RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 ILDR1Q86SU0 546 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-208ENST00000470268 CADPSQ9ULU8 1353 aa8.19□□□□□ -1.1
SF3B1-208ENST00000470268 NESP48681 1621 aa8.19□□□□□ -1.1
SF3B1-208ENST00000470268 CFTRP13569 1480 aa8.19□□□□□ -1.1
SF3B1-208ENST00000470268 CIZ1Q9ULV3 898 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-208ENST00000470268 TRIM41Q8WV44 630 aa8.18□□□□□ -1.1
SF3B1-208ENST00000470268 G3V3G9 751 aa8.17□□□□□ -1.1
SF3B1-208ENST00000470268 PLCB2Q00722 1185 aa8.15□□□□□ -1.1
SF3B1-208ENST00000470268 SPNS2Q8IVW8 549 aa8.14□□□□□ -1.11
SF3B1-208ENST00000470268 MARVELD3Q96A59 401 aa8.14□□□□□ -1.11
SF3B1-208ENST00000470268 CABP2Q9NPB3 220 aa8.14□□□□□ -1.11
SF3B1-208ENST00000470268 EMP3P54852 163 aa8.13□□□□□ -1.11
SF3B1-208ENST00000470268 LAMC3Q9Y6N6 1575 aa8.13□□□□□ -1.11
SF3B1-208ENST00000470268 RGL2O15211 777 aa8.13□□□□□ -1.11
SF3B1-208ENST00000470268 BOLA1Q9Y3E2 137 aa8.13□□□□□ -1.11
SF3B1-208ENST00000470268 MMRN1Q13201 1228 aa8.12□□□□□ -1.11
SF3B1-208ENST00000470268 DPY19L2Q6NUT2 758 aa8.1□□□□□ -1.11
SF3B1-208ENST00000470268 FANCD2Q9BXW9 1451 aa8.09□□□□□ -1.11
SF3B1-208ENST00000470268 BBXQ8WY36 941 aaPredicted RBP8.08□□□□□ -1.12
SF3B1-208ENST00000470268 PDS5BQ9NTI5 1447 aa8.08□□□□□ -1.12
SF3B1-208ENST00000470268 HS3ST6Q96QI5 342 aa8.07□□□□□ -1.12
SF3B1-208ENST00000470268 ABCC8Q09428 1581 aa8.06□□□□□ -1.12
SF3B1-208ENST00000470268 FAM205CA6NFA0 338 aa8.05□□□□□ -1.12
SF3B1-208ENST00000470268 DOK7Q18PE1 504 aa8.05□□□□□ -1.12
SF3B1-208ENST00000470268 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.05□□□□□ -1.12
SF3B1-208ENST00000470268 PRDM2Q13029 1718 aa8.05□□□□□ -1.12
SF3B1-208ENST00000470268 CEP164Q9UPV0 1460 aa8.04□□□□□ -1.12
SF3B1-208ENST00000470268 KIF21AQ7Z4S6 1674 aa8.04□□□□□ -1.12
SF3B1-208ENST00000470268 ZNF710Q8N1W2 664 aa8.04□□□□□ -1.12
SF3B1-208ENST00000470268 HOXB3P14651 431 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-208ENST00000470268 HOXB1P14653 301 aaPredicted RBP8.03□□□□□ -1.12
SF3B1-208ENST00000470268 ERCC6Q03468 1493 aa8.03□□□□□ -1.12
SF3B1-208ENST00000470268 WRNQ14191 1432 aaPredicted RBP eCLIP8.03□□□□□ -1.12
SF3B1-208ENST00000470268 EFCAB3Q8N7B9 438 aa8.03□□□□□ -1.12
SF3B1-208ENST00000470268 RIMBP2O15034 1052 aa8.02□□□□□ -1.13
SF3B1-208ENST00000470268 SOX12O15370 315 aa8.02□□□□□ -1.13
SF3B1-208ENST00000470268 CUX1P39880 1505 aa8.01□□□□□ -1.13
SF3B1-208ENST00000470268 URB2Q14146 1524 aaKnown RBP8.01□□□□□ -1.13
SF3B1-208ENST00000470268 POTEB3A0JP26 581 aa8.01□□□□□ -1.13
SF3B1-208ENST00000470268 POTEBQ6S5H4 581 aa8.01□□□□□ -1.13
SF3B1-208ENST00000470268 RNF25Q96BH1 459 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-208ENST00000470268 KRTAP3-3Q9BYR6 98 aa8.01□□□□□ -1.13
SF3B1-208ENST00000470268 KRTAP3-2Q9BYR7 98 aa8.01□□□□□ -1.13
SF3B1-208ENST00000470268 SYNJ1O43426 1573 aa8□□□□□ -1.13
SF3B1-208ENST00000470268 CHGAP10645 457 aaKnown RBP8□□□□□ -1.13
SF3B1-208ENST00000470268 HAP1P54257 671 aaPredicted RBP8□□□□□ -1.13
SF3B1-208ENST00000470268 TAOK2Q9UL54 1235 aa8□□□□□ -1.13
SF3B1-208ENST00000470268 RIOK3O14730 519 aaKnown RBP7.99□□□□□ -1.13
SF3B1-208ENST00000470268 MRC2Q9UBG0 1479 aa7.99□□□□□ -1.13
SF3B1-208ENST00000470268 TOPBP1Q92547 1522 aa7.99□□□□□ -1.13
SF3B1-208ENST00000470268 HS6ST3Q8IZP7 471 aa7.98□□□□□ -1.13
SF3B1-208ENST00000470268 ZSWIM6Q9HCJ5 1215 aa7.98□□□□□ -1.13
SF3B1-208ENST00000470268 VGFO15240 615 aaPredicted RBP7.98□□□□□ -1.13
SF3B1-208ENST00000470268 THOC2Q8NI27 1593 aaKnown RBP7.98□□□□□ -1.13
SF3B1-208ENST00000470268 ERBB3P21860 1342 aa7.97□□□□□ -1.13
SF3B1-208ENST00000470268 DNMBPQ6XZF7 1577 aa7.97□□□□□ -1.13
SF3B1-208ENST00000470268 MICALL2Q8IY33 904 aa7.96□□□□□ -1.13
SF3B1-208ENST00000470268 DNAJC5Q9H3Z4 198 aa7.96□□□□□ -1.13
SF3B1-208ENST00000470268 TOP2BQ02880 1626 aa7.96□□□□□ -1.13
SF3B1-208ENST00000470268 WDR62O43379 1518 aa7.96□□□□□ -1.14
SF3B1-208ENST00000470268 PAXIP1Q6ZW49 1069 aaPredicted RBP7.96□□□□□ -1.14
SF3B1-208ENST00000470268 SPRYD3Q8NCJ5 442 aa7.95□□□□□ -1.14
SF3B1-208ENST00000470268 BIVM-ERCC5R4GMW8 1640 aa7.95□□□□□ -1.14
SF3B1-208ENST00000470268 FGD5Q6ZNL6 1462 aa7.95□□□□□ -1.14
SF3B1-208ENST00000470268 POLA1P09884 1462 aaPredicted RBP7.94□□□□□ -1.14
SF3B1-208ENST00000470268 VSIG10Q8N0Z9 540 aa7.93□□□□□ -1.14
SF3B1-208ENST00000470268 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-208ENST00000470268 ZFP91Q96JP5 570 aaPredicted RBP7.93□□□□□ -1.14
SF3B1-208ENST00000470268 CFAP44Q96MT7 982 aa7.93□□□□□ -1.14
SF3B1-208ENST00000470268 CUX2O14529 1486 aa7.92□□□□□ -1.14
SF3B1-208ENST00000470268 RAD54L2Q9Y4B4 1467 aa7.92□□□□□ -1.14
SF3B1-208ENST00000470268 SOGA1O94964 1423 aa7.9□□□□□ -1.14
SF3B1-208ENST00000470268 NLRP6P59044 892 aa7.9□□□□□ -1.14
SF3B1-208ENST00000470268 TMEM92Q6UXU6 159 aa7.9□□□□□ -1.15
SF3B1-208ENST00000470268 MS4A4AQ96JQ5 239 aa7.9□□□□□ -1.15
SF3B1-208ENST00000470268 PHF8Q9UPP1 1060 aa7.9□□□□□ -1.15
SF3B1-208ENST00000470268 VARS2Q5ST30 1063 aaKnown RBP7.89□□□□□ -1.15
SF3B1-208ENST00000470268 ZNF687Q8N1G0 1237 aa7.88□□□□□ -1.15
SF3B1-208ENST00000470268 RUSC2Q8N2Y8 1516 aa7.88□□□□□ -1.15
SF3B1-208ENST00000470268 TARBP1Q13395 1621 aaKnown RBP7.87□□□□□ -1.15
SF3B1-208ENST00000470268 STK25O00506 426 aa7.87□□□□□ -1.15
SF3B1-208ENST00000470268 PTGER2P43116 358 aa7.87□□□□□ -1.15
SF3B1-208ENST00000470268 GPR153Q6NV75 609 aa7.87□□□□□ -1.15
SF3B1-208ENST00000470268 ABCA10Q8WWZ4 1543 aa7.87□□□□□ -1.15
SF3B1-208ENST00000470268 ZNF608Q9ULD9 1512 aaPredicted RBP7.86□□□□□ -1.15
SF3B1-208ENST00000470268 IFT140Q96RY7 1462 aa7.86□□□□□ -1.15
SF3B1-208ENST00000470268 TDRD9Q8NDG6 1382 aaKnown RBP7.86□□□□□ -1.15
SF3B1-208ENST00000470268 RNF166Q96A37 237 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-208ENST00000470268 NKX1-1Q15270 411 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-208ENST00000470268 FAM9AQ8IZU1 332 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-208ENST00000470268 AQRO60306 1485 aaKnown RBP eCLIP7.84□□□□□ -1.15
SF3B1-208ENST00000470268 WDR97A6NE52 1622 aa7.84□□□□□ -1.16
SF3B1-208ENST00000470268 FBXO22Q8NEZ5 403 aa7.83□□□□□ -1.16
SF3B1-208ENST00000470268 BCL11BQ9C0K0 894 aaPredicted RBP7.83□□□□□ -1.16
SF3B1-208ENST00000470268 TSHZ2Q9NRE2 1034 aa7.83□□□□□ -1.16
SF3B1-208ENST00000470268 MYT1LQ9UL68 1186 aa7.83□□□□□ -1.16
SF3B1-208ENST00000470268 KDM2AQ9Y2K7 1162 aa7.83□□□□□ -1.16
SF3B1-208ENST00000470268 KIF27Q86VH2 1401 aa7.82□□□□□ -1.16
SF3B1-208ENST00000470268 GTPBP6O43824 516 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-208ENST00000470268 STK24Q9Y6E0 443 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 375.8 ms