RNA–Protein interactions for RNA: ENST00000469739.6

TOP3A-203, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 3,196 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-203ENST00000469739 PPP1R15AO75807 674 aaPredicted RBP13.42□□□□□ -0.26
TOP3A-203ENST00000469739 NUP153P49790 1475 aaKnown RBP13.41□□□□□ -0.26
TOP3A-203ENST00000469739 JPH4Q96JJ6 628 aa13.4□□□□□ -0.26
TOP3A-203ENST00000469739 NAIPQ13075 1403 aa13.38□□□□□ -0.27
TOP3A-203ENST00000469739 CHD1O14646 1710 aa13.38□□□□□ -0.27
TOP3A-203ENST00000469739 TCOF1Q13428 1488 aaKnown RBP13.37□□□□□ -0.27
TOP3A-203ENST00000469739 ZNF326Q5BKZ1 582 aaKnown RBP13.36□□□□□ -0.27
TOP3A-203ENST00000469739 CFDP1Q9UEE9 299 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-203ENST00000469739 PRG4Q92954 1404 aaPredicted RBP13.36□□□□□ -0.27
TOP3A-203ENST00000469739 PLB1Q6P1J6 1458 aa13.35□□□□□ -0.27
TOP3A-203ENST00000469739 AMER1Q5JTC6 1135 aaPredicted RBP13.34□□□□□ -0.27
TOP3A-203ENST00000469739 MPHOSPH9Q99550 1183 aa13.34□□□□□ -0.27
TOP3A-203ENST00000469739 CDK11AQ9UQ88 783 aaPredicted RBP13.34□□□□□ -0.27
TOP3A-203ENST00000469739 HFM1A2PYH4 1435 aa13.34□□□□□ -0.27
TOP3A-203ENST00000469739 CARMIL2Q6F5E8 1435 aa13.34□□□□□ -0.27
TOP3A-203ENST00000469739 POLR3GLQ9BT43 218 aa13.32□□□□□ -0.28
TOP3A-203ENST00000469739 SLC4A1APQ9BWU0 796 aaKnown RBP13.32□□□□□ -0.28
TOP3A-203ENST00000469739 GCC2Q8IWJ2 1684 aa13.32□□□□□ -0.28
TOP3A-203ENST00000469739 MIA2Q96PC5 1412 aa13.31□□□□□ -0.28
TOP3A-203ENST00000469739 UACAQ9BZF9 1416 aa13.31□□□□□ -0.28
TOP3A-203ENST00000469739 ADCY10Q96PN6 1610 aa13.3□□□□□ -0.28
TOP3A-203ENST00000469739 ABCA8O94911 1581 aa13.3□□□□□ -0.28
TOP3A-203ENST00000469739 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
TOP3A-203ENST00000469739 L3MBTL2Q969R5 705 aa13.3□□□□□ -0.28
TOP3A-203ENST00000469739 BCANQ96GW7 911 aa13.29□□□□□ -0.28
TOP3A-203ENST00000469739 ANP32EQ9BTT0 268 aa13.29□□□□□ -0.28
TOP3A-203ENST00000469739 KDM6BO15054 1643 aa13.29□□□□□ -0.28
TOP3A-203ENST00000469739 KIF14Q15058 1648 aa13.28□□□□□ -0.28
TOP3A-203ENST00000469739 PLEKHD1A6NEE1 506 aa13.28□□□□□ -0.28
TOP3A-203ENST00000469739 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.28
TOP3A-203ENST00000469739 ITSN2Q9NZM3 1697 aa13.27□□□□□ -0.28
TOP3A-203ENST00000469739 ANP32CO43423 234 aa13.26□□□□□ -0.29
TOP3A-203ENST00000469739 SHROOM2Q13796 1616 aa13.26□□□□□ -0.29
TOP3A-203ENST00000469739 DNMT1P26358 1616 aaKnown RBP13.26□□□□□ -0.29
TOP3A-203ENST00000469739 HSPA5P11021 654 aaKnown RBP13.26□□□□□ -0.29
TOP3A-203ENST00000469739 HNRNPMP52272 730 aaKnown RBP eCLIP13.26□□□□□ -0.29
TOP3A-203ENST00000469739 AKNAQ7Z591 1439 aa13.25□□□□□ -0.29
TOP3A-203ENST00000469739 SENP3-EIF4A1A0A087X0R7 540 aa13.24□□□□□ -0.29
TOP3A-203ENST00000469739 ABCC5O15440 1437 aa13.22□□□□□ -0.29
TOP3A-203ENST00000469739 DAPK1P53355 1430 aa13.22□□□□□ -0.29
TOP3A-203ENST00000469739 CDC42BPAQ5VT25 1732 aa13.21□□□□□ -0.3
TOP3A-203ENST00000469739 NBPF8Q3BBV2 869 aa13.21□□□□□ -0.3
TOP3A-203ENST00000469739 KDM2AQ9Y2K7 1162 aa13.21□□□□□ -0.3
TOP3A-203ENST00000469739 ATP10BO94823 1461 aa13.2□□□□□ -0.3
TOP3A-203ENST00000469739 CAMSAP2Q08AD1 1489 aa13.2□□□□□ -0.3
TOP3A-203ENST00000469739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.2□□□□□ -0.36e-6■□□□□ 8.3
TOP3A-203ENST00000469739 CROCC2H7BZ55 1655 aa13.2□□□□□ -0.3
TOP3A-203ENST00000469739 PKD2Q13563 968 aa13.2□□□□□ -0.3
TOP3A-203ENST00000469739 GPATCH8Q9UKJ3 1502 aaKnown RBP13.19□□□□□ -0.3
TOP3A-203ENST00000469739 DENND4BO75064 1496 aaPredicted RBP13.19□□□□□ -0.3
TOP3A-203ENST00000469739 C11orf95C9JLR9 678 aaPredicted RBP13.19□□□□□ -0.3
TOP3A-203ENST00000469739 ADGBQ8N7X0 1667 aa13.18□□□□□ -0.3
TOP3A-203ENST00000469739 ERCC6L2Q5T890 1561 aa13.18□□□□□ -0.3
TOP3A-203ENST00000469739 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
TOP3A-203ENST00000469739 PTPRGP23470 1445 aa13.18□□□□□ -0.3
TOP3A-203ENST00000469739 WASHC2AQ641Q2 1341 aa13.17□□□□□ -0.3
TOP3A-203ENST00000469739 TSPY4P0CV99 314 aa13.17□□□□□ -0.3
TOP3A-203ENST00000469739 TSPY10P0CW01 314 aa13.17□□□□□ -0.3
TOP3A-203ENST00000469739 SUPT16HQ9Y5B9 1047 aaKnown RBP13.17□□□□□ -0.3
TOP3A-203ENST00000469739 ABCC10Q5T3U5 1492 aa13.17□□□□□ -0.3
TOP3A-203ENST00000469739 ROCK1Q13464 1354 aa13.16□□□□□ -0.3
TOP3A-203ENST00000469739 CLASP1Q7Z460 1538 aa13.16□□□□□ -0.3
TOP3A-203ENST00000469739 TPRNQ4KMQ1 711 aa13.16□□□□□ -0.3
TOP3A-203ENST00000469739 ERICH6Q7L0X2 663 aa13.14□□□□□ -0.31
TOP3A-203ENST00000469739 CCDC184Q52MB2 194 aa13.14□□□□□ -0.31
TOP3A-203ENST00000469739 FKBP8Q14318 412 aa13.13□□□□□ -0.31
TOP3A-203ENST00000469739 RGL3Q3MIN7 710 aa13.13□□□□□ -0.31
TOP3A-203ENST00000469739 HNRNPUQ00839 825 aaKnown RBP eCLIP13.12□□□□□ -0.31
TOP3A-203ENST00000469739 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
TOP3A-203ENST00000469739 NUP155O75694 1391 aa13.12□□□□□ -0.31
TOP3A-203ENST00000469739 FAM9BQ8IZU0 186 aa13.12□□□□□ -0.31
TOP3A-203ENST00000469739 IRX6P78412 446 aaPredicted RBP13.11□□□□□ -0.31
TOP3A-203ENST00000469739 TSHZ2Q9NRE2 1034 aa13.11□□□□□ -0.31
TOP3A-203ENST00000469739 ABCC2Q92887 1545 aa13.11□□□□□ -0.31
TOP3A-203ENST00000469739 PREX2Q70Z35 1606 aa13.1□□□□□ -0.31
TOP3A-203ENST00000469739 ANKRD30BQ9BXX2 1392 aa13.1□□□□□ -0.31
TOP3A-203ENST00000469739 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
TOP3A-203ENST00000469739 NCOA1Q15788 1441 aa13.1□□□□□ -0.31
TOP3A-203ENST00000469739 CDC42BPBQ9Y5S2 1711 aa13.1□□□□□ -0.31
TOP3A-203ENST00000469739 MYT1LQ9UL68 1186 aa13.09□□□□□ -0.31
TOP3A-203ENST00000469739 KDM5BQ9UGL1 1544 aa13.09□□□□□ -0.31
TOP3A-203ENST00000469739 ANKRD30AQ9BXX3 1397 aa13.08□□□□□ -0.32
TOP3A-203ENST00000469739 TTC37Q6PGP7 1564 aa13.07□□□□□ -0.32
TOP3A-203ENST00000469739 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
TOP3A-203ENST00000469739 PLEKHG5O94827 1062 aa13.07□□□□□ -0.32
TOP3A-203ENST00000469739 DCAF11Q8TEB1 546 aa13.07□□□□□ -0.32
TOP3A-203ENST00000469739 SHANK2Q9UPX8 1470 aa13.07□□□□□ -0.32
TOP3A-203ENST00000469739 SAMD9LQ8IVG5 1584 aa13.06□□□□□ -0.32
TOP3A-203ENST00000469739 PODXL2Q9NZ53 605 aa13.06□□□□□ -0.32
TOP3A-203ENST00000469739 ZCCHC11Q5TAX3 1644 aaKnown RBP13.05□□□□□ -0.32
TOP3A-203ENST00000469739 ARHGEF5Q12774 1597 aa13.05□□□□□ -0.32
TOP3A-203ENST00000469739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.04□□□□□ -0.32
TOP3A-203ENST00000469739 MYO5CQ9NQX4 1742 aa13.04□□□□□ -0.32
TOP3A-203ENST00000469739 KIF15Q9NS87 1388 aa13.03□□□□□ -0.32
TOP3A-203ENST00000469739 C9orf84Q5VXU9 1444 aa13.03□□□□□ -0.32
TOP3A-203ENST00000469739 MRS2Q9HD23 443 aa13.03□□□□□ -0.32
TOP3A-203ENST00000469739 PZPP20742 1482 aa13.02□□□□□ -0.32
TOP3A-203ENST00000469739 CCER2I3L3R5 266 aa13.02□□□□□ -0.32
TOP3A-203ENST00000469739 KIF7Q2M1P5 1343 aa13.02□□□□□ -0.32
TOP3A-203ENST00000469739 CARD11Q9BXL7 1154 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms