RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	CERK	Q8TCT0	537 aa		13.04	□□□□□ -0.32
HDAC9-223	ENST00000476135	SSUH2	Q9Y2M2	353 aa		13.04	□□□□□ -0.32
HDAC9-223	ENST00000476135	CFAP43	Q8NDM7	1665 aa		13.03	□□□□□ -0.32
HDAC9-223	ENST00000476135	WDR7	Q9Y4E6	1490 aa		13.03	□□□□□ -0.32
HDAC9-223	ENST00000476135	CD109	Q6YHK3	1445 aa		13.02	□□□□□ -0.33
HDAC9-223	ENST00000476135	FXR2	P51116	673 aa	Known RBP eCLIP	13.01	□□□□□ -0.33
HDAC9-223	ENST00000476135	IQGAP2	Q13576	1575 aa		13	□□□□□ -0.33
HDAC9-223	ENST00000476135	DISP1	Q96F81	1524 aa		12.98	□□□□□ -0.33
HDAC9-223	ENST00000476135	ARAP3	Q8WWN8	1544 aa		12.98	□□□□□ -0.33
HDAC9-223	ENST00000476135	KIF27	Q86VH2	1401 aa		12.96	□□□□□ -0.33
HDAC9-223	ENST00000476135	BCORL1	Q5H9F3	1711 aa		12.96	□□□□□ -0.33
HDAC9-223	ENST00000476135	SPATA31D1	Q6ZQQ2	1576 aa		12.96	□□□□□ -0.33
HDAC9-223	ENST00000476135	MADD	Q8WXG6	1647 aa		12.95	□□□□□ -0.34
HDAC9-223	ENST00000476135	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.94	□□□□□ -0.34
HDAC9-223	ENST00000476135	CARMIL1	Q5VZK9	1371 aa		12.94	□□□□□ -0.34
HDAC9-223	ENST00000476135	CLEC11A	Q9Y240	323 aa		12.92	□□□□□ -0.34
HDAC9-223	ENST00000476135	UGGT2	Q9NYU1	1516 aa		12.92	□□□□□ -0.34
HDAC9-223	ENST00000476135	HSPA2	P54652	639 aa		12.91	□□□□□ -0.34
HDAC9-223	ENST00000476135	KCNH8	Q96L42	1107 aa		12.91	□□□□□ -0.34
HDAC9-223	ENST00000476135	PHLDB1	Q86UU1	1377 aa		12.91	□□□□□ -0.34
HDAC9-223	ENST00000476135	KIAA0556	O60303	1618 aa		12.89	□□□□□ -0.35
HDAC9-223	ENST00000476135	RIMS1	Q86UR5	1692 aa	Known RBP	12.88	□□□□□ -0.35
HDAC9-223	ENST00000476135	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.87	□□□□□ -0.35
HDAC9-223	ENST00000476135	ABCA8	O94911	1581 aa		12.83	□□□□□ -0.36
HDAC9-223	ENST00000476135	RAPGEF3	O95398	923 aa		12.83	□□□□□ -0.36
HDAC9-223	ENST00000476135	NEO1	Q92859	1461 aa		12.81	□□□□□ -0.36
HDAC9-223	ENST00000476135	HAX1	O00165	279 aa		12.81	□□□□□ -0.36
HDAC9-223	ENST00000476135	FRMPD1	Q5SYB0	1578 aa		12.81	□□□□□ -0.36
HDAC9-223	ENST00000476135	PRKAR2A	P13861	404 aa	Known RBP	12.8	□□□□□ -0.36
HDAC9-223	ENST00000476135	SP7	Q8TDD2	431 aa	Predicted RBP	12.8	□□□□□ -0.36
HDAC9-223	ENST00000476135	ABCA9	Q8IUA7	1624 aa		12.8	□□□□□ -0.36
HDAC9-223	ENST00000476135	ARHGEF40	Q8TER5	1519 aa		12.78	□□□□□ -0.36
HDAC9-223	ENST00000476135	SUPT5H	O00267	1087 aa	Known RBP	12.78	□□□□□ -0.36
HDAC9-223	ENST00000476135	POGZ	Q7Z3K3	1410 aa		12.77	□□□□□ -0.37
HDAC9-223	ENST00000476135	YEATS2	Q9ULM3	1422 aa		12.77	□□□□□ -0.37
HDAC9-223	ENST00000476135	FANCA	O15360	1455 aa		12.75	□□□□□ -0.37
HDAC9-223	ENST00000476135	GOLGA3	Q08378	1498 aa		12.75	□□□□□ -0.37
HDAC9-223	ENST00000476135	RAPGEF2	Q9Y4G8	1499 aa		12.75	□□□□□ -0.37
HDAC9-223	ENST00000476135	STRC	Q7RTU9	1775 aa		12.74	□□□□□ -0.37
HDAC9-223	ENST00000476135	PREX1	Q8TCU6	1659 aa		12.74	□□□□□ -0.37
HDAC9-223	ENST00000476135	TTC37	Q6PGP7	1564 aa		12.73	□□□□□ -0.37
HDAC9-223	ENST00000476135	IQSEC2	Q5JU85	1478 aa		12.72	□□□□□ -0.37
HDAC9-223	ENST00000476135	FER1L4	A9Z1Z3	1794 aa		12.72	□□□□□ -0.37
HDAC9-223	ENST00000476135	PRR29	P0C7W0	189 aa		12.72	□□□□□ -0.37
HDAC9-223	ENST00000476135	ATP10B	O94823	1461 aa		12.72	□□□□□ -0.37
HDAC9-223	ENST00000476135	AKNA	Q7Z591	1439 aa		12.71	□□□□□ -0.37
HDAC9-223	ENST00000476135	RICTOR	Q6R327	1708 aa		12.71	□□□□□ -0.37
HDAC9-223	ENST00000476135	DENND4B	O75064	1496 aa	Predicted RBP	12.7	□□□□□ -0.38
HDAC9-223	ENST00000476135	CTTNBP2	Q8WZ74	1663 aa		12.7	□□□□□ -0.38
HDAC9-223	ENST00000476135	PTPRT	O14522	1441 aa		12.7	□□□□□ -0.38
HDAC9-223	ENST00000476135	EVX2	Q03828	476 aa		12.69	□□□□□ -0.38
HDAC9-223	ENST00000476135	CHADL	Q6NUI6	762 aa		12.69	□□□□□ -0.38
HDAC9-223	ENST00000476135	FHOD3	Q2V2M9	1422 aa		12.69	□□□□□ -0.38
HDAC9-223	ENST00000476135	SIGLEC1	Q9BZZ2	1709 aa		12.68	□□□□□ -0.38
HDAC9-223	ENST00000476135	ZMYM4	Q5VZL5	1548 aa		12.67	□□□□□ -0.38
HDAC9-223	ENST00000476135	LTBP4	Q8N2S1	1624 aa		12.67	□□□□□ -0.38
HDAC9-223	ENST00000476135	EFCAB5	A4FU69	1503 aa		12.67	□□□□□ -0.38
HDAC9-223	ENST00000476135	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.66	□□□□□ -0.38
HDAC9-223	ENST00000476135	ZFYVE16	Q7Z3T8	1539 aa		12.66	□□□□□ -0.38
HDAC9-223	ENST00000476135	SPDYE4	A6NLX3	237 aa		12.65	□□□□□ -0.38
HDAC9-223	ENST00000476135	SETD1B	Q9UPS6	1966 aa	Known RBP	12.65	□□□□□ -0.38
HDAC9-223	ENST00000476135	MAGI2	Q86UL8	1455 aa		12.65	□□□□□ -0.38
HDAC9-223	ENST00000476135	ARHGEF12	Q9NZN5	1544 aa		12.64	□□□□□ -0.39
HDAC9-223	ENST00000476135	ARID3C	A6NKF2	412 aa		12.64	□□□□□ -0.39
HDAC9-223	ENST00000476135	MLEC	Q14165	292 aa		12.64	□□□□□ -0.39
HDAC9-223	ENST00000476135	CFAP74	Q9C0B2	1584 aa		12.64	□□□□□ -0.39
HDAC9-223	ENST00000476135	UHRF1BP1	Q6BDS2	1440 aa		12.63	□□□□□ -0.39
HDAC9-223	ENST00000476135	CEBPA	P49715	358 aa	Predicted RBP	12.6	□□□□□ -0.39
HDAC9-223	ENST00000476135	C19orf67	A6NJJ6	358 aa		12.59	□□□□□ -0.39
HDAC9-223	ENST00000476135	HECW1	Q76N89	1606 aa		12.58	□□□□□ -0.4
HDAC9-223	ENST00000476135	RAPGEF6	Q8TEU7	1601 aa		12.56	□□□□□ -0.4
HDAC9-223	ENST00000476135	UBAP1L	F5GYI3	381 aa		12.56	□□□□□ -0.4
HDAC9-223	ENST00000476135	ATP10A	O60312	1499 aa		12.56	□□□□□ -0.4
HDAC9-223	ENST00000476135	MED1	Q15648	1581 aa	Predicted RBP	12.56	□□□□□ -0.4
HDAC9-223	ENST00000476135	C9orf84	Q5VXU9	1444 aa		12.54	□□□□□ -0.4
HDAC9-223	ENST00000476135	NCOA1	Q15788	1441 aa		12.54	□□□□□ -0.4
HDAC9-223	ENST00000476135	STAG3	Q9UJ98	1225 aa		12.52	□□□□□ -0.41
HDAC9-223	ENST00000476135	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
HDAC9-223	ENST00000476135	P3H3	Q8IVL6	736 aa		12.51	□□□□□ -0.41
HDAC9-223	ENST00000476135	C3	P01024	1663 aa		12.51	□□□□□ -0.41
HDAC9-223	ENST00000476135	PLEKHD1	A6NEE1	506 aa		12.5	□□□□□ -0.41
HDAC9-223	ENST00000476135	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.5	□□□□□ -0.41
HDAC9-223	ENST00000476135	NUP153	P49790	1475 aa	Known RBP	12.49	□□□□□ -0.41
HDAC9-223	ENST00000476135	SCAPER	Q9BY12	1400 aa		12.49	□□□□□ -0.41
HDAC9-223	ENST00000476135	TRAPPC8	Q9Y2L5	1435 aa		12.49	□□□□□ -0.41
HDAC9-223	ENST00000476135	SAMD9	Q5K651	1589 aa		12.47	□□□□□ -0.41
HDAC9-223	ENST00000476135	PRX	Q9BXM0	1461 aa		12.46	□□□□□ -0.41
HDAC9-223	ENST00000476135	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.46	□□□□□ -0.41
HDAC9-223	ENST00000476135	HSPA1L	P34931	641 aa		12.46	□□□□□ -0.41
HDAC9-223	ENST00000476135	CAMSAP1	Q5T5Y3	1602 aa		12.45	□□□□□ -0.42
HDAC9-223	ENST00000476135	CREBZF	Q9NS37	354 aa		12.44	□□□□□ -0.42
HDAC9-223	ENST00000476135	PLCH2	O75038	1416 aa		12.44	□□□□□ -0.42
HDAC9-223	ENST00000476135	RERE	Q9P2R6	1566 aa		12.43	□□□□□ -0.42
HDAC9-223	ENST00000476135	ESF1	Q9H501	851 aa	Known RBP	12.41	□□□□□ -0.42
HDAC9-223	ENST00000476135	AGL	P35573	1532 aa		12.41	□□□□□ -0.42
HDAC9-223	ENST00000476135	ZNF518A	Q6AHZ1	1483 aa		12.4	□□□□□ -0.42
HDAC9-223	ENST00000476135	NCKAP5L	Q9HCH0	1330 aa		12.4	□□□□□ -0.42
HDAC9-223	ENST00000476135	CD44	P16070	742 aa	Known RBP	12.4	□□□□□ -0.42
HDAC9-223	ENST00000476135	PKD2	Q13563	968 aa		12.4	□□□□□ -0.42
HDAC9-223	ENST00000476135	KDM5C	P41229	1560 aa		12.39	□□□□□ -0.43

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