RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ATP6V1DQ9Y5K8 247 aa16.69■□□□□ 0.26
COL6A3-209ENST00000472056 GNL2Q13823 731 aaKnown RBP16.69■□□□□ 0.26
COL6A3-209ENST00000472056 TMF1P82094 1093 aa16.68■□□□□ 0.26
COL6A3-209ENST00000472056 CHIC2Q9UKJ5 165 aa16.68■□□□□ 0.26
COL6A3-209ENST00000472056 PDE3BQ13370 1112 aa16.68■□□□□ 0.26
COL6A3-209ENST00000472056 CCDC70Q6NSX1 233 aa16.67■□□□□ 0.26
COL6A3-209ENST00000472056 GPATCH3Q96I76 525 aa16.66■□□□□ 0.26
COL6A3-209ENST00000472056 TEX35Q5T0J7 233 aa16.66■□□□□ 0.26
COL6A3-209ENST00000472056 PABPN1Q86U42 306 aaKnown RBP eCLIP16.66■□□□□ 0.26
COL6A3-209ENST00000472056 B4GALNT3Q6L9W6 998 aa16.65■□□□□ 0.26
COL6A3-209ENST00000472056 EIF3AQ14152 1382 aaKnown RBP16.65■□□□□ 0.26
COL6A3-209ENST00000472056 NOM1Q5C9Z4 860 aaKnown RBP16.65■□□□□ 0.26
COL6A3-209ENST00000472056 ARHGAP35Q9NRY4 1499 aa16.65■□□□□ 0.26
COL6A3-209ENST00000472056 TULP1O00294 542 aaPredicted RBP16.65■□□□□ 0.26
COL6A3-209ENST00000472056 KANK1Q14678 1352 aa16.64■□□□□ 0.25
COL6A3-209ENST00000472056 GOLGA2Q08379 1002 aa16.64■□□□□ 0.25
COL6A3-209ENST00000472056 WRNQ14191 1432 aaPredicted RBP eCLIP16.63■□□□□ 0.25
COL6A3-209ENST00000472056 PPP1R15AO75807 674 aaPredicted RBP16.63■□□□□ 0.25
COL6A3-209ENST00000472056 FRAT1Q92837 279 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-209ENST00000472056 ST18O60284 1047 aa16.62■□□□□ 0.25
COL6A3-209ENST00000472056 KIF16BQ96L93 1317 aa16.62■□□□□ 0.25
COL6A3-209ENST00000472056 SETD5Q9C0A6 1442 aa16.61■□□□□ 0.25
COL6A3-209ENST00000472056 PLEKHD1A6NEE1 506 aa16.6■□□□□ 0.25
COL6A3-209ENST00000472056 TPM3P06753 285 aa16.6■□□□□ 0.25
COL6A3-209ENST00000472056 RCAN3Q9UKA8 241 aa16.6■□□□□ 0.25
COL6A3-209ENST00000472056 ARID3CA6NKF2 412 aa16.59■□□□□ 0.25
COL6A3-209ENST00000472056 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.59■□□□□ 0.25
COL6A3-209ENST00000472056 FANCIQ9NVI1 1328 aa16.58■□□□□ 0.25
COL6A3-209ENST00000472056 MYO15BQ96JP2 1530 aa16.58■□□□□ 0.25
COL6A3-209ENST00000472056 HMMRO75330 724 aa16.58■□□□□ 0.24
COL6A3-209ENST00000472056 TPRNQ4KMQ1 711 aa16.57■□□□□ 0.24
COL6A3-209ENST00000472056 GSE1Q14687 1217 aa16.56■□□□□ 0.24
COL6A3-209ENST00000472056 RRP7BPQ9NSQ0 103 aa16.55■□□□□ 0.24
COL6A3-209ENST00000472056 NGEFQ8N5V2 710 aa16.55■□□□□ 0.24
COL6A3-209ENST00000472056 TSR1Q2NL82 804 aaKnown RBP16.54■□□□□ 0.24
COL6A3-209ENST00000472056 TPM1P09493 284 aa16.54■□□□□ 0.24
COL6A3-209ENST00000472056 CFDP1Q9UEE9 299 aaPredicted RBP16.54■□□□□ 0.24
COL6A3-209ENST00000472056 VPS8Q8N3P4 1428 aa16.54■□□□□ 0.24
COL6A3-209ENST00000472056 AAMPQ13685 434 aa16.53■□□□□ 0.24
COL6A3-209ENST00000472056 BAZ1BQ9UIG0 1483 aaKnown RBP16.53■□□□□ 0.24
COL6A3-209ENST00000472056 HDGFP51858 240 aaKnown RBP16.53■□□□□ 0.24
COL6A3-209ENST00000472056 NAP1L2Q9ULW6 460 aaPredicted RBP16.53■□□□□ 0.24
COL6A3-209ENST00000472056 CWC15Q9P013 229 aaKnown RBP16.52■□□□□ 0.23
COL6A3-209ENST00000472056 ACBD3Q9H3P7 528 aa16.51■□□□□ 0.23
COL6A3-209ENST00000472056 CENPQQ7L2Z9 268 aaPredicted RBP16.5■□□□□ 0.23
COL6A3-209ENST00000472056 CLSTN1O94985 981 aa16.5■□□□□ 0.23
COL6A3-209ENST00000472056 DHX8Q14562 1220 aaKnown RBP16.49■□□□□ 0.23
COL6A3-209ENST00000472056 GOLGA6L19H0YKK7 550 aa16.48■□□□□ 0.23
COL6A3-209ENST00000472056 CDR1P51861 262 aa16.48■□□□□ 0.23
COL6A3-209ENST00000472056 CHMP7Q8WUX9 453 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-209ENST00000472056 CCDC66A2RUB6 948 aa16.48■□□□□ 0.23
COL6A3-209ENST00000472056 CEP89Q96ST8 783 aa16.47■□□□□ 0.23
COL6A3-209ENST00000472056 HIRIP3Q9BW71 556 aaPredicted RBP16.47■□□□□ 0.23
COL6A3-209ENST00000472056 ARGLU1Q9NWB6 273 aaPredicted RBP16.47■□□□□ 0.23
COL6A3-209ENST00000472056 LMOD3Q0VAK6 560 aa16.46■□□□□ 0.23
COL6A3-209ENST00000472056 RTF1Q92541 710 aaKnown RBP16.46■□□□□ 0.22
COL6A3-209ENST00000472056 TPM2P07951 284 aa16.45■□□□□ 0.22
COL6A3-209ENST00000472056 POGKQ9P215 609 aa16.45■□□□□ 0.22
COL6A3-209ENST00000472056 HOOK1Q9UJC3 728 aaKnown RBP16.45■□□□□ 0.22
COL6A3-209ENST00000472056 TAF3Q5VWG9 929 aa16.45■□□□□ 0.22
COL6A3-209ENST00000472056 FMN1Q68DA7 1419 aa16.45■□□□□ 0.22
COL6A3-209ENST00000472056 SPAG9O60271 1321 aaKnown RBP16.44■□□□□ 0.22
COL6A3-209ENST00000472056 LRRFIP1Q32MZ4 808 aaKnown RBP16.44■□□□□ 0.22
COL6A3-209ENST00000472056 C14orf37Q86TY3 774 aa16.44■□□□□ 0.22
COL6A3-209ENST00000472056 GZF1Q9H116 711 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-209ENST00000472056 ZNF771Q7L3S4 317 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-209ENST00000472056 KAT6BQ8WYB5 2073 aa16.44■□□□□ 0.22
COL6A3-209ENST00000472056 FAM161AQ3B820 660 aa16.43■□□□□ 0.22
COL6A3-209ENST00000472056 ISY1Q9ULR0 285 aaKnown RBP16.43■□□□□ 0.22
COL6A3-209ENST00000472056 SLKQ9H2G2 1235 aaPredicted RBP16.43■□□□□ 0.22
COL6A3-209ENST00000472056 DIAPH3Q9NSV4 1193 aa16.43■□□□□ 0.22
COL6A3-209ENST00000472056 TSHZ2Q9NRE2 1034 aa16.42■□□□□ 0.22
COL6A3-209ENST00000472056 IPO7O95373 1038 aaKnown RBP16.42■□□□□ 0.22
COL6A3-209ENST00000472056 NCBP3Q53F19 620 aaKnown RBP16.42■□□□□ 0.22
COL6A3-209ENST00000472056 KIF15Q9NS87 1388 aa16.42■□□□□ 0.22
COL6A3-209ENST00000472056 RRP12Q5JTH9 1297 aaKnown RBP16.42■□□□□ 0.22
COL6A3-209ENST00000472056 ZBED9Q6R2W3 1325 aa16.41■□□□□ 0.22
COL6A3-209ENST00000472056 PRM3Q9NNZ6 103 aa16.41■□□□□ 0.22
COL6A3-209ENST00000472056 NEUROD2Q15784 382 aa16.41■□□□□ 0.22
COL6A3-209ENST00000472056 MORC1Q86VD1 984 aa16.41■□□□□ 0.22
COL6A3-209ENST00000472056 U2SURPO15042 1029 aaKnown RBP16.41■□□□□ 0.22
COL6A3-209ENST00000472056 NLRP13Q86W25 1043 aa16.4■□□□□ 0.22
COL6A3-209ENST00000472056 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-209ENST00000472056 ANKRD20A12PQ8NF67 263 aa16.4■□□□□ 0.22
COL6A3-209ENST00000472056 AK7Q96M32 723 aa16.4■□□□□ 0.22
COL6A3-209ENST00000472056 A0A0G2JS52 829 aa16.39■□□□□ 0.21
COL6A3-209ENST00000472056 ROCK1Q13464 1354 aa16.39■□□□□ 0.21
COL6A3-209ENST00000472056 HMGN5P82970 282 aaKnown RBP16.39■□□□□ 0.21
COL6A3-209ENST00000472056 DCTN1Q14203 1278 aa16.39■□□□□ 0.21
COL6A3-209ENST00000472056 REC8O95072 547 aa16.38■□□□□ 0.21
COL6A3-209ENST00000472056 CC2D1BQ5T0F9 858 aaKnown RBP16.38■□□□□ 0.21
COL6A3-209ENST00000472056 CGNL1Q0VF96 1302 aa16.38■□□□□ 0.21
COL6A3-209ENST00000472056 VSIG10Q8N0Z9 540 aa16.38■□□□□ 0.21
COL6A3-209ENST00000472056 RGL3Q3MIN7 710 aa16.38■□□□□ 0.21
COL6A3-209ENST00000472056 NPHP1O15259 732 aa16.37■□□□□ 0.21
COL6A3-209ENST00000472056 FAM43AQ8N2R8 423 aa16.37■□□□□ 0.21
COL6A3-209ENST00000472056 ITPRIPQ8IWB1 547 aa16.37■□□□□ 0.21
COL6A3-209ENST00000472056 APPP05067 770 aa16.36■□□□□ 0.21
COL6A3-209ENST00000472056 BECN2A8MW95 431 aa16.36■□□□□ 0.21
COL6A3-209ENST00000472056 HSP90B2PQ58FF3 399 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms