RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 TRIM52Q96A61 297 aa17.71■□□□□ 0.42
LINC00959-201ENST00000456581 TROQ12816 1431 aaPredicted RBP17.7■□□□□ 0.42
LINC00959-201ENST00000456581 KIF14Q15058 1648 aa17.7■□□□□ 0.42
LINC00959-201ENST00000456581 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
LINC00959-201ENST00000456581 UACAQ9BZF9 1416 aa17.69■□□□□ 0.42
LINC00959-201ENST00000456581 CFDP1Q9UEE9 299 aaPredicted RBP17.69■□□□□ 0.42
LINC00959-201ENST00000456581 SHROOM2Q13796 1616 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 FOXD1Q16676 465 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 ATP10BO94823 1461 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 PTPRGP23470 1445 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 ABCC5O15440 1437 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 PLEKHD1A6NEE1 506 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 DAPK1P53355 1430 aa17.65■□□□□ 0.42
LINC00959-201ENST00000456581 ABCA8O94911 1581 aa17.65■□□□□ 0.42
LINC00959-201ENST00000456581 ERCC6L2Q5T890 1561 aa17.64■□□□□ 0.41
LINC00959-201ENST00000456581 GPATCH8Q9UKJ3 1502 aaKnown RBP17.64■□□□□ 0.41
LINC00959-201ENST00000456581 FKBP8Q14318 412 aa17.63■□□□□ 0.41
LINC00959-201ENST00000456581 PPP1R15AO75807 674 aaPredicted RBP17.62■□□□□ 0.41
LINC00959-201ENST00000456581 DENND4BO75064 1496 aaPredicted RBP17.61■□□□□ 0.41
LINC00959-201ENST00000456581 CAMSAP2Q08AD1 1489 aa17.6■□□□□ 0.41
LINC00959-201ENST00000456581 GCC2Q8IWJ2 1684 aa17.59■□□□□ 0.41
LINC00959-201ENST00000456581 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
LINC00959-201ENST00000456581 MPHOSPH9Q99550 1183 aa17.58■□□□□ 0.41
LINC00959-201ENST00000456581 DNMT1P26358 1616 aaKnown RBP17.57■□□□□ 0.4
LINC00959-201ENST00000456581 AKNAQ7Z591 1439 aa17.55■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3CA6NJZ7 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3BA6NNM3 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3Q9UFD9 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 ADCY10Q96PN6 1610 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 ABCC10Q5T3U5 1492 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 HNRNPMP52272 730 aaKnown RBP eCLIP17.53■□□□□ 0.4
LINC00959-201ENST00000456581 TIMELESSQ9UNS1 1208 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 CDC42BPAQ5VT25 1732 aa17.52■□□□□ 0.4
LINC00959-201ENST00000456581 ROCK1Q13464 1354 aa17.52■□□□□ 0.39
LINC00959-201ENST00000456581 ITSN2Q9NZM3 1697 aa17.51■□□□□ 0.39
LINC00959-201ENST00000456581 NCOA1Q15788 1441 aa17.5■□□□□ 0.39
LINC00959-201ENST00000456581 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
LINC00959-201ENST00000456581 KDM5BQ9UGL1 1544 aa17.47■□□□□ 0.39
LINC00959-201ENST00000456581 IRX6P78412 446 aaPredicted RBP17.46■□□□□ 0.39
LINC00959-201ENST00000456581 ANP32EQ9BTT0 268 aa17.46■□□□□ 0.39
LINC00959-201ENST00000456581 L3MBTL2Q969R5 705 aa17.44■□□□□ 0.38
LINC00959-201ENST00000456581 ANP32CO43423 234 aa17.43■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD30AQ9BXX3 1397 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 C9orf84Q5VXU9 1444 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 TSPY4P0CV99 314 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 TSPY10P0CW01 314 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 CROCC2H7BZ55 1655 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 PZPP20742 1482 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 ABCC2Q92887 1545 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 CDC42BPBQ9Y5S2 1711 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 TTC37Q6PGP7 1564 aa17.39■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.37
LINC00959-201ENST00000456581 RBM19Q9Y4C8 960 aaKnown RBP17.39■□□□□ 0.37
LINC00959-201ENST00000456581 ADGBQ8N7X0 1667 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 ADGRL2O95490 1459 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 PKD2Q13563 968 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 MBD5Q9P267 1494 aa17.37■□□□□ 0.37
LINC00959-201ENST00000456581 SAMD9LQ8IVG5 1584 aa17.37■□□□□ 0.37
LINC00959-201ENST00000456581 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.37■□□□□ 0.37
LINC00959-201ENST00000456581 NBPF8Q3BBV2 869 aa17.35■□□□□ 0.37
LINC00959-201ENST00000456581 KIF15Q9NS87 1388 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 ARHGAP5Q13017 1502 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 NUP155O75694 1391 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 NEFLP07196 543 aa17.33■□□□□ 0.36
LINC00959-201ENST00000456581 PREX2Q70Z35 1606 aa17.33■□□□□ 0.36
LINC00959-201ENST00000456581 SYCP2Q9BX26 1530 aa17.32■□□□□ 0.36
LINC00959-201ENST00000456581 HSPA5P11021 654 aaKnown RBP17.32■□□□□ 0.36
LINC00959-201ENST00000456581 RPRD2Q5VT52 1461 aaKnown RBP17.32■□□□□ 0.36
LINC00959-201ENST00000456581 ZCCHC11Q5TAX3 1644 aaKnown RBP17.31■□□□□ 0.36
LINC00959-201ENST00000456581 MSH5O43196 834 aa17.31■□□□□ 0.36
LINC00959-201ENST00000456581 CCER2I3L3R5 266 aa17.3■□□□□ 0.36
LINC00959-201ENST00000456581 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
LINC00959-201ENST00000456581 HNRNPUQ00839 825 aaKnown RBP eCLIP17.29■□□□□ 0.36
LINC00959-201ENST00000456581 ZNF326Q5BKZ1 582 aaKnown RBP17.29■□□□□ 0.36
LINC00959-201ENST00000456581 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
LINC00959-201ENST00000456581 SHANK2Q9UPX8 1470 aa17.29■□□□□ 0.36
LINC00959-201ENST00000456581 TEX14Q8IWB6 1497 aa17.28■□□□□ 0.36
LINC00959-201ENST00000456581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.36
LINC00959-201ENST00000456581 KIAA1107Q9UPP5 1409 aa17.28■□□□□ 0.36
LINC00959-201ENST00000456581 UHRF1BP1LA0JNW5 1464 aa17.27■□□□□ 0.36
LINC00959-201ENST00000456581 ARHGEF12Q9NZN5 1544 aa17.27■□□□□ 0.36
LINC00959-201ENST00000456581 ARHGEF5Q12774 1597 aa17.27■□□□□ 0.35
LINC00959-201ENST00000456581 SENP3-EIF4A1A0A087X0R7 540 aa17.25■□□□□ 0.35
LINC00959-201ENST00000456581 WASHC2AQ641Q2 1341 aa17.25■□□□□ 0.35
LINC00959-201ENST00000456581 C11orf95C9JLR9 678 aaPredicted RBP17.25■□□□□ 0.35
LINC00959-201ENST00000456581 MYO5CQ9NQX4 1742 aa17.24■□□□□ 0.35
LINC00959-201ENST00000456581 EIF4G2P78344 907 aaKnown RBP eCLIP17.24■□□□□ 0.35
LINC00959-201ENST00000456581 CNGB1Q14028 1251 aaPredicted RBP17.24■□□□□ 0.35
LINC00959-201ENST00000456581 PLCH2O75038 1416 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 EFCAB2Q5VUJ9 269 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 AFAP1Q8N556 730 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 BCL11AQ9H165 835 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 RSPH4AQ5TD94 716 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 TRAPPC8Q9Y2L5 1435 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 KDM2AQ9Y2K7 1162 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 PLEKHH2Q8IVE3 1493 aa17.19■□□□□ 0.34
LINC00959-201ENST00000456581 FAM135AQ9P2D6 1515 aa17.15■□□□□ 0.34
LINC00959-201ENST00000456581 FAM9BQ8IZU0 186 aa17.15■□□□□ 0.34
LINC00959-201ENST00000456581 RGL3Q3MIN7 710 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms