RNA–Protein interactions for RNA: ENST00000473421.1

TRAF4-209, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-209ENST00000473421 POGZQ7Z3K3 1410 aa21.18■□□□□ 0.98
TRAF4-209ENST00000473421 CEBPAP49715 358 aaPredicted RBP21.17■□□□□ 0.98
TRAF4-209ENST00000473421 MAGI2Q86UL8 1455 aa21.16■□□□□ 0.98
TRAF4-209ENST00000473421 ATP1B4Q9UN42 357 aaPredicted RBP21.16■□□□□ 0.98
TRAF4-209ENST00000473421 FER1L4A9Z1Z3 1794 aa21.15■□□□□ 0.98
TRAF4-209ENST00000473421 KIF14Q15058 1648 aa21.13■□□□□ 0.97
TRAF4-209ENST00000473421 CERKQ8TCT0 537 aa21.12■□□□□ 0.97
TRAF4-209ENST00000473421 ARHGEF12Q9NZN5 1544 aa21.12■□□□□ 0.97
TRAF4-209ENST00000473421 ATP10AO60312 1499 aa21.12■□□□□ 0.97
TRAF4-209ENST00000473421 ARHGAP35Q9NRY4 1499 aa21.11■□□□□ 0.97
TRAF4-209ENST00000473421 AFAP1Q8N556 730 aa21.1■□□□□ 0.97
TRAF4-209ENST00000473421 EFCAB2Q5VUJ9 269 aa21.09■□□□□ 0.97
TRAF4-209ENST00000473421 UBTFP17480 764 aaKnown RBP21.08■□□□□ 0.97
TRAF4-209ENST00000473421 MYO5CQ9NQX4 1742 aa21.07■□□□□ 0.96
TRAF4-209ENST00000473421 C9orf84Q5VXU9 1444 aa21.07■□□□□ 0.96
TRAF4-209ENST00000473421 LRRIQ1Q96JM4 1722 aa21.06■□□□□ 0.96
TRAF4-209ENST00000473421 FMN1Q68DA7 1419 aa21.03■□□□□ 0.96
TRAF4-209ENST00000473421 STRCQ7RTU9 1775 aa21.02■□□□□ 0.96
TRAF4-209ENST00000473421 TROQ12816 1431 aaPredicted RBP21.02■□□□□ 0.96
TRAF4-209ENST00000473421 PREX1Q8TCU6 1659 aa21.01■□□□□ 0.95
TRAF4-209ENST00000473421 KDM5CP41229 1560 aa21.01■□□□□ 0.95
TRAF4-209ENST00000473421 ARHGAP5Q13017 1502 aa21■□□□□ 0.95
TRAF4-209ENST00000473421 DIP2CQ9Y2E4 1556 aa20.99■□□□□ 0.95
TRAF4-209ENST00000473421 ZNF518AQ6AHZ1 1483 aa20.99■□□□□ 0.95
TRAF4-209ENST00000473421 CDC42BPBQ9Y5S2 1711 aa20.98■□□□□ 0.95
TRAF4-209ENST00000473421 TRAPPC8Q9Y2L5 1435 aa20.97■□□□□ 0.95
TRAF4-209ENST00000473421 CDK11AQ9UQ88 783 aaPredicted RBP20.97■□□□□ 0.95
TRAF4-209ENST00000473421 ABCA6Q8N139 1617 aa20.96■□□□□ 0.95
TRAF4-209ENST00000473421 MYT1LQ9UL68 1186 aa20.95■□□□□ 0.94
TRAF4-209ENST00000473421 CHIC1Q5VXU3 224 aa20.93■□□□□ 0.94
TRAF4-209ENST00000473421 C3P01024 1663 aa20.91■□□□□ 0.94
TRAF4-209ENST00000473421 UHRF1BP1Q6BDS2 1440 aa20.91■□□□□ 0.94
TRAF4-209ENST00000473421 ILDR2Q71H61 639 aa20.91■□□□□ 0.94
TRAF4-209ENST00000473421 MLH3Q9UHC1 1453 aa20.9■□□□□ 0.94
TRAF4-209ENST00000473421 CLIP1P30622 1438 aa20.9■□□□□ 0.94
TRAF4-209ENST00000473421 REREQ9P2R6 1566 aa20.89■□□□□ 0.94
TRAF4-209ENST00000473421 SETD1BQ9UPS6 1966 aaKnown RBP20.89■□□□□ 0.93
TRAF4-209ENST00000473421 ABCC1P33527 1531 aa20.88■□□□□ 0.93
TRAF4-209ENST00000473421 PREX2Q70Z35 1606 aa20.88■□□□□ 0.93
TRAF4-209ENST00000473421 KIDINS220Q9ULH0 1771 aa20.87■□□□□ 0.93
TRAF4-209ENST00000473421 ITSN2Q9NZM3 1697 aa20.86■□□□□ 0.93
TRAF4-209ENST00000473421 AGLP35573 1532 aa20.85■□□□□ 0.93
TRAF4-209ENST00000473421 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
TRAF4-209ENST00000473421 CDC42BPAQ5VT25 1732 aa20.84■□□□□ 0.93
TRAF4-209ENST00000473421 CASKIN1Q8WXD9 1431 aa20.83■□□□□ 0.93
TRAF4-209ENST00000473421 PTPRTO14522 1441 aa20.81■□□□□ 0.92
TRAF4-209ENST00000473421 LTBP4Q8N2S1 1624 aa20.81■□□□□ 0.92
TRAF4-209ENST00000473421 DISP3Q9P2K9 1392 aa20.81■□□□□ 0.92
TRAF4-209ENST00000473421 ZNF777Q9ULD5 760 aaPredicted RBP20.8■□□□□ 0.92
TRAF4-209ENST00000473421 SAMD9LQ8IVG5 1584 aa20.78■□□□□ 0.92
TRAF4-209ENST00000473421 HNRNPMP52272 730 aaKnown RBP eCLIP20.78■□□□□ 0.92
TRAF4-209ENST00000473421 NCOA1Q15788 1441 aa20.77■□□□□ 0.91
TRAF4-209ENST00000473421 CCDC18Q5T9S5 1454 aa20.76■□□□□ 0.91
TRAF4-209ENST00000473421 ESF1Q9H501 851 aaKnown RBP20.76■□□□□ 0.91
TRAF4-209ENST00000473421 SYCP2Q9BX26 1530 aa20.75■□□□□ 0.91
TRAF4-209ENST00000473421 GPATCH8Q9UKJ3 1502 aaKnown RBP20.74■□□□□ 0.91
TRAF4-209ENST00000473421 NCKAP5LQ9HCH0 1330 aa20.74■□□□□ 0.91
TRAF4-209ENST00000473421 ZMYM3Q14202 1370 aa20.73■□□□□ 0.91
TRAF4-209ENST00000473421 SUPT6HQ7KZ85 1726 aaKnown RBP20.73■□□□□ 0.91
TRAF4-209ENST00000473421 CAMSAP1Q5T5Y3 1602 aa20.71■□□□□ 0.91
TRAF4-209ENST00000473421 CNTLNQ9NXG0 1405 aa20.71■□□□□ 0.91
TRAF4-209ENST00000473421 SPAG9O60271 1321 aaKnown RBP20.71■□□□□ 0.91
TRAF4-209ENST00000473421 FYCO1Q9BQS8 1478 aa20.69■□□□□ 0.9
TRAF4-209ENST00000473421 ZNF335Q9H4Z2 1342 aaPredicted RBP20.68■□□□□ 0.9
TRAF4-209ENST00000473421 NPATQ14207 1427 aa20.68■□□□□ 0.9
TRAF4-209ENST00000473421 SOCS7O14512 581 aa20.67■□□□□ 0.9
TRAF4-209ENST00000473421 ZNF644Q9H582 1327 aaPredicted RBP20.67■□□□□ 0.9
TRAF4-209ENST00000473421 MROH2AA6NES4 1674 aa20.67■□□□□ 0.9
TRAF4-209ENST00000473421 CLTCQ00610 1675 aaKnown RBP20.67■□□□□ 0.9
TRAF4-209ENST00000473421 ATP7AQ04656 1500 aa20.66■□□□□ 0.9
TRAF4-209ENST00000473421 PLXNC1O60486 1568 aa20.65■□□□□ 0.9
TRAF4-209ENST00000473421 INO80Q9ULG1 1556 aaPredicted RBP20.64■□□□□ 0.9
TRAF4-209ENST00000473421 PTPRKQ15262 1439 aa20.64■□□□□ 0.89
TRAF4-209ENST00000473421 GGT6Q6P531 493 aa20.64■□□□□ 0.89
TRAF4-209ENST00000473421 CFDP1Q9UEE9 299 aaPredicted RBP20.64■□□□□ 0.89
TRAF4-209ENST00000473421 SPATA31D1Q6ZQQ2 1576 aa20.63■□□□□ 0.89
TRAF4-209ENST00000473421 A2MP01023 1474 aa20.63■□□□□ 0.89
TRAF4-209ENST00000473421 KIAA1107Q9UPP5 1409 aa20.62■□□□□ 0.89
TRAF4-209ENST00000473421 MYO3AQ8NEV4 1616 aa20.61■□□□□ 0.89
TRAF4-209ENST00000473421 IQSEC2Q5JU85 1478 aa20.6■□□□□ 0.89
TRAF4-209ENST00000473421 CCNB3Q8WWL7 1395 aa20.59■□□□□ 0.89
TRAF4-209ENST00000473421 ZNF142P52746 1687 aaPredicted RBP20.58■□□□□ 0.88
TRAF4-209ENST00000473421 TCOF1Q13428 1488 aaKnown RBP20.57■□□□□ 0.88
TRAF4-209ENST00000473421 CEP170BQ9Y4F5 1589 aaPredicted RBP20.57■□□□□ 0.88
TRAF4-209ENST00000473421 UBAP1LF5GYI3 381 aa20.56■□□□□ 0.88
TRAF4-209ENST00000473421 MBD5Q9P267 1494 aa20.56■□□□□ 0.88
TRAF4-209ENST00000473421 PLA2R1Q13018 1463 aa20.55■□□□□ 0.88
TRAF4-209ENST00000473421 FBXO31Q5XUX0 539 aaPredicted RBP20.54■□□□□ 0.88
TRAF4-209ENST00000473421 PLEKHH2Q8IVE3 1493 aa20.54■□□□□ 0.88
TRAF4-209ENST00000473421 TIAM1Q13009 1591 aa20.54■□□□□ 0.88
TRAF4-209ENST00000473421 MTUS2Q5JR59 1369 aa20.53■□□□□ 0.88
TRAF4-209ENST00000473421 PKD2Q13563 968 aa20.52■□□□□ 0.88
TRAF4-209ENST00000473421 ADGBQ8N7X0 1667 aa20.5■□□□□ 0.87
TRAF4-209ENST00000473421 DNMT1P26358 1616 aaKnown RBP20.49■□□□□ 0.87
TRAF4-209ENST00000473421 PPP6R1Q9UPN7 881 aa20.49■□□□□ 0.87
TRAF4-209ENST00000473421 A2ML1A8K2U0 1454 aa20.47■□□□□ 0.87
TRAF4-209ENST00000473421 DHX29Q7Z478 1369 aaKnown RBP20.46■□□□□ 0.87
TRAF4-209ENST00000473421 KIF3BO15066 747 aa20.45■□□□□ 0.86
TRAF4-209ENST00000473421 NEURL4Q96JN8 1562 aa20.45■□□□□ 0.86
TRAF4-209ENST00000473421 RTEL1-TNFRSF6BF6WH68 1400 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms