RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 FER1L4A9Z1Z3 1794 aa15.76■□□□□ 0.11
VCL-204ENST00000472585 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
VCL-204ENST00000472585 EFCAB5A4FU69 1503 aa15.74■□□□□ 0.11
VCL-204ENST00000472585 YEATS2Q9ULM3 1422 aa15.74■□□□□ 0.11
VCL-204ENST00000472585 ZFYVE16Q7Z3T8 1539 aa15.73■□□□□ 0.11
VCL-204ENST00000472585 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.73■□□□□ 0.11
VCL-204ENST00000472585 DMRT2Q9Y5R5 561 aa15.73■□□□□ 0.11
VCL-204ENST00000472585 SIGLEC1Q9BZZ2 1709 aa15.71■□□□□ 0.11
VCL-204ENST00000472585 PREX1Q8TCU6 1659 aa15.71■□□□□ 0.11
VCL-204ENST00000472585 TTC37Q6PGP7 1564 aa15.7■□□□□ 0.1
VCL-204ENST00000472585 ZMYM4Q5VZL5 1548 aa15.7■□□□□ 0.1
VCL-204ENST00000472585 MAGI2Q86UL8 1455 aa15.7■□□□□ 0.1
VCL-204ENST00000472585 SPATA31D1Q6ZQQ2 1576 aa15.68■□□□□ 0.1
VCL-204ENST00000472585 PPP4R3CPQ6ZMV5 832 aa15.68■□□□□ 0.1
VCL-204ENST00000472585 CDK13Q14004 1512 aaKnown RBP15.68■□□□□ 0.1
VCL-204ENST00000472585 EEA1Q15075 1411 aa15.67■□□□□ 0.1
VCL-204ENST00000472585 HECW1Q76N89 1606 aa15.66■□□□□ 0.1
VCL-204ENST00000472585 SCAPERQ9BY12 1400 aa15.66■□□□□ 0.1
VCL-204ENST00000472585 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
VCL-204ENST00000472585 PLCH2O75038 1416 aa15.65■□□□□ 0.1
VCL-204ENST00000472585 SETD1BQ9UPS6 1966 aaKnown RBP15.65■□□□□ 0.1
VCL-204ENST00000472585 STRCQ7RTU9 1775 aa15.64■□□□□ 0.1
VCL-204ENST00000472585 CEBPAP49715 358 aaPredicted RBP15.63■□□□□ 0.09
VCL-204ENST00000472585 ARHGEF12Q9NZN5 1544 aa15.63■□□□□ 0.09
VCL-204ENST00000472585 UHRF1BP1Q6BDS2 1440 aa15.62■□□□□ 0.09
VCL-204ENST00000472585 ATP10AO60312 1499 aa15.62■□□□□ 0.09
VCL-204ENST00000472585 C9orf84Q5VXU9 1444 aa15.6■□□□□ 0.09
VCL-204ENST00000472585 ATP1B4Q9UN42 357 aaPredicted RBP15.6■□□□□ 0.09
VCL-204ENST00000472585 AFAP1Q8N556 730 aa15.59■□□□□ 0.09
VCL-204ENST00000472585 EFCAB2Q5VUJ9 269 aa15.58■□□□□ 0.08
VCL-204ENST00000472585 MYT1LQ9UL68 1186 aa15.58■□□□□ 0.08
VCL-204ENST00000472585 MAPK8IP2Q13387 824 aaPredicted RBP15.57■□□□□ 0.08
VCL-204ENST00000472585 ARHGAP35Q9NRY4 1499 aa15.57■□□□□ 0.08
VCL-204ENST00000472585 PTPRTO14522 1441 aa15.56■□□□□ 0.08
VCL-204ENST00000472585 UBTFP17480 764 aaKnown RBP15.55■□□□□ 0.08
VCL-204ENST00000472585 ESF1Q9H501 851 aaKnown RBP15.55■□□□□ 0.08
VCL-204ENST00000472585 MYO5CQ9NQX4 1742 aa15.54■□□□□ 0.08
VCL-204ENST00000472585 KIF14Q15058 1648 aa15.52■□□□□ 0.08
VCL-204ENST00000472585 IQSEC2Q5JU85 1478 aa15.52■□□□□ 0.07
VCL-204ENST00000472585 FMN1Q68DA7 1419 aa15.51■□□□□ 0.07
VCL-204ENST00000472585 ZNF518AQ6AHZ1 1483 aa15.5■□□□□ 0.07
VCL-204ENST00000472585 C3P01024 1663 aa15.5■□□□□ 0.07
VCL-204ENST00000472585 TROQ12816 1431 aaPredicted RBP15.5■□□□□ 0.07
VCL-204ENST00000472585 LTBP4Q8N2S1 1624 aa15.5■□□□□ 0.07
VCL-204ENST00000472585 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
VCL-204ENST00000472585 TRAPPC8Q9Y2L5 1435 aa15.47■□□□□ 0.07
VCL-204ENST00000472585 KDM5CP41229 1560 aa15.46■□□□□ 0.07
VCL-204ENST00000472585 POTEDQ86YR6 584 aa15.46■□□□□ 0.07
VCL-204ENST00000472585 ARHGAP5Q13017 1502 aa15.45■□□□□ 0.06
VCL-204ENST00000472585 UBAP1LF5GYI3 381 aa15.44■□□□□ 0.06
VCL-204ENST00000472585 DIP2CQ9Y2E4 1556 aa15.44■□□□□ 0.06
VCL-204ENST00000472585 NCOA1Q15788 1441 aa15.43■□□□□ 0.06
VCL-204ENST00000472585 LRRIQ1Q96JM4 1722 aa15.43■□□□□ 0.06
VCL-204ENST00000472585 MLH3Q9UHC1 1453 aa15.43■□□□□ 0.06
VCL-204ENST00000472585 REREQ9P2R6 1566 aa15.43■□□□□ 0.06
VCL-204ENST00000472585 CAMSAP1Q5T5Y3 1602 aa15.4■□□□□ 0.06
VCL-204ENST00000472585 ABCA6Q8N139 1617 aa15.4■□□□□ 0.06
VCL-204ENST00000472585 CNTLNQ9NXG0 1405 aa15.4■□□□□ 0.06
VCL-204ENST00000472585 CDC42BPBQ9Y5S2 1711 aa15.4■□□□□ 0.06
VCL-204ENST00000472585 AGLP35573 1532 aa15.39■□□□□ 0.05
VCL-204ENST00000472585 CLIP1P30622 1438 aa15.39■□□□□ 0.05
VCL-204ENST00000472585 CASKIN1Q8WXD9 1431 aa15.37■□□□□ 0.05
VCL-204ENST00000472585 ZNF335Q9H4Z2 1342 aaPredicted RBP15.37■□□□□ 0.05
VCL-204ENST00000472585 SUPT6HQ7KZ85 1726 aaKnown RBP15.37■□□□□ 0.05
VCL-204ENST00000472585 ABCC1P33527 1531 aa15.36■□□□□ 0.05
VCL-204ENST00000472585 NCKAP5LQ9HCH0 1330 aa15.36■□□□□ 0.05
VCL-204ENST00000472585 HNRNPMP52272 730 aaKnown RBP eCLIP15.35■□□□□ 0.05
VCL-204ENST00000472585 NPATQ14207 1427 aa15.34■□□□□ 0.05
VCL-204ENST00000472585 MROH2AA6NES4 1674 aa15.34■□□□□ 0.05
VCL-204ENST00000472585 KIDINS220Q9ULH0 1771 aa15.34■□□□□ 0.05
VCL-204ENST00000472585 PKD2Q13563 968 aa15.33■□□□□ 0.04
VCL-204ENST00000472585 ZNF777Q9ULD5 760 aaPredicted RBP15.33■□□□□ 0.04
VCL-204ENST00000472585 PREX2Q70Z35 1606 aa15.32■□□□□ 0.04
VCL-204ENST00000472585 ITSN2Q9NZM3 1697 aa15.32■□□□□ 0.04
VCL-204ENST00000472585 ZMYM3Q14202 1370 aa15.31■□□□□ 0.04
VCL-204ENST00000472585 GPATCH8Q9UKJ3 1502 aaKnown RBP15.31■□□□□ 0.04
VCL-204ENST00000472585 SAMD9LQ8IVG5 1584 aa15.3■□□□□ 0.04
VCL-204ENST00000472585 CCDC18Q5T9S5 1454 aa15.29■□□□□ 0.04
VCL-204ENST00000472585 PIP4K2BP78356 416 aa15.29■□□□□ 0.04
VCL-204ENST00000472585 CNKSR2Q8WXI2 1034 aa15.29■□□□□ 0.04
VCL-204ENST00000472585 MED1Q15648 1581 aaPredicted RBP15.28■□□□□ 0.04
VCL-204ENST00000472585 PLA2R1Q13018 1463 aa15.28■□□□□ 0.04
VCL-204ENST00000472585 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
VCL-204ENST00000472585 CDC42BPAQ5VT25 1732 aa15.28■□□□□ 0.04
VCL-204ENST00000472585 ZNF142P52746 1687 aaPredicted RBP15.28■□□□□ 0.04
VCL-204ENST00000472585 SPAG9O60271 1321 aaKnown RBP15.27■□□□□ 0.04
VCL-204ENST00000472585 TOM1O60784 492 aa15.27■□□□□ 0.04
VCL-204ENST00000472585 HSPA1LP34931 641 aa15.27■□□□□ 0.04
VCL-204ENST00000472585 CLTCQ00610 1675 aaKnown RBP15.27■□□□□ 0.03
VCL-204ENST00000472585 MYO3AQ8NEV4 1616 aa15.27■□□□□ 0.03
VCL-204ENST00000472585 ZNF644Q9H582 1327 aaPredicted RBP15.26■□□□□ 0.03
VCL-204ENST00000472585 CEP170BQ9Y4F5 1589 aaPredicted RBP15.25■□□□□ 0.03
VCL-204ENST00000472585 SYCP2Q9BX26 1530 aa15.25■□□□□ 0.03
VCL-204ENST00000472585 CFDP1Q9UEE9 299 aaPredicted RBP15.24■□□□□ 0.03
VCL-204ENST00000472585 TCOF1Q13428 1488 aaKnown RBP15.24■□□□□ 0.03
VCL-204ENST00000472585 FYCO1Q9BQS8 1478 aa15.23■□□□□ 0.03
VCL-204ENST00000472585 GGT6Q6P531 493 aa15.23■□□□□ 0.03
VCL-204ENST00000472585 PTPRKQ15262 1439 aa15.23■□□□□ 0.03
VCL-204ENST00000472585 KIAA1107Q9UPP5 1409 aa15.23■□□□□ 0.03
VCL-204ENST00000472585 A2MP01023 1474 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms