RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 IRX6P78412 446 aaPredicted RBP29.35■■■□□ 2.29
COL18A1-207ENST00000473212 NBPF8Q3BBV2 869 aa29.35■■■□□ 2.29
COL18A1-207ENST00000473212 DAPK1P53355 1430 aa29.33■■■□□ 2.29
COL18A1-207ENST00000473212 DISP1Q96F81 1524 aa29.32■■■□□ 2.28
COL18A1-207ENST00000473212 ABCC5O15440 1437 aa29.31■■■□□ 2.28
COL18A1-207ENST00000473212 NUP153P49790 1475 aaKnown RBP29.3■■■□□ 2.28
COL18A1-207ENST00000473212 ANKRD30BQ9BXX2 1392 aa29.27■■■□□ 2.28
COL18A1-207ENST00000473212 KIAA0556O60303 1618 aa29.26■■■□□ 2.27
COL18A1-207ENST00000473212 SLC4A1APQ9BWU0 796 aaKnown RBP29.25■■■□□ 2.27
COL18A1-207ENST00000473212 CNTLNQ9NXG0 1405 aa29.22■■■□□ 2.27
COL18A1-207ENST00000473212 PRG4Q92954 1404 aaPredicted RBP29.21■■■□□ 2.27
COL18A1-207ENST00000473212 KIAA0586Q9BVV6 1533 aa29.21■■■□□ 2.27
COL18A1-207ENST00000473212 DNMT1P26358 1616 aaKnown RBP29.2■■■□□ 2.27
COL18A1-207ENST00000473212 CCDC7Q96M83 1385 aa29.2■■■□□ 2.27
COL18A1-207ENST00000473212 RPRD2Q5VT52 1461 aaKnown RBP29.2■■■□□ 2.26
COL18A1-207ENST00000473212 TEX14Q8IWB6 1497 aa29.19■■■□□ 2.26
COL18A1-207ENST00000473212 NCOA1Q15788 1441 aa29.18■■■□□ 2.26
COL18A1-207ENST00000473212 ZNF777Q9ULD5 760 aaPredicted RBP29.18■■■□□ 2.26
COL18A1-207ENST00000473212 ROCK1Q13464 1354 aa29.18■■■□□ 2.26
COL18A1-207ENST00000473212 FAM9BQ8IZU0 186 aa29.17■■■□□ 2.26
COL18A1-207ENST00000473212 RAPGEF6Q8TEU7 1601 aa29.16■■■□□ 2.26
COL18A1-207ENST00000473212 IFT140Q96RY7 1462 aa29.16■■■□□ 2.26
COL18A1-207ENST00000473212 CNGB1Q14028 1251 aaPredicted RBP29.16■■■□□ 2.26
COL18A1-207ENST00000473212 PRKRIP1Q9H875 184 aaPredicted RBP29.16■■■□□ 2.26
COL18A1-207ENST00000473212 GRIN2AQ12879 1464 aa29.14■■■□□ 2.26
COL18A1-207ENST00000473212 PLB1Q6P1J6 1458 aa29.13■■■□□ 2.25
COL18A1-207ENST00000473212 KIF7Q2M1P5 1343 aa29.12■■■□□ 2.25
COL18A1-207ENST00000473212 FBLN2P98095 1184 aa29.11■■■□□ 2.25
COL18A1-207ENST00000473212 CFDP1Q9UEE9 299 aaPredicted RBP29.11■■■□□ 2.25
COL18A1-207ENST00000473212 EIF4G3O43432 1585 aaKnown RBP29.1■■■□□ 2.25
COL18A1-207ENST00000473212 PZPP20742 1482 aa29.09■■■□□ 2.25
COL18A1-207ENST00000473212 ZNF326Q5BKZ1 582 aaKnown RBP29.09■■■□□ 2.25
COL18A1-207ENST00000473212 MRS2Q9HD23 443 aa29.09■■■□□ 2.25
COL18A1-207ENST00000473212 ERCC6Q03468 1493 aa29.08■■■□□ 2.25
COL18A1-207ENST00000473212 CDK11AQ9UQ88 783 aaPredicted RBP29.08■■■□□ 2.24
COL18A1-207ENST00000473212 CAMSAP2Q08AD1 1489 aa29.07■■■□□ 2.24
COL18A1-207ENST00000473212 SPATA31E1Q6ZUB1 1445 aa29.07■■■□□ 2.24
COL18A1-207ENST00000473212 KIF14Q15058 1648 aa29.06■■■□□ 2.24
COL18A1-207ENST00000473212 TROQ12816 1431 aaPredicted RBP29.04■■■□□ 2.24
COL18A1-207ENST00000473212 POLR3GLQ9BT43 218 aa29.03■■■□□ 2.24
COL18A1-207ENST00000473212 CHMP7Q8WUX9 453 aaPredicted RBP29.02■■■□□ 2.24
COL18A1-207ENST00000473212 GPATCH8Q9UKJ3 1502 aaKnown RBP29.02■■■□□ 2.24
COL18A1-207ENST00000473212 MSH5O43196 834 aa29■■■□□ 2.23
COL18A1-207ENST00000473212 CEP170Q5SW79 1584 aa29■■■□□ 2.23
COL18A1-207ENST00000473212 SENP3-EIF4A1A0A087X0R7 540 aa28.99■■■□□ 2.23
COL18A1-207ENST00000473212 PKD2Q13563 968 aa28.98■■■□□ 2.23
COL18A1-207ENST00000473212 ERICH6BQ5W0A0 696 aa28.96■■■□□ 2.23
COL18A1-207ENST00000473212 PPP4R2Q9NY27 417 aa28.94■■■□□ 2.22
COL18A1-207ENST00000473212 ZBED9Q6R2W3 1325 aa28.92■■■□□ 2.22
COL18A1-207ENST00000473212 JPH4Q96JJ6 628 aa28.9■■■□□ 2.22
COL18A1-207ENST00000473212 BCORL1Q5H9F3 1711 aa28.9■■■□□ 2.22
COL18A1-207ENST00000473212 KIAA1107Q9UPP5 1409 aa28.9■■■□□ 2.22
COL18A1-207ENST00000473212 FANCIQ9NVI1 1328 aa28.9■■■□□ 2.22
COL18A1-207ENST00000473212 MBD5Q9P267 1494 aa28.88■■■□□ 2.21
COL18A1-207ENST00000473212 USP47Q96K76 1375 aa28.88■■■□□ 2.21
COL18A1-207ENST00000473212 ADGBQ8N7X0 1667 aa28.87■■■□□ 2.21
COL18A1-207ENST00000473212 ITSN2Q9NZM3 1697 aa28.87■■■□□ 2.21
COL18A1-207ENST00000473212 DHX29Q7Z478 1369 aaKnown RBP28.86■■■□□ 2.21
COL18A1-207ENST00000473212 POLR1AO95602 1720 aaPredicted RBP28.85■■■□□ 2.21
COL18A1-207ENST00000473212 SYNJ2O15056 1496 aa28.84■■■□□ 2.21
COL18A1-207ENST00000473212 ANKRD50Q9ULJ7 1429 aa28.84■■■□□ 2.21
COL18A1-207ENST00000473212 CROCC2H7BZ55 1655 aa28.84■■■□□ 2.21
COL18A1-207ENST00000473212 B4GALNT3Q6L9W6 998 aa28.83■■■□□ 2.21
COL18A1-207ENST00000473212 ADGRL2O95490 1459 aa28.83■■■□□ 2.21
COL18A1-207ENST00000473212 MAGI1Q96QZ7 1491 aaPredicted RBP28.83■■■□□ 2.21
COL18A1-207ENST00000473212 ANKRD30AQ9BXX3 1397 aa28.83■■■□□ 2.21
COL18A1-207ENST00000473212 NUP155O75694 1391 aa28.8■■■□□ 2.2
COL18A1-207ENST00000473212 ADCY10Q96PN6 1610 aa28.8■■■□□ 2.2
COL18A1-207ENST00000473212 KDM2AQ9Y2K7 1162 aa28.79■■■□□ 2.2
COL18A1-207ENST00000473212 PLEKHD1A6NEE1 506 aa28.77■■■□□ 2.2
COL18A1-207ENST00000473212 CDC42BPAQ5VT25 1732 aa28.77■■■□□ 2.2
COL18A1-207ENST00000473212 HNRNPMP52272 730 aaKnown RBP eCLIP28.76■■■□□ 2.19
COL18A1-207ENST00000473212 CARMIL2Q6F5E8 1435 aa28.76■■■□□ 2.19
COL18A1-207ENST00000473212 ATP10BO94823 1461 aa28.74■■■□□ 2.19
COL18A1-207ENST00000473212 C9orf84Q5VXU9 1444 aa28.74■■■□□ 2.19
COL18A1-207ENST00000473212 KDM5CP41229 1560 aa28.74■■■□□ 2.19
COL18A1-207ENST00000473212 NUP160Q12769 1436 aa28.73■■■□□ 2.19
COL18A1-207ENST00000473212 ABCC10Q5T3U5 1492 aa28.72■■■□□ 2.19
COL18A1-207ENST00000473212 ERICH6Q7L0X2 663 aa28.71■■■□□ 2.19
COL18A1-207ENST00000473212 CARD11Q9BXL7 1154 aa28.71■■■□□ 2.19
COL18A1-207ENST00000473212 BCL11AQ9H165 835 aa28.69■■■□□ 2.18
COL18A1-207ENST00000473212 ABCA8O94911 1581 aa28.67■■■□□ 2.18
COL18A1-207ENST00000473212 ST20-MTHFSA0A0A6YYL1 179 aa28.67■■■□□ 2.18
COL18A1-207ENST00000473212 DCAF11Q8TEB1 546 aa28.66■■■□□ 2.18
COL18A1-207ENST00000473212 TSPY4P0CV99 314 aa28.65■■■□□ 2.18
COL18A1-207ENST00000473212 TSPY10P0CW01 314 aa28.65■■■□□ 2.18
COL18A1-207ENST00000473212 SMG6Q86US8 1419 aaKnown RBP28.64■■■□□ 2.18
COL18A1-207ENST00000473212 KIF15Q9NS87 1388 aa28.64■■■□□ 2.17
COL18A1-207ENST00000473212 RALGAPBQ86X10 1494 aa28.62■■■□□ 2.17
COL18A1-207ENST00000473212 UHRF1BP1Q6BDS2 1440 aa28.6■■■□□ 2.17
COL18A1-207ENST00000473212 NUDCQ9Y266 331 aa28.59■■■□□ 2.17
COL18A1-207ENST00000473212 PNISRQ8TF01 805 aaKnown RBP28.58■■■□□ 2.17
COL18A1-207ENST00000473212 SHANK2Q9UPX8 1470 aa28.57■■■□□ 2.16
COL18A1-207ENST00000473212 TMC1Q8TDI8 760 aa28.56■■■□□ 2.16
COL18A1-207ENST00000473212 ARID4BQ4LE39 1312 aaPredicted RBP28.55■■■□□ 2.16
COL18A1-207ENST00000473212 RGL3Q3MIN7 710 aa28.53■■■□□ 2.16
COL18A1-207ENST00000473212 RNF123Q5XPI4 1314 aa28.5■■■□□ 2.15
COL18A1-207ENST00000473212 KDM5DQ9BY66 1539 aa28.5■■■□□ 2.15
COL18A1-207ENST00000473212 PTPRGP23470 1445 aa28.49■■■□□ 2.15
COL18A1-207ENST00000473212 ARHGEF12Q9NZN5 1544 aa28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms