RNA–Protein interactions for RNA: ENST00000472224.1

CLRN1-205, Transcript of clarin 1, humanhuman

TSL 3

Gene CLRN1, Length 606 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-205ENST00000472224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.22■□□□□ 0.67
CLRN1-205ENST00000472224 HNRNPUL2Q1KMD3 747 aaKnown RBP19.22■□□□□ 0.67
CLRN1-205ENST00000472224 ZMYM4Q5VZL5 1548 aa19.21■□□□□ 0.67
CLRN1-205ENST00000472224 FMN1Q68DA7 1419 aa19.21■□□□□ 0.67
CLRN1-205ENST00000472224 FANCAO15360 1455 aa19.21■□□□□ 0.67
CLRN1-205ENST00000472224 CLIP1P30622 1438 aa19.2■□□□□ 0.66
CLRN1-205ENST00000472224 STRCQ7RTU9 1775 aa19.2■□□□□ 0.66
CLRN1-205ENST00000472224 HECW1Q76N89 1606 aa19.2■□□□□ 0.66
CLRN1-205ENST00000472224 DENND4BO75064 1496 aaPredicted RBP19.2■□□□□ 0.66
CLRN1-205ENST00000472224 PREX1Q8TCU6 1659 aa19.2■□□□□ 0.66
CLRN1-205ENST00000472224 ATP1B4Q9UN42 357 aaPredicted RBP19.18■□□□□ 0.66
CLRN1-205ENST00000472224 YEATS2Q9ULM3 1422 aa19.17■□□□□ 0.66
CLRN1-205ENST00000472224 ZFYVE16Q7Z3T8 1539 aa19.17■□□□□ 0.66
CLRN1-205ENST00000472224 POGZQ7Z3K3 1410 aa19.17■□□□□ 0.66
CLRN1-205ENST00000472224 AKNAQ7Z591 1439 aa19.17■□□□□ 0.66
CLRN1-205ENST00000472224 CDK13Q14004 1512 aaKnown RBP19.16■□□□□ 0.66
CLRN1-205ENST00000472224 CFAP74Q9C0B2 1584 aa19.16■□□□□ 0.66
CLRN1-205ENST00000472224 LRRIQ1Q96JM4 1722 aa19.12■□□□□ 0.65
CLRN1-205ENST00000472224 CEP162Q5TB80 1403 aa19.12■□□□□ 0.65
CLRN1-205ENST00000472224 LOC105371045A0A1W2PR82 267 aa19.12■□□□□ 0.65
CLRN1-205ENST00000472224 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLRN1-205ENST00000472224 ARHGEF12Q9NZN5 1544 aa19.11■□□□□ 0.65
CLRN1-205ENST00000472224 MLECQ14165 292 aa19.09■□□□□ 0.65
CLRN1-205ENST00000472224 MAGI2Q86UL8 1455 aa19.08■□□□□ 0.64
CLRN1-205ENST00000472224 CASKIN1Q8WXD9 1431 aa19.06■□□□□ 0.64
CLRN1-205ENST00000472224 PLEKHD1A6NEE1 506 aa19.05■□□□□ 0.64
CLRN1-205ENST00000472224 FYCO1Q9BQS8 1478 aa19.04■□□□□ 0.64
CLRN1-205ENST00000472224 CEBPAP49715 358 aaPredicted RBP19.02■□□□□ 0.64
CLRN1-205ENST00000472224 CCDC18Q5T9S5 1454 aa19.02■□□□□ 0.63
CLRN1-205ENST00000472224 LTBP4Q8N2S1 1624 aa19.01■□□□□ 0.63
CLRN1-205ENST00000472224 ATP10AO60312 1499 aa18.99■□□□□ 0.63
CLRN1-205ENST00000472224 C9orf84Q5VXU9 1444 aa18.99■□□□□ 0.63
CLRN1-205ENST00000472224 DMRT2Q9Y5R5 561 aa18.98■□□□□ 0.63
CLRN1-205ENST00000472224 KIF14Q15058 1648 aa18.98■□□□□ 0.63
CLRN1-205ENST00000472224 CDK11AQ9UQ88 783 aaPredicted RBP18.97■□□□□ 0.63
CLRN1-205ENST00000472224 PTPRTO14522 1441 aa18.97■□□□□ 0.63
CLRN1-205ENST00000472224 UHRF1BP1Q6BDS2 1440 aa18.97■□□□□ 0.63
CLRN1-205ENST00000472224 SCAPERQ9BY12 1400 aa18.97■□□□□ 0.63
CLRN1-205ENST00000472224 C3P01024 1663 aa18.95■□□□□ 0.62
CLRN1-205ENST00000472224 TROQ12816 1431 aaPredicted RBP18.95■□□□□ 0.62
CLRN1-205ENST00000472224 SETD1BQ9UPS6 1966 aaKnown RBP18.94■□□□□ 0.62
CLRN1-205ENST00000472224 MYO5CQ9NQX4 1742 aa18.94■□□□□ 0.62
CLRN1-205ENST00000472224 IQSEC2Q5JU85 1478 aa18.93■□□□□ 0.62
CLRN1-205ENST00000472224 PLCH2O75038 1416 aa18.91■□□□□ 0.62
CLRN1-205ENST00000472224 DIP2CQ9Y2E4 1556 aa18.89■□□□□ 0.61
CLRN1-205ENST00000472224 KDM5CP41229 1560 aa18.88■□□□□ 0.61
CLRN1-205ENST00000472224 VPS8Q8N3P4 1428 aa18.87■□□□□ 0.61
CLRN1-205ENST00000472224 REREQ9P2R6 1566 aa18.85■□□□□ 0.61
CLRN1-205ENST00000472224 NCOA1Q15788 1441 aa18.85■□□□□ 0.61
CLRN1-205ENST00000472224 ABCA6Q8N139 1617 aa18.85■□□□□ 0.61
CLRN1-205ENST00000472224 ZNF518AQ6AHZ1 1483 aa18.84■□□□□ 0.61
CLRN1-205ENST00000472224 MTUS2Q5JR59 1369 aa18.83■□□□□ 0.61
CLRN1-205ENST00000472224 ARHGAP5Q13017 1502 aa18.83■□□□□ 0.6
CLRN1-205ENST00000472224 PREX2Q70Z35 1606 aa18.82■□□□□ 0.6
CLRN1-205ENST00000472224 EHBP1L1Q8N3D4 1523 aa18.81■□□□□ 0.6
CLRN1-205ENST00000472224 CDC42BPAQ5VT25 1732 aa18.81■□□□□ 0.6
CLRN1-205ENST00000472224 CDC42BPBQ9Y5S2 1711 aa18.81■□□□□ 0.6
CLRN1-205ENST00000472224 TIAM1Q13009 1591 aa18.8■□□□□ 0.6
CLRN1-205ENST00000472224 CAMSAP1Q5T5Y3 1602 aa18.79■□□□□ 0.6
CLRN1-205ENST00000472224 TRAPPC8Q9Y2L5 1435 aa18.78■□□□□ 0.6
CLRN1-205ENST00000472224 AFAP1Q8N556 730 aa18.78■□□□□ 0.6
CLRN1-205ENST00000472224 EFCAB2Q5VUJ9 269 aa18.77■□□□□ 0.6
CLRN1-205ENST00000472224 AGLP35573 1532 aa18.77■□□□□ 0.6
CLRN1-205ENST00000472224 SUPT6HQ7KZ85 1726 aaKnown RBP18.74■□□□□ 0.59
CLRN1-205ENST00000472224 MED1Q15648 1581 aaPredicted RBP18.74■□□□□ 0.59
CLRN1-205ENST00000472224 ZNF335Q9H4Z2 1342 aaPredicted RBP18.74■□□□□ 0.59
CLRN1-205ENST00000472224 MLH3Q9UHC1 1453 aa18.73■□□□□ 0.59
CLRN1-205ENST00000472224 UBAP1LF5GYI3 381 aa18.72■□□□□ 0.59
CLRN1-205ENST00000472224 MROH2AA6NES4 1674 aa18.72■□□□□ 0.59
CLRN1-205ENST00000472224 ITSN2Q9NZM3 1697 aa18.72■□□□□ 0.59
CLRN1-205ENST00000472224 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
CLRN1-205ENST00000472224 KIDINS220Q9ULH0 1771 aa18.7■□□□□ 0.58
CLRN1-205ENST00000472224 ZNF142P52746 1687 aaPredicted RBP18.7■□□□□ 0.58
CLRN1-205ENST00000472224 ABCC1P33527 1531 aa18.69■□□□□ 0.58
CLRN1-205ENST00000472224 GPATCH8Q9UKJ3 1502 aaKnown RBP18.69■□□□□ 0.58
CLRN1-205ENST00000472224 MYO3AQ8NEV4 1616 aa18.68■□□□□ 0.58
CLRN1-205ENST00000472224 ZNF777Q9ULD5 760 aaPredicted RBP18.68■□□□□ 0.58
CLRN1-205ENST00000472224 LRRC9Q6ZRR7 1453 aa18.68■□□□□ 0.58
CLRN1-205ENST00000472224 NCKAP5LQ9HCH0 1330 aa18.68■□□□□ 0.58
CLRN1-205ENST00000472224 SAMD9LQ8IVG5 1584 aa18.68■□□□□ 0.58
CLRN1-205ENST00000472224 NPATQ14207 1427 aa18.67■□□□□ 0.58
CLRN1-205ENST00000472224 CNTLNQ9NXG0 1405 aa18.67■□□□□ 0.58
CLRN1-205ENST00000472224 APLP2Q06481 763 aa18.67■□□□□ 0.58
CLRN1-205ENST00000472224 NCOA2Q15596 1464 aa18.66■□□□□ 0.58
CLRN1-205ENST00000472224 MAP3K1Q13233 1512 aa18.66■□□□□ 0.58
CLRN1-205ENST00000472224 MYT1LQ9UL68 1186 aa18.66■□□□□ 0.58
CLRN1-205ENST00000472224 ESF1Q9H501 851 aaKnown RBP18.65■□□□□ 0.58
CLRN1-205ENST00000472224 SYCP2Q9BX26 1530 aa18.64■□□□□ 0.58
CLRN1-205ENST00000472224 CFDP1Q9UEE9 299 aaPredicted RBP18.64■□□□□ 0.57
CLRN1-205ENST00000472224 TCOF1Q13428 1488 aaKnown RBP18.64■□□□□ 0.57
CLRN1-205ENST00000472224 PPP4R3CPQ6ZMV5 832 aa18.63■□□□□ 0.57
CLRN1-205ENST00000472224 PLA2R1Q13018 1463 aa18.63■□□□□ 0.57
CLRN1-205ENST00000472224 CLTCQ00610 1675 aaKnown RBP18.63■□□□□ 0.57
CLRN1-205ENST00000472224 CEP170BQ9Y4F5 1589 aaPredicted RBP18.62■□□□□ 0.57
CLRN1-205ENST00000472224 HSPA1LP34931 641 aa18.61■□□□□ 0.57
CLRN1-205ENST00000472224 KANK4Q5T7N3 995 aaPredicted RBP18.61■□□□□ 0.57
CLRN1-205ENST00000472224 ZMYM3Q14202 1370 aa18.59■□□□□ 0.57
CLRN1-205ENST00000472224 PLEKHH2Q8IVE3 1493 aa18.58■□□□□ 0.56
CLRN1-205ENST00000472224 PKD2Q13563 968 aa18.56■□□□□ 0.56
CLRN1-205ENST00000472224 CAMSAP2Q08AD1 1489 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms