559 aaPredicted RBP9.84□□□□□ -0.83
LDB3-206ENST00000477489 MIER1Q8N108 512 aa9.84□□□□□ -0.83
LDB3-206ENST00000477489 FBXO41Q8TF61 875 aa9.84□□□□□ -0.83
LDB3-206ENST00000477489 DNMT1P26358 1616 aaKnown RBP9.84□□□□□ -0.83
LDB3-206ENST00000477489 ROCK1Q13464 1354 aa9.84□□□□□ -0.83
LDB3-206ENST00000477489 RAB3GAP2Q9H2M9 1393 aa9.84□□□□□ -0.83
LDB3-206ENST00000477489 PLEKHD1A6NEE1 506 aa9.83□□□□□ -0.84
LDB3-206ENST00000477489 ABCC10Q5T3U5 1492 aa9.83□□□□□ -0.84
LDB3-206ENST00000477489 DIP2BQ9P265 1576 aa9.83□□□□□ -0.84
LDB3-206ENST00000477489 TSPOAP1O95153 1857 aa9.83□□□□□ -0.84
LDB3-206ENST00000477489 PLEKHG5O94827 1062 aa9.82□□□□□ -0.84
LDB3-206ENST00000477489 FAM69CQ0P6D2 419 aa9.82□□□□□ -0.84
LDB3-206ENST00000477489 ADGRL1O94910 1474 aa9.82□□□□□ -0.84
LDB3-206ENST00000477489 GPATCH8Q9UKJ3 1502 aaKnown RBP9.82□□□□□ -0.84
LDB3-206ENST00000477489 CDC42BPAQ5VT25 1732 aa9.81□□□□□ -0.84
LDB3-206ENST00000477489 KDM5BQ9UGL1 1544 aa9.81□□□□□ -0.84
LDB3-206ENST00000477489 LMTK3Q96Q04 1460 aa9.8□□□□□ -0.84
LDB3-206ENST00000477489 TIMELESSQ9UNS1 1208 aa9.8□□□□□ -0.84
LDB3-206ENST00000477489 NAIPQ13075 1403 aa9.8□□□□□ -0.84
LDB3-206ENST00000477489 CROCC2H7BZ55 1655 aa9.8□□□□□ -0.84
LDB3-206ENST00000477489 ADGBQ8N7X0 1667 aa9.8□□□□□ -0.84
LDB3-206ENST00000477489 SHANK2Q9UPX8 1470 aa9.79□□□□□ -0.84
LDB3-206ENST00000477489 PREX2Q70Z35 1606 aa9.79□□□□□ -0.84
LDB3-206ENST00000477489 DAPK1P53355 1430 aa9.79□□□□□ -0.84
LDB3-206ENST00000477489 ARHGEF5Q12774 1597 aa9.79□□□□□ -0.84
LDB3-206ENST00000477489 CAMSAP2Q08AD1 1489 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms