RNA–Protein interactions for RNA: ENST00000461221.5

BRCA1-205, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 5,693 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-205ENST00000461221 GOLGA3Q08378 1498 aa11.34□□□□□ -0.59
BRCA1-205ENST00000461221 EEA1Q15075 1411 aa11.34□□□□□ -0.59
BRCA1-205ENST00000461221 SPRYD3Q8NCJ5 442 aa11.34□□□□□ -0.59
BRCA1-205ENST00000461221 CALD1Q05682 793 aaKnown RBP11.33□□□□□ -0.6
BRCA1-205ENST00000461221 CHMP4AQ9BY43 222 aa11.33□□□□□ -0.6
BRCA1-205ENST00000461221 KANK1Q14678 1352 aa11.31□□□□□ -0.6
BRCA1-205ENST00000461221 MORC1Q86VD1 984 aa11.31□□□□□ -0.6
BRCA1-205ENST00000461221 CEP89Q96ST8 783 aa11.31□□□□□ -0.6
BRCA1-205ENST00000461221 RWDD1Q9H446 243 aaPredicted RBP11.31□□□□□ -0.6
BRCA1-205ENST00000461221 SETQ01105 290 aaPredicted RBP11.3□□□□□ -0.6
BRCA1-205ENST00000461221 TMX4Q9H1E5 349 aaPredicted RBP11.3□□□□□ -0.6
BRCA1-205ENST00000461221 GPATCH3Q96I76 525 aa11.3□□□□□ -0.6
BRCA1-205ENST00000461221 TPM3P06753 285 aa11.29□□□□□ -0.6
BRCA1-205ENST00000461221 HDAC5Q9UQL6 1122 aa11.29□□□□□ -0.6
BRCA1-205ENST00000461221 GOLGA6L3A6NEY3 463 aa11.29□□□□□ -0.6
BRCA1-205ENST00000461221 HSP90B1P14625 803 aaKnown RBP11.28□□□□□ -0.6
BRCA1-205ENST00000461221 SRPK2P78362 688 aaKnown RBP11.28□□□□□ -0.6
BRCA1-205ENST00000461221 CCER2I3L3R5 266 aa11.27□□□□□ -0.6
BRCA1-205ENST00000461221 PHF14O94880 888 aa11.27□□□□□ -0.61
BRCA1-205ENST00000461221 CEP162Q5TB80 1403 aa11.27□□□□□ -0.61
BRCA1-205ENST00000461221 TCERG1O14776 1098 aaKnown RBP11.26□□□□□ -0.61
BRCA1-205ENST00000461221 HDGFL2Q7Z4V5 671 aaPredicted RBP11.26□□□□□ -0.61
BRCA1-205ENST00000461221 RASSF8Q8NHQ8 419 aa11.26□□□□□ -0.61
BRCA1-205ENST00000461221 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
BRCA1-205ENST00000461221 KTN1Q86UP2 1357 aaKnown RBP11.25□□□□□ -0.61
BRCA1-205ENST00000461221 APBB1O00213 710 aa11.25□□□□□ -0.61
BRCA1-205ENST00000461221 GORABQ5T7V8 394 aa11.25□□□□□ -0.61
BRCA1-205ENST00000461221 ARID3AQ99856 593 aa11.24□□□□□ -0.61
BRCA1-205ENST00000461221 GZF1Q9H116 711 aaPredicted RBP11.24□□□□□ -0.61
BRCA1-205ENST00000461221 KIF3AQ9Y496 699 aa11.24□□□□□ -0.61
BRCA1-205ENST00000461221 ITPRIPQ8IWB1 547 aa11.24□□□□□ -0.61
BRCA1-205ENST00000461221 TIMELESSQ9UNS1 1208 aa11.24□□□□□ -0.61
BRCA1-205ENST00000461221 HMMRO75330 724 aa11.24□□□□□ -0.61
BRCA1-205ENST00000461221 RBM19Q9Y4C8 960 aaKnown RBP11.22□□□□□ -0.61
BRCA1-205ENST00000461221 SOX12O15370 315 aa11.22□□□□□ -0.61
BRCA1-205ENST00000461221 DCAF11Q8TEB1 546 aa11.22□□□□□ -0.61
BRCA1-205ENST00000461221 PDE4CQ08493 712 aa11.22□□□□□ -0.61
BRCA1-205ENST00000461221 STK31Q9BXU1 1019 aa11.22□□□□□ -0.61
BRCA1-205ENST00000461221 SLKQ9H2G2 1235 aaPredicted RBP11.22□□□□□ -0.61
BRCA1-205ENST00000461221 CCNB3Q8WWL7 1395 aa11.22□□□□□ -0.61
BRCA1-205ENST00000461221 SPAG9O60271 1321 aaKnown RBP11.21□□□□□ -0.61
BRCA1-205ENST00000461221 CCDC180Q9P1Z9 1646 aa11.21□□□□□ -0.61
BRCA1-205ENST00000461221 TAF7LQ5H9L4 462 aa11.21□□□□□ -0.61
BRCA1-205ENST00000461221 CHMP4CQ96CF2 233 aa11.21□□□□□ -0.62
BRCA1-205ENST00000461221 GPS2Q13227 327 aa11.2□□□□□ -0.62
BRCA1-205ENST00000461221 SIN3AQ96ST3 1273 aa11.2□□□□□ -0.62
BRCA1-205ENST00000461221 TSR1Q2NL82 804 aaKnown RBP11.2□□□□□ -0.62
BRCA1-205ENST00000461221 CCDC70Q6NSX1 233 aa11.2□□□□□ -0.62
BRCA1-205ENST00000461221 RCAN3Q9UKA8 241 aa11.2□□□□□ -0.62
BRCA1-205ENST00000461221 MFAP1P55081 439 aaKnown RBP11.19□□□□□ -0.62
BRCA1-205ENST00000461221 KIF16BQ96L93 1317 aa11.19□□□□□ -0.62
BRCA1-205ENST00000461221 TRIM6-TRIM34B2RNG4 842 aa11.19□□□□□ -0.62
BRCA1-205ENST00000461221 CREBRFQ8IUR6 639 aa11.19□□□□□ -0.62
BRCA1-205ENST00000461221 MARCH6O60337 910 aa11.19□□□□□ -0.62
BRCA1-205ENST00000461221 TPM2P07951 284 aa11.19□□□□□ -0.62
BRCA1-205ENST00000461221 KIF27Q86VH2 1401 aa11.18□□□□□ -0.62
BRCA1-205ENST00000461221 CSB-PGBD3P0DP91 1061 aa11.18□□□□□ -0.62
BRCA1-205ENST00000461221 ST18O60284 1047 aa11.18□□□□□ -0.62
BRCA1-205ENST00000461221 RALBP1Q15311 655 aa11.18□□□□□ -0.62
BRCA1-205ENST00000461221 CEP164Q9UPV0 1460 aa11.18□□□□□ -0.62
BRCA1-205ENST00000461221 ZNF330Q9Y3S2 320 aaPredicted RBP11.18□□□□□ -0.62
BRCA1-205ENST00000461221 CALRP27797 417 aaKnown RBP11.18□□□□□ -0.62
BRCA1-205ENST00000461221 SF3A1Q15459 793 aaKnown RBP11.18□□□□□ -0.62
BRCA1-205ENST00000461221 DDX11L8A8MPP1 907 aa11.17□□□□□ -0.62
BRCA1-205ENST00000461221 TPM1P09493 284 aa11.17□□□□□ -0.62
BRCA1-205ENST00000461221 TPD52L1Q16890 204 aaPredicted RBP11.17□□□□□ -0.62
BRCA1-205ENST00000461221 G3V3G9 751 aa11.17□□□□□ -0.62
BRCA1-205ENST00000461221 U2AF1L5P0DN76 240 aaPredicted RBP11.17□□□□□ -0.62
BRCA1-205ENST00000461221 U2AF1Q01081 240 aaKnown RBP eCLIP11.17□□□□□ -0.62
BRCA1-205ENST00000461221 DCAF8Q5TAQ9 597 aa11.17□□□□□ -0.62
BRCA1-205ENST00000461221 CHMP3Q9Y3E7 222 aa11.17□□□□□ -0.62
BRCA1-205ENST00000461221 TNIKQ9UKE5 1360 aa11.16□□□□□ -0.62
BRCA1-205ENST00000461221 FHAD1B1AJZ9 1412 aa11.15□□□□□ -0.63
BRCA1-205ENST00000461221 VPS53Q5VIR6 699 aa11.14□□□□□ -0.63
BRCA1-205ENST00000461221 EIF3AQ14152 1382 aaKnown RBP11.14□□□□□ -0.63
BRCA1-205ENST00000461221 LMOD3Q0VAK6 560 aa11.14□□□□□ -0.63
BRCA1-205ENST00000461221 IPO9Q96P70 1041 aaKnown RBP11.14□□□□□ -0.63
BRCA1-205ENST00000461221 HSP90AA2PQ14568 343 aaPredicted RBP11.14□□□□□ -0.63
BRCA1-205ENST00000461221 SMC4Q9NTJ3 1288 aa11.14□□□□□ -0.63
BRCA1-205ENST00000461221 ATP6V1DQ9Y5K8 247 aa11.14□□□□□ -0.63
BRCA1-205ENST00000461221 GOLGA6L19H0YKK7 550 aa11.13□□□□□ -0.63
BRCA1-205ENST00000461221 PES1O00541 588 aaKnown RBP11.13□□□□□ -0.63
BRCA1-205ENST00000461221 SAFB2Q14151 953 aaKnown RBP eCLIP11.13□□□□□ -0.631e-6■□□□□ 10.7
BRCA1-205ENST00000461221 TOMM22Q9NS69 142 aa11.13□□□□□ -0.63
BRCA1-205ENST00000461221 PAK3O75914 559 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-205ENST00000461221 RSPH6AQ9H0K4 717 aa11.13□□□□□ -0.63
BRCA1-205ENST00000461221 HSPA5P11021 654 aaKnown RBP11.13□□□□□ -0.63
BRCA1-205ENST00000461221 H3BQV1 296 aa11.12□□□□□ -0.63
BRCA1-205ENST00000461221 SKOR2Q2VWA4 1001 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-205ENST00000461221 IFFO2Q5TF58 517 aa11.12□□□□□ -0.63
BRCA1-205ENST00000461221 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-205ENST00000461221 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.631e-6■■■■■ 58.5
BRCA1-205ENST00000461221 AKAP17AQ02040 695 aaKnown RBP11.11□□□□□ -0.63
BRCA1-205ENST00000461221 BECN2A8MW95 431 aa11.11□□□□□ -0.63
BRCA1-205ENST00000461221 NOL8Q76FK4 1167 aaKnown RBP11.1□□□□□ -0.63
BRCA1-205ENST00000461221 CCAR2Q8N163 923 aaKnown RBP11.1□□□□□ -0.63
BRCA1-205ENST00000461221 FAM184AQ8NB25 1140 aa11.1□□□□□ -0.63
BRCA1-205ENST00000461221 STK26Q9P289 416 aa11.1□□□□□ -0.63
BRCA1-205ENST00000461221 FRAT2O75474 233 aaPredicted RBP11.1□□□□□ -0.63
BRCA1-205ENST00000461221 IPO7O95373 1038 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms