RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 TRIM52Q96A61 297 aa17.71■□□□□ 0.42
LINC00959-201ENST00000456581 TROQ12816 1431 aaPredicted RBP17.7■□□□□ 0.42
LINC00959-201ENST00000456581 KIF14Q15058 1648 aa17.7■□□□□ 0.42
LINC00959-201ENST00000456581 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
LINC00959-201ENST00000456581 UACAQ9BZF9 1416 aa17.69■□□□□ 0.42
LINC00959-201ENST00000456581 CFDP1Q9UEE9 299 aaPredicted RBP17.69■□□□□ 0.42
LINC00959-201ENST00000456581 SHROOM2Q13796 1616 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 FOXD1Q16676 465 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 ATP10BO94823 1461 aa17.67■□□□□ 0.42
LINC00959-201ENST00000456581 PTPRGP23470 1445 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 ABCC5O15440 1437 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 PLEKHD1A6NEE1 506 aa17.66■□□□□ 0.42
LINC00959-201ENST00000456581 DAPK1P53355 1430 aa17.65■□□□□ 0.42
LINC00959-201ENST00000456581 ABCA8O94911 1581 aa17.65■□□□□ 0.42
LINC00959-201ENST00000456581 ERCC6L2Q5T890 1561 aa17.64■□□□□ 0.41
LINC00959-201ENST00000456581 GPATCH8Q9UKJ3 1502 aaKnown RBP17.64■□□□□ 0.41
LINC00959-201ENST00000456581 FKBP8Q14318 412 aa17.63■□□□□ 0.41
LINC00959-201ENST00000456581 PPP1R15AO75807 674 aaPredicted RBP17.62■□□□□ 0.41
LINC00959-201ENST00000456581 DENND4BO75064 1496 aaPredicted RBP17.61■□□□□ 0.41
LINC00959-201ENST00000456581 CAMSAP2Q08AD1 1489 aa17.6■□□□□ 0.41
LINC00959-201ENST00000456581 GCC2Q8IWJ2 1684 aa17.59■□□□□ 0.41
LINC00959-201ENST00000456581 TONSLQ96HA7 1378 aa17.59■□□□□ 0.41
LINC00959-201ENST00000456581 MPHOSPH9Q99550 1183 aa17.58■□□□□ 0.41
LINC00959-201ENST00000456581 DNMT1P26358 1616 aaKnown RBP17.57■□□□□ 0.4
LINC00959-201ENST00000456581 AKNAQ7Z591 1439 aa17.55■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3CA6NJZ7 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3BA6NNM3 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 RIMBP3Q9UFD9 1639 aa17.54■□□□□ 0.4
LINC00959-201ENST00000456581 ADCY10Q96PN6 1610 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 ABCC10Q5T3U5 1492 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 HNRNPMP52272 730 aaKnown RBP eCLIP17.53■□□□□ 0.4
LINC00959-201ENST00000456581 TIMELESSQ9UNS1 1208 aa17.53■□□□□ 0.4
LINC00959-201ENST00000456581 CDC42BPAQ5VT25 1732 aa17.52■□□□□ 0.4
LINC00959-201ENST00000456581 ROCK1Q13464 1354 aa17.52■□□□□ 0.39
LINC00959-201ENST00000456581 ITSN2Q9NZM3 1697 aa17.51■□□□□ 0.39
LINC00959-201ENST00000456581 NCOA1Q15788 1441 aa17.5■□□□□ 0.39
LINC00959-201ENST00000456581 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
LINC00959-201ENST00000456581 KDM5BQ9UGL1 1544 aa17.47■□□□□ 0.39
LINC00959-201ENST00000456581 IRX6P78412 446 aaPredicted RBP17.46■□□□□ 0.39
LINC00959-201ENST00000456581 ANP32EQ9BTT0 268 aa17.46■□□□□ 0.39
LINC00959-201ENST00000456581 L3MBTL2Q969R5 705 aa17.44■□□□□ 0.38
LINC00959-201ENST00000456581 ANP32CO43423 234 aa17.43■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD30AQ9BXX3 1397 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 C9orf84Q5VXU9 1444 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 TSPY4P0CV99 314 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 TSPY10P0CW01 314 aa17.41■□□□□ 0.38
LINC00959-201ENST00000456581 CROCC2H7BZ55 1655 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 PZPP20742 1482 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 ABCC2Q92887 1545 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 CDC42BPBQ9Y5S2 1711 aa17.4■□□□□ 0.38
LINC00959-201ENST00000456581 TTC37Q6PGP7 1564 aa17.39■□□□□ 0.38
LINC00959-201ENST00000456581 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.37
LINC00959-201ENST00000456581 RBM19Q9Y4C8 960 aaKnown RBP17.39■□□□□ 0.37
LINC00959-201ENST00000456581 ADGBQ8N7X0 1667 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 ADGRL2O95490 1459 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 PKD2Q13563 968 aa17.38■□□□□ 0.37
LINC00959-201ENST00000456581 MBD5Q9P267 1494 aa17.37■□□□□ 0.37
LINC00959-201ENST00000456581 SAMD9LQ8IVG5 1584 aa17.37■□□□□ 0.37
LINC00959-201ENST00000456581 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.37■□□□□ 0.37
LINC00959-201ENST00000456581 NBPF8Q3BBV2 869 aa17.35■□□□□ 0.37
LINC00959-201ENST00000456581 KIF15Q9NS87 1388 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 ARHGAP5Q13017 1502 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 NUP155O75694 1391 aa17.34■□□□□ 0.37
LINC00959-201ENST00000456581 NEFLP07196 543 aa17.33■□□□□ 0.36
LINC00959-201ENST00000456581 PREX2Q70Z35 1606 aa17.33■□□□□ 0.36
LINC00959-201ENST00000456581 SYCP2Q9BX26 1530 aa17.32■□□□□ 0.36
LINC00959-201ENST00000456581 HSPA5P11021 654 aaKnown RBP17.32■□□□□ 0.36
LINC00959-201ENST00000456581 RPRD2Q5VT52 1461 aaKnown RBP17.32■□□□□ 0.36
LINC00959-201ENST00000456581 ZCCHC11Q5TAX3 1644 aaKnown RBP17.31■□□□□ 0.36
LINC00959-201ENST00000456581 MSH5O43196 834 aa17.31■□□□□ 0.36
LINC00959-201ENST00000456581 CCER2I3L3R5 266 aa17.3■□□□□ 0.36
LINC00959-201ENST00000456581 CCDC184Q52MB2 194 aa17.3■□□□□ 0.36
LINC00959-201ENST00000456581 HNRNPUQ00839 825 aaKnown RBP eCLIP17.29■□□□□ 0.36
LINC00959-201ENST00000456581 ZNF326Q5BKZ1 582 aaKnown RBP17.29■□□□□ 0.36
LINC00959-201ENST00000456581 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
LINC00959-201ENST00000456581 SHANK2Q9UPX8 1470 aa17.29■□□□□ 0.36
LINC00959-201ENST00000456581 TEX14Q8IWB6 1497 aa17.28■□□□□ 0.36
LINC00959-201ENST00000456581 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.36
LINC00959-201ENST00000456581 KIAA1107Q9UPP5 1409 aa17.28■□□□□ 0.36
LINC00959-201ENST00000456581 UHRF1BP1LA0JNW5 1464 aa17.27■□□□□ 0.36
LINC00959-201ENST00000456581 ARHGEF12Q9NZN5 1544 aa17.27■□□□□ 0.36
LINC00959-201ENST00000456581 ARHGEF5Q12774 1597 aa17.27■□□□□ 0.35
LINC00959-201ENST00000456581 SENP3-EIF4A1A0A087X0R7 540 aa17.25■□□□□ 0.35
LINC00959-201ENST00000456581 WASHC2AQ641Q2 1341 aa17.25■□□□□ 0.35
LINC00959-201ENST00000456581 C11orf95C9JLR9 678 aaPredicted RBP17.25■□□□□ 0.35
LINC00959-201ENST00000456581 MYO5CQ9NQX4 1742 aa17.24■□□□□ 0.35
LINC00959-201ENST00000456581 EIF4G2P78344 907 aaKnown RBP eCLIP17.24■□□□□ 0.35
LINC00959-201ENST00000456581 CNGB1Q14028 1251 aaPredicted RBP17.24■□□□□ 0.35
LINC00959-201ENST00000456581 PLCH2O75038 1416 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 EFCAB2Q5VUJ9 269 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 AFAP1Q8N556 730 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 BCL11AQ9H165 835 aa17.21■□□□□ 0.35
LINC00959-201ENST00000456581 RSPH4AQ5TD94 716 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 TRAPPC8Q9Y2L5 1435 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 KDM2AQ9Y2K7 1162 aa17.2■□□□□ 0.34
LINC00959-201ENST00000456581 PLEKHH2Q8IVE3 1493 aa17.19■□□□□ 0.34
LINC00959-201ENST00000456581 FAM135AQ9P2D6 1515 aa17.15■□□□□ 0.34
LINC00959-201ENST00000456581 FAM9BQ8IZU0 186 aa17.15■□□□□ 0.34
LINC00959-201ENST00000456581 RGL3Q3MIN7 710 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms