RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 TSPY4P0CV99 314 aa19.52■□□□□ 0.71
CLK3-203ENST00000454830 TSPY10P0CW01 314 aa19.52■□□□□ 0.71
CLK3-203ENST00000454830 ABCC5O15440 1437 aa19.5■□□□□ 0.71
CLK3-203ENST00000454830 HNRNPMP52272 730 aaKnown RBP eCLIP19.5■□□□□ 0.714e-10■■■■■ 38
CLK3-203ENST00000454830 PPP1R15AO75807 674 aaPredicted RBP19.49■□□□□ 0.71
CLK3-203ENST00000454830 KIF14Q15058 1648 aa19.49■□□□□ 0.71
CLK3-203ENST00000454830 GPATCH8Q9UKJ3 1502 aaKnown RBP19.48■□□□□ 0.71
CLK3-203ENST00000454830 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
CLK3-203ENST00000454830 CAMSAP2Q08AD1 1489 aa19.47■□□□□ 0.71
CLK3-203ENST00000454830 ABCA8O94911 1581 aa19.45■□□□□ 0.7
CLK3-203ENST00000454830 DDX10Q13206 875 aaKnown RBP19.44■□□□□ 0.7
CLK3-203ENST00000454830 ERCC6L2Q5T890 1561 aa19.42■□□□□ 0.7
CLK3-203ENST00000454830 ANKRD30AQ9BXX3 1397 aa19.41■□□□□ 0.7
CLK3-203ENST00000454830 KDM6BO15054 1643 aa19.4■□□□□ 0.7
CLK3-203ENST00000454830 ROCK1Q13464 1354 aa19.38■□□□□ 0.69
CLK3-203ENST00000454830 ACIN1Q9UKV3 1341 aaKnown RBP19.38■□□□□ 0.69
CLK3-203ENST00000454830 AKNAQ7Z591 1439 aa19.38■□□□□ 0.69
CLK3-203ENST00000454830 ZNF326Q5BKZ1 582 aaKnown RBP19.37■□□□□ 0.69
CLK3-203ENST00000454830 ITSN2Q9NZM3 1697 aa19.37■□□□□ 0.69
CLK3-203ENST00000454830 DNMT1P26358 1616 aaKnown RBP19.37■□□□□ 0.69
CLK3-203ENST00000454830 MYT1LQ9UL68 1186 aa19.36■□□□□ 0.69
CLK3-203ENST00000454830 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.34■□□□□ 0.693e-9■■■■■ 27.4
CLK3-203ENST00000454830 NCOA1Q15788 1441 aa19.34■□□□□ 0.69
CLK3-203ENST00000454830 PKD2Q13563 968 aa19.34■□□□□ 0.69
CLK3-203ENST00000454830 L3MBTL2Q969R5 705 aa19.34■□□□□ 0.69
CLK3-203ENST00000454830 GCC2Q8IWJ2 1684 aa19.33■□□□□ 0.69
CLK3-203ENST00000454830 C9orf84Q5VXU9 1444 aa19.31■□□□□ 0.68
CLK3-203ENST00000454830 NUP155O75694 1391 aa19.31■□□□□ 0.68
CLK3-203ENST00000454830 ABCC10Q5T3U5 1492 aa19.31■□□□□ 0.68
CLK3-203ENST00000454830 ANKRD50Q9ULJ7 1429 aa19.3■□□□□ 0.68
CLK3-203ENST00000454830 ARHGAP5Q13017 1502 aa19.29■□□□□ 0.68
CLK3-203ENST00000454830 SCAF1Q9H7N4 1312 aaKnown RBP19.29■□□□□ 0.68
CLK3-203ENST00000454830 ADCY10Q96PN6 1610 aa19.28■□□□□ 0.68
CLK3-203ENST00000454830 KIF15Q9NS87 1388 aa19.28■□□□□ 0.68
CLK3-203ENST00000454830 OSCARQ8IYS5 282 aa19.28■□□□□ 0.68
CLK3-203ENST00000454830 ABCC2Q92887 1545 aa19.27■□□□□ 0.68
CLK3-203ENST00000454830 CDC42BPAQ5VT25 1732 aa19.26■□□□□ 0.67
CLK3-203ENST00000454830 EFCAB2Q5VUJ9 269 aa19.25■□□□□ 0.67
CLK3-203ENST00000454830 NPM1P06748 294 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLK3-203ENST00000454830 SHROOM2Q13796 1616 aa19.25■□□□□ 0.67
CLK3-203ENST00000454830 DENND4BO75064 1496 aaPredicted RBP19.23■□□□□ 0.67
CLK3-203ENST00000454830 GTF3C3Q9Y5Q9 886 aa19.22■□□□□ 0.67
CLK3-203ENST00000454830 RSPH4AQ5TD94 716 aa19.22■□□□□ 0.67
CLK3-203ENST00000454830 ANKRD30BQ9BXX2 1392 aa19.22■□□□□ 0.67
CLK3-203ENST00000454830 EIF4G2P78344 907 aaKnown RBP eCLIP19.22■□□□□ 0.67
CLK3-203ENST00000454830 POLR3GLQ9BT43 218 aa19.22■□□□□ 0.67
CLK3-203ENST00000454830 HSPA5P11021 654 aaKnown RBP19.21■□□□□ 0.67
CLK3-203ENST00000454830 KDM2AQ9Y2K7 1162 aa19.21■□□□□ 0.67
CLK3-203ENST00000454830 CLASP1Q7Z460 1538 aa19.2■□□□□ 0.66
CLK3-203ENST00000454830 CCDC141Q6ZP82 1450 aa19.19■□□□□ 0.66
CLK3-203ENST00000454830 ANP32CO43423 234 aa19.19■□□□□ 0.66
CLK3-203ENST00000454830 ADGRL2O95490 1459 aa19.17■□□□□ 0.66
CLK3-203ENST00000454830 TTC37Q6PGP7 1564 aa19.17■□□□□ 0.66
CLK3-203ENST00000454830 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.17■□□□□ 0.663e-12■□□□□ 9.1
CLK3-203ENST00000454830 SYCP2Q9BX26 1530 aa19.17■□□□□ 0.66
CLK3-203ENST00000454830 ADGBQ8N7X0 1667 aa19.15■□□□□ 0.66
CLK3-203ENST00000454830 NBPF8Q3BBV2 869 aa19.15■□□□□ 0.66
CLK3-203ENST00000454830 PZPP20742 1482 aa19.15■□□□□ 0.66
CLK3-203ENST00000454830 CNGB1Q14028 1251 aaPredicted RBP19.15■□□□□ 0.66
CLK3-203ENST00000454830 KIAA1107Q9UPP5 1409 aa19.14■□□□□ 0.66
CLK3-203ENST00000454830 AFAP1Q8N556 730 aa19.14■□□□□ 0.65
CLK3-203ENST00000454830 SAMD9LQ8IVG5 1584 aa19.14■□□□□ 0.65
CLK3-203ENST00000454830 MBD5Q9P267 1494 aa19.14■□□□□ 0.65
CLK3-203ENST00000454830 RGL3Q3MIN7 710 aa19.13■□□□□ 0.65
CLK3-203ENST00000454830 RPRD2Q5VT52 1461 aaKnown RBP19.12■□□□□ 0.65
CLK3-203ENST00000454830 ZCCHC11Q5TAX3 1644 aaKnown RBP19.11■□□□□ 0.65
CLK3-203ENST00000454830 SHANK2Q9UPX8 1470 aa19.11■□□□□ 0.65
CLK3-203ENST00000454830 CDC42BPBQ9Y5S2 1711 aa19.11■□□□□ 0.65
CLK3-203ENST00000454830 PREX2Q70Z35 1606 aa19.11■□□□□ 0.65
CLK3-203ENST00000454830 SPAG9O60271 1321 aaKnown RBP19.11■□□□□ 0.65
CLK3-203ENST00000454830 CROCC2H7BZ55 1655 aa19.1■□□□□ 0.65
CLK3-203ENST00000454830 PLCH2O75038 1416 aa19.09■□□□□ 0.65
CLK3-203ENST00000454830 DCAF11Q8TEB1 546 aa19.09■□□□□ 0.65
CLK3-203ENST00000454830 KDM5BQ9UGL1 1544 aa19.09■□□□□ 0.65
CLK3-203ENST00000454830 PLEKHH2Q8IVE3 1493 aa19.07■□□□□ 0.64
CLK3-203ENST00000454830 UHRF1BP1LA0JNW5 1464 aa19.07■□□□□ 0.64
CLK3-203ENST00000454830 MYO5CQ9NQX4 1742 aa19.06■□□□□ 0.64
CLK3-203ENST00000454830 ARHGEF5Q12774 1597 aa19.05■□□□□ 0.64
CLK3-203ENST00000454830 TRAPPC8Q9Y2L5 1435 aa19.03■□□□□ 0.64
CLK3-203ENST00000454830 WASHC2AQ641Q2 1341 aa19.02■□□□□ 0.64
CLK3-203ENST00000454830 WDR7Q9Y4E6 1490 aa19.02■□□□□ 0.64
CLK3-203ENST00000454830 CARD11Q9BXL7 1154 aa19.01■□□□□ 0.63
CLK3-203ENST00000454830 ARHGEF12Q9NZN5 1544 aa19■□□□□ 0.63
CLK3-203ENST00000454830 ASXL2Q76L83 1435 aa19■□□□□ 0.63
CLK3-203ENST00000454830 CYB5RLQ6IPT4 315 aa19■□□□□ 0.63
CLK3-203ENST00000454830 TEX14Q8IWB6 1497 aa18.99■□□□□ 0.63
CLK3-203ENST00000454830 KIF3BO15066 747 aa18.98■□□□□ 0.63
CLK3-203ENST00000454830 CCDC144AA2RUR9 1427 aa18.98■□□□□ 0.63
CLK3-203ENST00000454830 C11orf95C9JLR9 678 aaPredicted RBP18.97■□□□□ 0.63
CLK3-203ENST00000454830 FANCAO15360 1455 aa18.97■□□□□ 0.63
CLK3-203ENST00000454830 SCAPERQ9BY12 1400 aa18.96■□□□□ 0.63
CLK3-203ENST00000454830 FAM135AQ9P2D6 1515 aa18.95■□□□□ 0.62
CLK3-203ENST00000454830 USP47Q96K76 1375 aa18.93■□□□□ 0.62
CLK3-203ENST00000454830 ADGRL1O94910 1474 aa18.92■□□□□ 0.62
CLK3-203ENST00000454830 CCDC7Q96M83 1385 aa18.9■□□□□ 0.62
CLK3-203ENST00000454830 ABCC1P33527 1531 aa18.9■□□□□ 0.62
CLK3-203ENST00000454830 DUOX2Q9NRD8 1548 aa18.9■□□□□ 0.62
CLK3-203ENST00000454830 KIF7Q2M1P5 1343 aa18.89■□□□□ 0.61
CLK3-203ENST00000454830 CCER2I3L3R5 266 aa18.89■□□□□ 0.61
CLK3-203ENST00000454830 ROCK2O75116 1388 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms