RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 POLR1AO95602 1720 aaPredicted RBP11.75□□□□□ -0.53
VAPB-205ENST00000476395 MRC2Q9UBG0 1479 aa11.75□□□□□ -0.53
VAPB-205ENST00000476395 IQGAP2Q13576 1575 aa11.75□□□□□ -0.53
VAPB-205ENST00000476395 NBR1Q14596 966 aa11.74□□□□□ -0.53
VAPB-205ENST00000476395 WASHC2AQ641Q2 1341 aa11.74□□□□□ -0.53
VAPB-205ENST00000476395 ERCC6Q03468 1493 aa11.74□□□□□ -0.53
VAPB-205ENST00000476395 TONSLQ96HA7 1378 aa11.72□□□□□ -0.53
VAPB-205ENST00000476395 TEX14Q8IWB6 1497 aa11.72□□□□□ -0.53
VAPB-205ENST00000476395 C11orf95C9JLR9 678 aaPredicted RBP11.71□□□□□ -0.53
VAPB-205ENST00000476395 DNMT1P26358 1616 aaKnown RBP11.71□□□□□ -0.54
VAPB-205ENST00000476395 DISP1Q96F81 1524 aa11.7□□□□□ -0.54
VAPB-205ENST00000476395 CCDC184Q52MB2 194 aa11.7□□□□□ -0.54
VAPB-205ENST00000476395 SPATA31E1Q6ZUB1 1445 aa11.69□□□□□ -0.54
VAPB-205ENST00000476395 FANCIQ9NVI1 1328 aa11.69□□□□□ -0.54
VAPB-205ENST00000476395 KIAA0556O60303 1618 aa11.68□□□□□ -0.54
VAPB-205ENST00000476395 MIA2Q96PC5 1412 aa11.68□□□□□ -0.54
VAPB-205ENST00000476395 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.67□□□□□ -0.54
VAPB-205ENST00000476395 NCOA1Q15788 1441 aa11.67□□□□□ -0.54
VAPB-205ENST00000476395 RRP7BPQ9NSQ0 103 aa11.67□□□□□ -0.54
VAPB-205ENST00000476395 KLHL34Q8N239 644 aa11.67□□□□□ -0.54
VAPB-205ENST00000476395 NUP153P49790 1475 aaKnown RBP11.66□□□□□ -0.54
VAPB-205ENST00000476395 HSPA5P11021 654 aaKnown RBP11.66□□□□□ -0.54
VAPB-205ENST00000476395 ANP32CO43423 234 aa11.66□□□□□ -0.54
VAPB-205ENST00000476395 PAK3O75914 559 aaPredicted RBP11.66□□□□□ -0.54
VAPB-205ENST00000476395 BCORL1Q5H9F3 1711 aa11.66□□□□□ -0.54
VAPB-205ENST00000476395 ZNF608Q9ULD9 1512 aaPredicted RBP11.66□□□□□ -0.54
VAPB-205ENST00000476395 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
VAPB-205ENST00000476395 ANKRD30BQ9BXX2 1392 aa11.65□□□□□ -0.54
VAPB-205ENST00000476395 ABCC5O15440 1437 aa11.65□□□□□ -0.54
VAPB-205ENST00000476395 DAPK1P53355 1430 aa11.65□□□□□ -0.54
VAPB-205ENST00000476395 RPRD2Q5VT52 1461 aaKnown RBP11.65□□□□□ -0.54
VAPB-205ENST00000476395 CROCC2H7BZ55 1655 aa11.65□□□□□ -0.54
VAPB-205ENST00000476395 MBD5Q9P267 1494 aa11.65□□□□□ -0.54
VAPB-205ENST00000476395 ARXQ96QS3 562 aa11.64□□□□□ -0.55
VAPB-205ENST00000476395 CHIC2Q9UKJ5 165 aa11.64□□□□□ -0.55
VAPB-205ENST00000476395 CNTLNQ9NXG0 1405 aa11.64□□□□□ -0.55
VAPB-205ENST00000476395 FOXD1Q16676 465 aa11.64□□□□□ -0.55
VAPB-205ENST00000476395 NBPF8Q3BBV2 869 aa11.64□□□□□ -0.55
VAPB-205ENST00000476395 PZPP20742 1482 aa11.63□□□□□ -0.55
VAPB-205ENST00000476395 CDK11AQ9UQ88 783 aaPredicted RBP11.63□□□□□ -0.55
VAPB-205ENST00000476395 RAPGEF6Q8TEU7 1601 aa11.62□□□□□ -0.55
VAPB-205ENST00000476395 MPHOSPH9Q99550 1183 aa11.62□□□□□ -0.55
VAPB-205ENST00000476395 ROCK1Q13464 1354 aa11.62□□□□□ -0.55
VAPB-205ENST00000476395 IFT140Q96RY7 1462 aa11.62□□□□□ -0.55
VAPB-205ENST00000476395 L3MBTL2Q969R5 705 aa11.62□□□□□ -0.55
VAPB-205ENST00000476395 ADCY10Q96PN6 1610 aa11.61□□□□□ -0.55
VAPB-205ENST00000476395 KIF14Q15058 1648 aa11.61□□□□□ -0.55
VAPB-205ENST00000476395 ADGBQ8N7X0 1667 aa11.61□□□□□ -0.55
VAPB-205ENST00000476395 ZNF644Q9H582 1327 aaPredicted RBP11.61□□□□□ -0.55
VAPB-205ENST00000476395 CCDC7Q96M83 1385 aa11.6□□□□□ -0.55
VAPB-205ENST00000476395 EIF4G3O43432 1585 aaKnown RBP11.58□□□□□ -0.56
VAPB-205ENST00000476395 CDC42BPAQ5VT25 1732 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 B4GALNT3Q6L9W6 998 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 CEP170Q5SW79 1584 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 UBE2Q2Q8WVN8 375 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 KDM5CP41229 1560 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 KIAA0586Q9BVV6 1533 aa11.57□□□□□ -0.56
VAPB-205ENST00000476395 DHX29Q7Z478 1369 aaKnown RBP11.56□□□□□ -0.56
VAPB-205ENST00000476395 PRKRIP1Q9H875 184 aaPredicted RBP11.55□□□□□ -0.56
VAPB-205ENST00000476395 CAMSAP2Q08AD1 1489 aa11.55□□□□□ -0.56
VAPB-205ENST00000476395 HNRNPUQ00839 825 aaKnown RBP eCLIP11.55□□□□□ -0.56
VAPB-205ENST00000476395 ADGRL2O95490 1459 aa11.54□□□□□ -0.56
VAPB-205ENST00000476395 KIF7Q2M1P5 1343 aa11.54□□□□□ -0.56
VAPB-205ENST00000476395 ARID3CA6NKF2 412 aa11.54□□□□□ -0.56
VAPB-205ENST00000476395 GRIN2AQ12879 1464 aa11.54□□□□□ -0.56
VAPB-205ENST00000476395 PRG4Q92954 1404 aaPredicted RBP11.54□□□□□ -0.56
VAPB-205ENST00000476395 ITSN2Q9NZM3 1697 aa11.54□□□□□ -0.56
VAPB-205ENST00000476395 GPATCH8Q9UKJ3 1502 aaKnown RBP11.53□□□□□ -0.56
VAPB-205ENST00000476395 NOP58Q9Y2X3 529 aaKnown RBP11.53□□□□□ -0.56
VAPB-205ENST00000476395 E9PCH4 1651 aa11.52□□□□□ -0.56
VAPB-205ENST00000476395 EIF4G2P78344 907 aaKnown RBP eCLIP11.52□□□□□ -0.56
VAPB-205ENST00000476395 PLB1Q6P1J6 1458 aa11.51□□□□□ -0.57
VAPB-205ENST00000476395 TROQ12816 1431 aaPredicted RBP11.49□□□□□ -0.57
VAPB-205ENST00000476395 ABCA8O94911 1581 aa11.48□□□□□ -0.57
VAPB-205ENST00000476395 ABCC10Q5T3U5 1492 aa11.48□□□□□ -0.57
VAPB-205ENST00000476395 PKNOX2Q96KN3 472 aa11.47□□□□□ -0.57
VAPB-205ENST00000476395 KDM5DQ9BY66 1539 aa11.47□□□□□ -0.57
VAPB-205ENST00000476395 ZBED9Q6R2W3 1325 aa11.47□□□□□ -0.57
VAPB-205ENST00000476395 FBLN2P98095 1184 aa11.47□□□□□ -0.57
VAPB-205ENST00000476395 TULP1O00294 542 aaPredicted RBP11.46□□□□□ -0.57
VAPB-205ENST00000476395 UHRF1BP1Q6BDS2 1440 aa11.46□□□□□ -0.57
VAPB-205ENST00000476395 KIAA1107Q9UPP5 1409 aa11.46□□□□□ -0.58
VAPB-205ENST00000476395 SENP3-EIF4A1A0A087X0R7 540 aa11.46□□□□□ -0.58
VAPB-205ENST00000476395 MYT1LQ9UL68 1186 aa11.46□□□□□ -0.58
VAPB-205ENST00000476395 RNF123Q5XPI4 1314 aa11.44□□□□□ -0.58
VAPB-205ENST00000476395 MAGI1Q96QZ7 1491 aaPredicted RBP11.43□□□□□ -0.58
VAPB-205ENST00000476395 RALGAPBQ86X10 1494 aa11.43□□□□□ -0.58
VAPB-205ENST00000476395 PTPRGP23470 1445 aa11.43□□□□□ -0.58
VAPB-205ENST00000476395 NUP160Q12769 1436 aa11.43□□□□□ -0.58
VAPB-205ENST00000476395 CDC42BPBQ9Y5S2 1711 aa11.42□□□□□ -0.58
VAPB-205ENST00000476395 PPP4R2Q9NY27 417 aa11.42□□□□□ -0.58
VAPB-205ENST00000476395 SLC4A1APQ9BWU0 796 aaKnown RBP11.42□□□□□ -0.58
VAPB-205ENST00000476395 SHANK2Q9UPX8 1470 aa11.42□□□□□ -0.58
VAPB-205ENST00000476395 SMG6Q86US8 1419 aaKnown RBP11.41□□□□□ -0.58
VAPB-205ENST00000476395 USP47Q96K76 1375 aa11.41□□□□□ -0.58
VAPB-205ENST00000476395 FAM9BQ8IZU0 186 aa11.41□□□□□ -0.58
VAPB-205ENST00000476395 CHMP7Q8WUX9 453 aaPredicted RBP11.41□□□□□ -0.58
VAPB-205ENST00000476395 ARHGEF12Q9NZN5 1544 aa11.41□□□□□ -0.58
VAPB-205ENST00000476395 SYNJ2O15056 1496 aa11.4□□□□□ -0.58
VAPB-205ENST00000476395 TRPM1Q7Z4N2 1603 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms