RNA–Protein interactions for RNA: ENST00000461239.2

ECHDC1-212, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 617 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-212ENST00000461239 NESP48681 1621 aa14.41□□□□□ -0.1
ECHDC1-212ENST00000461239 NCKAP5LQ9HCH0 1330 aa14.4□□□□□ -0.1
ECHDC1-212ENST00000461239 ARHGEF1Q92888 912 aaKnown RBP14.38□□□□□ -0.11
ECHDC1-212ENST00000461239 E2F4Q16254 413 aa14.37□□□□□ -0.11
ECHDC1-212ENST00000461239 SUPT5HO00267 1087 aaKnown RBP14.36□□□□□ -0.11
ECHDC1-212ENST00000461239 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.36□□□□□ -0.11
ECHDC1-212ENST00000461239 GOLGA2Q08379 1002 aa14.35□□□□□ -0.11
ECHDC1-212ENST00000461239 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
ECHDC1-212ENST00000461239 LMOD2Q6P5Q4 547 aa14.34□□□□□ -0.11
ECHDC1-212ENST00000461239 CRISPLD2Q9H0B8 497 aa14.33□□□□□ -0.12
ECHDC1-212ENST00000461239 CADPSQ9ULU8 1353 aa14.33□□□□□ -0.12
ECHDC1-212ENST00000461239 MFSD10Q14728 455 aa14.32□□□□□ -0.12
ECHDC1-212ENST00000461239 TIE1P35590 1138 aa14.31□□□□□ -0.12
ECHDC1-212ENST00000461239 PDE4AP27815 886 aa14.3□□□□□ -0.12
ECHDC1-212ENST00000461239 MKRN3Q13064 507 aaKnown RBP14.3□□□□□ -0.12
ECHDC1-212ENST00000461239 LARP6Q9BRS8 491 aaKnown RBP14.3□□□□□ -0.12
ECHDC1-212ENST00000461239 LAMC3Q9Y6N6 1575 aa14.3□□□□□ -0.12
ECHDC1-212ENST00000461239 TTLL13PA6NNM8 815 aa14.29□□□□□ -0.12
ECHDC1-212ENST00000461239 CLCN6P51797 869 aa14.29□□□□□ -0.12
ECHDC1-212ENST00000461239 ILDR1Q86SU0 546 aaPredicted RBP14.29□□□□□ -0.12
ECHDC1-212ENST00000461239 DCBLD2Q96PD2 775 aa14.28□□□□□ -0.12
ECHDC1-212ENST00000461239 CFTRP13569 1480 aa14.27□□□□□ -0.12
ECHDC1-212ENST00000461239 BMP2KQ9NSY1 1161 aaPredicted RBP14.25□□□□□ -0.13
ECHDC1-212ENST00000461239 DDX27Q96GQ7 796 aaKnown RBP14.24□□□□□ -0.13
ECHDC1-212ENST00000461239 TESPA1A2RU30 521 aaPredicted RBP14.23□□□□□ -0.13
ECHDC1-212ENST00000461239 SEMA3EO15041 775 aa14.23□□□□□ -0.13
ECHDC1-212ENST00000461239 OTUD5Q96G74 571 aa14.23□□□□□ -0.13
ECHDC1-212ENST00000461239 POTEMA6NI47 508 aa14.22□□□□□ -0.13
ECHDC1-212ENST00000461239 ERCC6Q03468 1493 aa14.21□□□□□ -0.13
ECHDC1-212ENST00000461239 ARIH1Q9Y4X5 557 aaPredicted RBP14.21□□□□□ -0.13
ECHDC1-212ENST00000461239 TULP1O00294 542 aaPredicted RBP14.2□□□□□ -0.14
ECHDC1-212ENST00000461239 CAMK2BQ13554 666 aa14.2□□□□□ -0.14
ECHDC1-212ENST00000461239 PDS5BQ9NTI5 1447 aa14.2□□□□□ -0.14
ECHDC1-212ENST00000461239 GALR2O43603 387 aaPredicted RBP14.19□□□□□ -0.14
ECHDC1-212ENST00000461239 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.19□□□□□ -0.142e-6■□□□□ 8.4
ECHDC1-212ENST00000461239 TRIM35Q9UPQ4 493 aa14.18□□□□□ -0.14
ECHDC1-212ENST00000461239 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
ECHDC1-212ENST00000461239 FANCD2Q9BXW9 1451 aa14.15□□□□□ -0.14
ECHDC1-212ENST00000461239 POTEGQ6S5H5 508 aa14.15□□□□□ -0.14
ECHDC1-212ENST00000461239 POTEB2H3BUK9 544 aa14.13□□□□□ -0.15
ECHDC1-212ENST00000461239 ZC3H15Q8WU90 426 aaKnown RBP14.13□□□□□ -0.15
ECHDC1-212ENST00000461239 THOC2Q8NI27 1593 aaKnown RBP14.13□□□□□ -0.15
ECHDC1-212ENST00000461239 GPHNQ9NQX3 736 aaPredicted RBP14.11□□□□□ -0.15
ECHDC1-212ENST00000461239 DPY19L2Q6NUT2 758 aa14.1□□□□□ -0.15
ECHDC1-212ENST00000461239 PPP1R15BQ5SWA1 713 aa14.09□□□□□ -0.15
ECHDC1-212ENST00000461239 CEP164Q9UPV0 1460 aa14.09□□□□□ -0.15
ECHDC1-212ENST00000461239 PDCD7Q8N8D1 485 aaKnown RBP14.08□□□□□ -0.16
ECHDC1-212ENST00000461239 PRDM2Q13029 1718 aa14.07□□□□□ -0.16
ECHDC1-212ENST00000461239 MRC2Q9UBG0 1479 aa14.06□□□□□ -0.16
ECHDC1-212ENST00000461239 MICALL2Q8IY33 904 aa14.06□□□□□ -0.16
ECHDC1-212ENST00000461239 ATN1P54259 1190 aaPredicted RBP14.05□□□□□ -0.16
ECHDC1-212ENST00000461239 CUX2O14529 1486 aa14.05□□□□□ -0.16
ECHDC1-212ENST00000461239 SMYD5Q6GMV2 418 aa14.04□□□□□ -0.16
ECHDC1-212ENST00000461239 URB2Q14146 1524 aaKnown RBP14.04□□□□□ -0.16
ECHDC1-212ENST00000461239 WDR62O43379 1518 aa14.03□□□□□ -0.16
ECHDC1-212ENST00000461239 IRX5P78411 483 aaPredicted RBP14.02□□□□□ -0.17
ECHDC1-212ENST00000461239 ATMINO43313 823 aaPredicted RBP14.01□□□□□ -0.17
ECHDC1-212ENST00000461239 DSG2Q14126 1118 aa14.01□□□□□ -0.17
ECHDC1-212ENST00000461239 TMEM132AQ24JP5 1023 aa14.01□□□□□ -0.17
ECHDC1-212ENST00000461239 EMILIN3Q9NT22 766 aa14.01□□□□□ -0.17
ECHDC1-212ENST00000461239 ASTLQ6HA08 431 aaPredicted RBP14□□□□□ -0.17
ECHDC1-212ENST00000461239 BRPF1P55201 1214 aaPredicted RBP13.98□□□□□ -0.17
ECHDC1-212ENST00000461239 FOXK1P85037 733 aa13.98□□□□□ -0.17
ECHDC1-212ENST00000461239 TMEM121BQ9BXQ6 578 aaPredicted RBP13.98□□□□□ -0.17
ECHDC1-212ENST00000461239 ZMYND10O75800 440 aa13.97□□□□□ -0.17
ECHDC1-212ENST00000461239 MLLT3P42568 568 aaPredicted RBP13.97□□□□□ -0.17
ECHDC1-212ENST00000461239 IER5LQ5T953 404 aa13.97□□□□□ -0.17
ECHDC1-212ENST00000461239 SLC24A3Q9HC58 644 aa13.97□□□□□ -0.17
ECHDC1-212ENST00000461239 OCEL1Q9H607 264 aa13.96□□□□□ -0.17
ECHDC1-212ENST00000461239 PCDH10Q9P2E7 1040 aa13.96□□□□□ -0.17
ECHDC1-212ENST00000461239 DPYSL4O14531 572 aa13.95□□□□□ -0.18
ECHDC1-212ENST00000461239 TMC2Q8TDI7 906 aa13.95□□□□□ -0.18
ECHDC1-212ENST00000461239 TOPBP1Q92547 1522 aa13.95□□□□□ -0.18
ECHDC1-212ENST00000461239 PDIA6Q15084 440 aa13.93□□□□□ -0.18
ECHDC1-212ENST00000461239 BOLA1Q9Y3E2 137 aa13.93□□□□□ -0.18
ECHDC1-212ENST00000461239 GTF3C3Q9Y5Q9 886 aa13.93□□□□□ -0.18
ECHDC1-212ENST00000461239 KIF3CO14782 793 aa13.92□□□□□ -0.18
ECHDC1-212ENST00000461239 RBM26Q5T8P6 1007 aaKnown RBP13.92□□□□□ -0.18
ECHDC1-212ENST00000461239 DNMBPQ6XZF7 1577 aa13.91□□□□□ -0.18
ECHDC1-212ENST00000461239 C2orf72A6NCS6 295 aa13.9□□□□□ -0.18
ECHDC1-212ENST00000461239 CUX1P39880 1505 aa13.9□□□□□ -0.19
ECHDC1-212ENST00000461239 SPDYE16A6NNV3 312 aaPredicted RBP13.89□□□□□ -0.19
ECHDC1-212ENST00000461239 BARGINQ6ZT62 677 aa13.89□□□□□ -0.19
ECHDC1-212ENST00000461239 ABCC8Q09428 1581 aa13.88□□□□□ -0.19
ECHDC1-212ENST00000461239 PLPP6Q8IY26 295 aa13.88□□□□□ -0.19
ECHDC1-212ENST00000461239 GPIHBP1Q8IV16 184 aa13.86□□□□□ -0.19
ECHDC1-212ENST00000461239 PLCG2P16885 1265 aa13.85□□□□□ -0.19
ECHDC1-212ENST00000461239 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
ECHDC1-212ENST00000461239 TIMELESSQ9UNS1 1208 aa13.85□□□□□ -0.19
ECHDC1-212ENST00000461239 NEUROD2Q15784 382 aa13.84□□□□□ -0.19
ECHDC1-212ENST00000461239 POLA1P09884 1462 aaPredicted RBP13.84□□□□□ -0.19
ECHDC1-212ENST00000461239 G3V3G9 751 aa13.82□□□□□ -0.2
ECHDC1-212ENST00000461239 TMEM92Q6UXU6 159 aa13.81□□□□□ -0.2
ECHDC1-212ENST00000461239 WRNQ14191 1432 aaPredicted RBP eCLIP13.81□□□□□ -0.2
ECHDC1-212ENST00000461239 FGD5Q6ZNL6 1462 aa13.8□□□□□ -0.2
ECHDC1-212ENST00000461239 IFT140Q96RY7 1462 aa13.8□□□□□ -0.2
ECHDC1-212ENST00000461239 RAD54L2Q9Y4B4 1467 aa13.8□□□□□ -0.2
ECHDC1-212ENST00000461239 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
ECHDC1-212ENST00000461239 L3MBTL3Q96JM7 780 aaPredicted RBP13.8□□□□□ -0.2
ECHDC1-212ENST00000461239 SYNJ1O43426 1573 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms