RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FYCO1Q9BQS8 1478 aa15.65■□□□□ 0.1
NPHP4-204ENST00000460696 HNRNPMP52272 730 aaKnown RBP eCLIP15.65■□□□□ 0.1
NPHP4-204ENST00000460696 NUP155O75694 1391 aa15.64■□□□□ 0.09
NPHP4-204ENST00000460696 NPM2Q86SE8 214 aaKnown RBP15.63■□□□□ 0.09
NPHP4-204ENST00000460696 EFCAB2Q5VUJ9 269 aa15.62■□□□□ 0.09
NPHP4-204ENST00000460696 UACAQ9BZF9 1416 aa15.62■□□□□ 0.09
NPHP4-204ENST00000460696 DNMBPQ6XZF7 1577 aa15.61■□□□□ 0.09
NPHP4-204ENST00000460696 RTL5Q5HYW3 569 aaPredicted RBP15.6■□□□□ 0.09
NPHP4-204ENST00000460696 B4GALNT3Q6L9W6 998 aa15.6■□□□□ 0.09
NPHP4-204ENST00000460696 ABCA10Q8WWZ4 1543 aa15.6■□□□□ 0.09
NPHP4-204ENST00000460696 ANKRD30AQ9BXX3 1397 aa15.59■□□□□ 0.09
NPHP4-204ENST00000460696 TSHZ2Q9NRE2 1034 aa15.58■□□□□ 0.08
NPHP4-204ENST00000460696 PCF11O94913 1555 aaKnown RBP15.57■□□□□ 0.08
NPHP4-204ENST00000460696 C14orf37Q86TY3 774 aa15.57■□□□□ 0.08
NPHP4-204ENST00000460696 EFCAB5A4FU69 1503 aa15.57■□□□□ 0.08
NPHP4-204ENST00000460696 ANP32AP39687 249 aaKnown RBP15.57■□□□□ 0.08
NPHP4-204ENST00000460696 CANXP27824 592 aaKnown RBP15.56■□□□□ 0.08
NPHP4-204ENST00000460696 WDR97A6NE52 1622 aa15.56■□□□□ 0.08
NPHP4-204ENST00000460696 CC2D1BQ5T0F9 858 aaKnown RBP15.55■□□□□ 0.08
NPHP4-204ENST00000460696 WDR43Q15061 677 aaKnown RBP eCLIP15.55■□□□□ 0.08
NPHP4-204ENST00000460696 PPP4R2Q9NY27 417 aa15.54■□□□□ 0.08
NPHP4-204ENST00000460696 KIF3BO15066 747 aa15.52■□□□□ 0.07
NPHP4-204ENST00000460696 RAPGEF3O95398 923 aa15.52■□□□□ 0.07
NPHP4-204ENST00000460696 PRKRIP1Q9H875 184 aaPredicted RBP15.52■□□□□ 0.07
NPHP4-204ENST00000460696 HFM1A2PYH4 1435 aa15.51■□□□□ 0.07
NPHP4-204ENST00000460696 WASHC2AQ641Q2 1341 aa15.5■□□□□ 0.07
NPHP4-204ENST00000460696 RBM19Q9Y4C8 960 aaKnown RBP15.5■□□□□ 0.07
NPHP4-204ENST00000460696 DNAJC5Q9H3Z4 198 aa15.5■□□□□ 0.07
NPHP4-204ENST00000460696 KNSTRNQ9Y448 316 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 KIF21AQ7Z4S6 1674 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 PRDM2Q13029 1718 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 NAIPQ13075 1403 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 ST20-MTHFSA0A0A6YYL1 179 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 AFAP1Q8N556 730 aa15.48■□□□□ 0.07
NPHP4-204ENST00000460696 MAP3K1Q13233 1512 aa15.47■□□□□ 0.07
NPHP4-204ENST00000460696 ROCK2O75116 1388 aaKnown RBP15.46■□□□□ 0.07
NPHP4-204ENST00000460696 ANP32EQ9BTT0 268 aa15.45■□□□□ 0.06
NPHP4-204ENST00000460696 SPAG9O60271 1321 aaKnown RBP15.45■□□□□ 0.06
NPHP4-204ENST00000460696 SYNJ2O15056 1496 aa15.45■□□□□ 0.06
NPHP4-204ENST00000460696 NBPF8Q3BBV2 869 aa15.44■□□□□ 0.06
NPHP4-204ENST00000460696 NUTM2DQ5VT03 806 aaPredicted RBP15.44■□□□□ 0.06
NPHP4-204ENST00000460696 CDK13Q14004 1512 aaKnown RBP15.44■□□□□ 0.06
NPHP4-204ENST00000460696 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.44■□□□□ 0.06
NPHP4-204ENST00000460696 NBR1Q14596 966 aa15.44■□□□□ 0.06
NPHP4-204ENST00000460696 BCL11AQ9H165 835 aa15.44■□□□□ 0.06
NPHP4-204ENST00000460696 TMF1P82094 1093 aa15.43■□□□□ 0.06
NPHP4-204ENST00000460696 EHBP1L1Q8N3D4 1523 aa15.42■□□□□ 0.06
NPHP4-204ENST00000460696 KIF7Q2M1P5 1343 aa15.42■□□□□ 0.06
NPHP4-204ENST00000460696 USP47Q96K76 1375 aa15.42■□□□□ 0.06
NPHP4-204ENST00000460696 CCDC7Q96M83 1385 aa15.41■□□□□ 0.06
NPHP4-204ENST00000460696 GRIN2AQ12879 1464 aa15.4■□□□□ 0.06
NPHP4-204ENST00000460696 EPRSP07814 1512 aaKnown RBP15.4■□□□□ 0.06
NPHP4-204ENST00000460696 CUL7Q14999 1698 aa15.39■□□□□ 0.05
NPHP4-204ENST00000460696 ZBTB47Q9UFB7 747 aaPredicted RBP15.39■□□□□ 0.05
NPHP4-204ENST00000460696 MAPKBP1O60336 1514 aa15.39■□□□□ 0.05
NPHP4-204ENST00000460696 CDCA8Q53HL2 280 aa15.39■□□□□ 0.05
NPHP4-204ENST00000460696 PTPRKQ15262 1439 aa15.38■□□□□ 0.05
NPHP4-204ENST00000460696 TNNT2P45379 298 aaPredicted RBP15.38■□□□□ 0.05
NPHP4-204ENST00000460696 CCDC184Q52MB2 194 aa15.38■□□□□ 0.05
NPHP4-204ENST00000460696 RSPH4AQ5TD94 716 aa15.37■□□□□ 0.05
NPHP4-204ENST00000460696 SUPT6HQ7KZ85 1726 aaKnown RBP15.37■□□□□ 0.05
NPHP4-204ENST00000460696 ANKRD50Q9ULJ7 1429 aa15.37■□□□□ 0.05
NPHP4-204ENST00000460696 NEUROD2Q15784 382 aa15.37■□□□□ 0.05
NPHP4-204ENST00000460696 MIA2Q96PC5 1412 aa15.37■□□□□ 0.05
NPHP4-204ENST00000460696 WASHC2CQ9Y4E1 1318 aa15.36■□□□□ 0.05
NPHP4-204ENST00000460696 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.36■□□□□ 0.05
NPHP4-204ENST00000460696 KTN1Q86UP2 1357 aaKnown RBP15.35■□□□□ 0.05
NPHP4-204ENST00000460696 KIF15Q9NS87 1388 aa15.34■□□□□ 0.05
NPHP4-204ENST00000460696 NEFMP07197 916 aa15.34■□□□□ 0.05
NPHP4-204ENST00000460696 MAGI1Q96QZ7 1491 aaPredicted RBP15.34■□□□□ 0.05
NPHP4-204ENST00000460696 RALBP1Q15311 655 aa15.34■□□□□ 0.05
NPHP4-204ENST00000460696 NUDCQ9Y266 331 aa15.34■□□□□ 0.05
NPHP4-204ENST00000460696 IQGAP2Q13576 1575 aa15.33■□□□□ 0.05
NPHP4-204ENST00000460696 CNTLNQ9NXG0 1405 aa15.33■□□□□ 0.04
NPHP4-204ENST00000460696 C11orf95C9JLR9 678 aaPredicted RBP15.33■□□□□ 0.04
NPHP4-204ENST00000460696 LMOD2Q6P5Q4 547 aa15.33■□□□□ 0.04
NPHP4-204ENST00000460696 CCDC144AA2RUR9 1427 aa15.33■□□□□ 0.04
NPHP4-204ENST00000460696 HECW1Q76N89 1606 aa15.33■□□□□ 0.04
NPHP4-204ENST00000460696 SAFB2Q14151 953 aaKnown RBP eCLIP15.33■□□□□ 0.04
NPHP4-204ENST00000460696 ZBTB7CA1YPR0 619 aa15.32■□□□□ 0.04
NPHP4-204ENST00000460696 DAPK1P53355 1430 aa15.32■□□□□ 0.04
NPHP4-204ENST00000460696 PLB1Q6P1J6 1458 aa15.32■□□□□ 0.04
NPHP4-204ENST00000460696 TROQ12816 1431 aaPredicted RBP15.31■□□□□ 0.04
NPHP4-204ENST00000460696 KIAA0586Q9BVV6 1533 aa15.31■□□□□ 0.04
NPHP4-204ENST00000460696 ZBED9Q6R2W3 1325 aa15.31■□□□□ 0.04
NPHP4-204ENST00000460696 PTPN23Q9H3S7 1636 aa15.31■□□□□ 0.04
NPHP4-204ENST00000460696 NLRP13Q86W25 1043 aa15.3■□□□□ 0.04
NPHP4-204ENST00000460696 ERICH6BQ5W0A0 696 aa15.3■□□□□ 0.04
NPHP4-204ENST00000460696 RCAN3Q9UKA8 241 aa15.29■□□□□ 0.04
NPHP4-204ENST00000460696 PANK3Q9H999 370 aa15.28■□□□□ 0.04
NPHP4-204ENST00000460696 KANK1Q14678 1352 aa15.28■□□□□ 0.04
NPHP4-204ENST00000460696 A0A0G2JS52 829 aa15.28■□□□□ 0.04
NPHP4-204ENST00000460696 WDR62O43379 1518 aa15.26■□□□□ 0.03
NPHP4-204ENST00000460696 STK26Q9P289 416 aa15.26■□□□□ 0.03
NPHP4-204ENST00000460696 MYBBP1AQ9BQG0 1328 aaKnown RBP15.26■□□□□ 0.03
NPHP4-204ENST00000460696 ABCC5O15440 1437 aa15.25■□□□□ 0.03
NPHP4-204ENST00000460696 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
NPHP4-204ENST00000460696 ANKRD30BQ9BXX2 1392 aa15.24■□□□□ 0.03
NPHP4-204ENST00000460696 NBPF1Q3BBV0 1214 aa15.24■□□□□ 0.03
NPHP4-204ENST00000460696 NUTM2FA1L443 756 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms