RNA–Protein interactions for RNA: ENST00000449954.1

LINC01961-201, Transcript of long intergenic non-protein coding RNA 1961, humanhuman

TSL 5 BASIC

Gene LINC01961, Length 745 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01961-201ENST00000449954 RIMS1Q86UR5 1692 aaKnown RBP14.26□□□□□ -0.13
LINC01961-201ENST00000449954 UGGT2Q9NYU1 1516 aa14.25□□□□□ -0.13
LINC01961-201ENST00000449954 KIAA0556O60303 1618 aa14.25□□□□□ -0.13
LINC01961-201ENST00000449954 CARMIL1Q5VZK9 1371 aa14.23□□□□□ -0.13
LINC01961-201ENST00000449954 ARID4BQ4LE39 1312 aaPredicted RBP14.22□□□□□ -0.13
LINC01961-201ENST00000449954 KCNH8Q96L42 1107 aa14.2□□□□□ -0.14
LINC01961-201ENST00000449954 ARHGEF40Q8TER5 1519 aa14.19□□□□□ -0.14
LINC01961-201ENST00000449954 NEO1Q92859 1461 aa14.18□□□□□ -0.14
LINC01961-201ENST00000449954 ZBTB12Q9Y330 459 aaPredicted RBP14.17□□□□□ -0.14
LINC01961-201ENST00000449954 FRMPD1Q5SYB0 1578 aa14.17□□□□□ -0.14
LINC01961-201ENST00000449954 ABCA8O94911 1581 aa14.16□□□□□ -0.14
LINC01961-201ENST00000449954 POGZQ7Z3K3 1410 aa14.15□□□□□ -0.14
LINC01961-201ENST00000449954 ABCA9Q8IUA7 1624 aa14.15□□□□□ -0.14
LINC01961-201ENST00000449954 YEATS2Q9ULM3 1422 aa14.15□□□□□ -0.14
LINC01961-201ENST00000449954 RAPGEF3O95398 923 aa14.14□□□□□ -0.15
LINC01961-201ENST00000449954 FANCAO15360 1455 aa14.13□□□□□ -0.15
LINC01961-201ENST00000449954 IQSEC2Q5JU85 1478 aa14.13□□□□□ -0.15
LINC01961-201ENST00000449954 PREX1Q8TCU6 1659 aa14.13□□□□□ -0.15
LINC01961-201ENST00000449954 TTC37Q6PGP7 1564 aa14.13□□□□□ -0.15
LINC01961-201ENST00000449954 GOLGA3Q08378 1498 aa14.09□□□□□ -0.15
LINC01961-201ENST00000449954 RBM42Q9BTD8 480 aaKnown RBP14.08□□□□□ -0.16
LINC01961-201ENST00000449954 FER1L4A9Z1Z3 1794 aa14.08□□□□□ -0.16
LINC01961-201ENST00000449954 STRCQ7RTU9 1775 aa14.08□□□□□ -0.16
LINC01961-201ENST00000449954 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
LINC01961-201ENST00000449954 RAPGEF2Q9Y4G8 1499 aa14.06□□□□□ -0.16
LINC01961-201ENST00000449954 RICTORQ6R327 1708 aa14.05□□□□□ -0.16
LINC01961-201ENST00000449954 PTPRTO14522 1441 aa14.05□□□□□ -0.16
LINC01961-201ENST00000449954 DENND4BO75064 1496 aaPredicted RBP14.04□□□□□ -0.16
LINC01961-201ENST00000449954 EFCAB5A4FU69 1503 aa14.04□□□□□ -0.16
LINC01961-201ENST00000449954 ZMYM4Q5VZL5 1548 aa14.04□□□□□ -0.16
LINC01961-201ENST00000449954 FHOD3Q2V2M9 1422 aa14.03□□□□□ -0.16
LINC01961-201ENST00000449954 LTBP4Q8N2S1 1624 aa14.03□□□□□ -0.16
LINC01961-201ENST00000449954 ZFYVE16Q7Z3T8 1539 aa14.01□□□□□ -0.17
LINC01961-201ENST00000449954 UHRF1BP1Q6BDS2 1440 aa14.01□□□□□ -0.17
LINC01961-201ENST00000449954 CTTNBP2Q8WZ74 1663 aa14.01□□□□□ -0.17
LINC01961-201ENST00000449954 CFAP74Q9C0B2 1584 aa14□□□□□ -0.17
LINC01961-201ENST00000449954 MAGI2Q86UL8 1455 aa14□□□□□ -0.17
LINC01961-201ENST00000449954 SIGLEC1Q9BZZ2 1709 aa14□□□□□ -0.17
LINC01961-201ENST00000449954 ARHGEF12Q9NZN5 1544 aa14□□□□□ -0.17
LINC01961-201ENST00000449954 ATP10BO94823 1461 aa13.99□□□□□ -0.17
LINC01961-201ENST00000449954 SUPT5HO00267 1087 aaKnown RBP13.97□□□□□ -0.17
LINC01961-201ENST00000449954 FAM9AQ8IZU1 332 aaPredicted RBP13.97□□□□□ -0.17
LINC01961-201ENST00000449954 MED1Q15648 1581 aaPredicted RBP13.95□□□□□ -0.18
LINC01961-201ENST00000449954 SETD1BQ9UPS6 1966 aaKnown RBP13.93□□□□□ -0.18
LINC01961-201ENST00000449954 MLECQ14165 292 aa13.93□□□□□ -0.18
LINC01961-201ENST00000449954 ARID3CA6NKF2 412 aa13.9□□□□□ -0.18
LINC01961-201ENST00000449954 UBAP1LF5GYI3 381 aa13.89□□□□□ -0.19
LINC01961-201ENST00000449954 HECW1Q76N89 1606 aa13.89□□□□□ -0.19
LINC01961-201ENST00000449954 C9orf84Q5VXU9 1444 aa13.89□□□□□ -0.19
LINC01961-201ENST00000449954 MKRN4PQ13434 485 aaPredicted RBP13.88□□□□□ -0.19
LINC01961-201ENST00000449954 NCOA1Q15788 1441 aa13.88□□□□□ -0.19
LINC01961-201ENST00000449954 ATP10AO60312 1499 aa13.87□□□□□ -0.19
LINC01961-201ENST00000449954 CEBPAP49715 358 aaPredicted RBP13.87□□□□□ -0.19
LINC01961-201ENST00000449954 RAPGEF6Q8TEU7 1601 aa13.86□□□□□ -0.19
LINC01961-201ENST00000449954 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
LINC01961-201ENST00000449954 C3P01024 1663 aa13.82□□□□□ -0.2
LINC01961-201ENST00000449954 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.8□□□□□ -0.2
LINC01961-201ENST00000449954 TRAPPC8Q9Y2L5 1435 aa13.8□□□□□ -0.2
LINC01961-201ENST00000449954 NUP153P49790 1475 aaKnown RBP13.79□□□□□ -0.2
LINC01961-201ENST00000449954 ZNF335Q9H4Z2 1342 aaPredicted RBP13.78□□□□□ -0.2
LINC01961-201ENST00000449954 SCAPERQ9BY12 1400 aa13.78□□□□□ -0.2
LINC01961-201ENST00000449954 CAMSAP1Q5T5Y3 1602 aa13.78□□□□□ -0.2
LINC01961-201ENST00000449954 HSPA1LP34931 641 aa13.77□□□□□ -0.21
LINC01961-201ENST00000449954 SAMD9Q5K651 1589 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 REREQ9P2R6 1566 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 PLEKHD1A6NEE1 506 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 SPDYE2BA6NHP3 402 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 SPDYE6P0CI01 402 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 SPDYE2Q495Y8 402 aa13.76□□□□□ -0.21
LINC01961-201ENST00000449954 AGLP35573 1532 aa13.74□□□□□ -0.21
LINC01961-201ENST00000449954 PLA2R1Q13018 1463 aa13.74□□□□□ -0.21
LINC01961-201ENST00000449954 ZNF518AQ6AHZ1 1483 aa13.74□□□□□ -0.21
LINC01961-201ENST00000449954 NPATQ14207 1427 aa13.73□□□□□ -0.21
LINC01961-201ENST00000449954 CNTLNQ9NXG0 1405 aa13.73□□□□□ -0.21
LINC01961-201ENST00000449954 P3H3Q8IVL6 736 aa13.72□□□□□ -0.21
LINC01961-201ENST00000449954 ESF1Q9H501 851 aaKnown RBP13.72□□□□□ -0.21
LINC01961-201ENST00000449954 PLCH2O75038 1416 aa13.72□□□□□ -0.21
LINC01961-201ENST00000449954 KDM5CP41229 1560 aa13.71□□□□□ -0.21
LINC01961-201ENST00000449954 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
LINC01961-201ENST00000449954 PRXQ9BXM0 1461 aa13.71□□□□□ -0.21
LINC01961-201ENST00000449954 DIP2CQ9Y2E4 1556 aa13.71□□□□□ -0.22
LINC01961-201ENST00000449954 TOM1O60784 492 aa13.7□□□□□ -0.22
LINC01961-201ENST00000449954 PKD2Q13563 968 aa13.7□□□□□ -0.22
LINC01961-201ENST00000449954 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
LINC01961-201ENST00000449954 PIP4K2BP78356 416 aa13.69□□□□□ -0.22
LINC01961-201ENST00000449954 ZNF142P52746 1687 aaPredicted RBP13.69□□□□□ -0.22
LINC01961-201ENST00000449954 TCOF1Q13428 1488 aaKnown RBP13.68□□□□□ -0.22
LINC01961-201ENST00000449954 CPS1P31327 1500 aa13.68□□□□□ -0.22
LINC01961-201ENST00000449954 MROH2AA6NES4 1674 aa13.67□□□□□ -0.22
LINC01961-201ENST00000449954 NCKAP5LQ9HCH0 1330 aa13.66□□□□□ -0.22
LINC01961-201ENST00000449954 POTEHQ6S545 545 aa13.65□□□□□ -0.22
LINC01961-201ENST00000449954 CHRDL2Q6WN34 429 aa13.65□□□□□ -0.22
LINC01961-201ENST00000449954 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
LINC01961-201ENST00000449954 MYO5CQ9NQX4 1742 aa13.64□□□□□ -0.23
LINC01961-201ENST00000449954 EFCAB2Q5VUJ9 269 aa13.64□□□□□ -0.23
LINC01961-201ENST00000449954 SUPT6HQ7KZ85 1726 aaKnown RBP13.64□□□□□ -0.23
LINC01961-201ENST00000449954 MYO3AQ8NEV4 1616 aa13.64□□□□□ -0.23
LINC01961-201ENST00000449954 PTPRKQ15262 1439 aa13.64□□□□□ -0.23
LINC01961-201ENST00000449954 CEP170BQ9Y4F5 1589 aaPredicted RBP13.62□□□□□ -0.23
LINC01961-201ENST00000449954 MLH3Q9UHC1 1453 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms