RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ARHGEF40Q8TER5 1519 aa21.7■■□□□ 1.07
HMGB3-204ENST00000448905 SIGLEC1Q9BZZ2 1709 aa21.7■■□□□ 1.06
HMGB3-204ENST00000448905 YEATS2Q9ULM3 1422 aa21.69■■□□□ 1.06
HMGB3-204ENST00000448905 LMTK3Q96Q04 1460 aa21.69■■□□□ 1.06
HMGB3-204ENST00000448905 PCF11O94913 1555 aaKnown RBP21.69■■□□□ 1.06
HMGB3-204ENST00000448905 CFAP74Q9C0B2 1584 aa21.69■■□□□ 1.06
HMGB3-204ENST00000448905 CLIP1P30622 1438 aa21.68■■□□□ 1.06
HMGB3-204ENST00000448905 ARHGAP35Q9NRY4 1499 aa21.67■■□□□ 1.06
HMGB3-204ENST00000448905 AFAP1Q8N556 730 aa21.66■■□□□ 1.06
HMGB3-204ENST00000448905 ZFYVE16Q7Z3T8 1539 aa21.65■■□□□ 1.06
HMGB3-204ENST00000448905 TROQ12816 1431 aaPredicted RBP21.63■■□□□ 1.05
HMGB3-204ENST00000448905 ATP10AO60312 1499 aa21.63■■□□□ 1.05
HMGB3-204ENST00000448905 HECW1Q76N89 1606 aa21.62■■□□□ 1.05
HMGB3-204ENST00000448905 ZMYM4Q5VZL5 1548 aa21.61■■□□□ 1.05
HMGB3-204ENST00000448905 ESF1Q9H501 851 aaKnown RBP21.59■■□□□ 1.05
HMGB3-204ENST00000448905 C9orf84Q5VXU9 1444 aa21.57■■□□□ 1.04
HMGB3-204ENST00000448905 ZNF518AQ6AHZ1 1483 aa21.57■■□□□ 1.04
HMGB3-204ENST00000448905 ARHGAP5Q13017 1502 aa21.55■■□□□ 1.04
HMGB3-204ENST00000448905 FER1L4A9Z1Z3 1794 aa21.54■■□□□ 1.04
HMGB3-204ENST00000448905 CEBPAP49715 358 aaPredicted RBP21.54■■□□□ 1.04
HMGB3-204ENST00000448905 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
HMGB3-204ENST00000448905 CASKIN1Q8WXD9 1431 aa21.52■■□□□ 1.04
HMGB3-204ENST00000448905 KIF14Q15058 1648 aa21.51■■□□□ 1.03
HMGB3-204ENST00000448905 ZNF777Q9ULD5 760 aaPredicted RBP21.5■■□□□ 1.03
HMGB3-204ENST00000448905 MYO5CQ9NQX4 1742 aa21.49■■□□□ 1.03
HMGB3-204ENST00000448905 CCDC18Q5T9S5 1454 aa21.48■■□□□ 1.03
HMGB3-204ENST00000448905 CERKQ8TCT0 537 aa21.47■■□□□ 1.03
HMGB3-204ENST00000448905 LRRIQ1Q96JM4 1722 aa21.46■■□□□ 1.03
HMGB3-204ENST00000448905 ARHGEF12Q9NZN5 1544 aa21.45■■□□□ 1.02
HMGB3-204ENST00000448905 MLH3Q9UHC1 1453 aa21.45■■□□□ 1.02
HMGB3-204ENST00000448905 CFDP1Q9UEE9 299 aaPredicted RBP21.42■■□□□ 1.02
HMGB3-204ENST00000448905 TRAPPC8Q9Y2L5 1435 aa21.41■■□□□ 1.02
HMGB3-204ENST00000448905 SPAG9O60271 1321 aaKnown RBP21.4■■□□□ 1.02
HMGB3-204ENST00000448905 HNRNPMP52272 730 aaKnown RBP eCLIP21.4■■□□□ 1.02
HMGB3-204ENST00000448905 UHRF1BP1Q6BDS2 1440 aa21.38■■□□□ 1.01
HMGB3-204ENST00000448905 CDC42BPBQ9Y5S2 1711 aa21.38■■□□□ 1.01
HMGB3-204ENST00000448905 KDM5CP41229 1560 aa21.38■■□□□ 1.01
HMGB3-204ENST00000448905 PREX1Q8TCU6 1659 aa21.37■■□□□ 1.01
HMGB3-204ENST00000448905 FYCO1Q9BQS8 1478 aa21.36■■□□□ 1.01
HMGB3-204ENST00000448905 DIP2CQ9Y2E4 1556 aa21.35■■□□□ 1.01
HMGB3-204ENST00000448905 CCNB3Q8WWL7 1395 aa21.35■■□□□ 1.01
HMGB3-204ENST00000448905 STRCQ7RTU9 1775 aa21.34■■□□□ 1.01
HMGB3-204ENST00000448905 MTUS2Q5JR59 1369 aa21.33■■□□□ 1
HMGB3-204ENST00000448905 ABCA6Q8N139 1617 aa21.33■■□□□ 1
HMGB3-204ENST00000448905 CNTLNQ9NXG0 1405 aa21.32■■□□□ 1
HMGB3-204ENST00000448905 AGLP35573 1532 aa21.31■■□□□ 1
HMGB3-204ENST00000448905 GPATCH8Q9UKJ3 1502 aaKnown RBP21.3■■□□□ 1
HMGB3-204ENST00000448905 REREQ9P2R6 1566 aa21.3■■□□□ 1
HMGB3-204ENST00000448905 KIAA1107Q9UPP5 1409 aa21.29■■□□□ 1
HMGB3-204ENST00000448905 ABCC1P33527 1531 aa21.29■■□□□ 1
HMGB3-204ENST00000448905 C3P01024 1663 aa21.28■■□□□ 1
HMGB3-204ENST00000448905 PLEKHH2Q8IVE3 1493 aa21.28■■□□□ 1
HMGB3-204ENST00000448905 PPP6R1Q9UPN7 881 aa21.28■■□□□ 1
HMGB3-204ENST00000448905 ZMYM3Q14202 1370 aa21.27■■□□□ 1
HMGB3-204ENST00000448905 SETD1BQ9UPS6 1966 aaKnown RBP21.27■■□□□ 1
HMGB3-204ENST00000448905 PREX2Q70Z35 1606 aa21.27■■□□□ 1
HMGB3-204ENST00000448905 GGT6Q6P531 493 aa21.27■■□□□ 1
HMGB3-204ENST00000448905 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
HMGB3-204ENST00000448905 CDC42BPAQ5VT25 1732 aa21.24■□□□□ 0.99
HMGB3-204ENST00000448905 KIDINS220Q9ULH0 1771 aa21.24■□□□□ 0.99
HMGB3-204ENST00000448905 PTPRTO14522 1441 aa21.22■□□□□ 0.99
HMGB3-204ENST00000448905 RSPH4AQ5TD94 716 aa21.21■□□□□ 0.99
HMGB3-204ENST00000448905 ZNF644Q9H582 1327 aaPredicted RBP21.2■□□□□ 0.98
HMGB3-204ENST00000448905 SAMD9LQ8IVG5 1584 aa21.19■□□□□ 0.98
HMGB3-204ENST00000448905 NPATQ14207 1427 aa21.19■□□□□ 0.98
HMGB3-204ENST00000448905 A2MP01023 1474 aa21.17■□□□□ 0.98
HMGB3-204ENST00000448905 SYCP2Q9BX26 1530 aa21.17■□□□□ 0.98
HMGB3-204ENST00000448905 ILDR2Q71H61 639 aa21.16■□□□□ 0.98
HMGB3-204ENST00000448905 SUPT6HQ7KZ85 1726 aaKnown RBP21.15■□□□□ 0.98
HMGB3-204ENST00000448905 PKD2Q13563 968 aa21.15■□□□□ 0.98
HMGB3-204ENST00000448905 DISP3Q9P2K9 1392 aa21.14■□□□□ 0.98
HMGB3-204ENST00000448905 NCKAP5LQ9HCH0 1330 aa21.13■□□□□ 0.97
HMGB3-204ENST00000448905 TSPY4P0CV99 314 aa21.13■□□□□ 0.97
HMGB3-204ENST00000448905 TSPY10P0CW01 314 aa21.13■□□□□ 0.97
HMGB3-204ENST00000448905 DHX29Q7Z478 1369 aaKnown RBP21.11■□□□□ 0.97
HMGB3-204ENST00000448905 ATP7AQ04656 1500 aa21.11■□□□□ 0.97
HMGB3-204ENST00000448905 KIF3BO15066 747 aa21.11■□□□□ 0.97
HMGB3-204ENST00000448905 RTEL1-TNFRSF6BF6WH68 1400 aa21.11■□□□□ 0.97
HMGB3-204ENST00000448905 NCOA1Q15788 1441 aa21.11■□□□□ 0.97
HMGB3-204ENST00000448905 CEP162Q5TB80 1403 aa21.1■□□□□ 0.97
HMGB3-204ENST00000448905 LTBP4Q8N2S1 1624 aa21.08■□□□□ 0.97
HMGB3-204ENST00000448905 CAMSAP1Q5T5Y3 1602 aa21.07■□□□□ 0.96
HMGB3-204ENST00000448905 WASHC2CQ9Y4E1 1318 aa21.07■□□□□ 0.96
HMGB3-204ENST00000448905 CLTCQ00610 1675 aaKnown RBP21.07■□□□□ 0.96
HMGB3-204ENST00000448905 MBD5Q9P267 1494 aa21.07■□□□□ 0.96
HMGB3-204ENST00000448905 PTPRKQ15262 1439 aa21.05■□□□□ 0.96
HMGB3-204ENST00000448905 MROH2AA6NES4 1674 aa21.04■□□□□ 0.96
HMGB3-204ENST00000448905 EHBP1L1Q8N3D4 1523 aa21.04■□□□□ 0.96
HMGB3-204ENST00000448905 ZNF335Q9H4Z2 1342 aaPredicted RBP21.03■□□□□ 0.96
HMGB3-204ENST00000448905 UBAP1LF5GYI3 381 aa21■□□□□ 0.95
HMGB3-204ENST00000448905 FBXO31Q5XUX0 539 aaPredicted RBP21■□□□□ 0.95
HMGB3-204ENST00000448905 THEMISQ8N1K5 641 aaPredicted RBP21■□□□□ 0.95
HMGB3-204ENST00000448905 INO80Q9ULG1 1556 aaPredicted RBP21■□□□□ 0.95
HMGB3-204ENST00000448905 PLXNC1O60486 1568 aa20.99■□□□□ 0.95
HMGB3-204ENST00000448905 LOC105371045A0A1W2PR82 267 aa20.99■□□□□ 0.95
HMGB3-204ENST00000448905 IQSEC2Q5JU85 1478 aa20.99■□□□□ 0.95
HMGB3-204ENST00000448905 PLA2R1Q13018 1463 aa20.98■□□□□ 0.95
HMGB3-204ENST00000448905 NCOA2Q15596 1464 aa20.98■□□□□ 0.95
HMGB3-204ENST00000448905 CCDC141Q6ZP82 1450 aa20.97■□□□□ 0.95
HMGB3-204ENST00000448905 ANKLE2Q86XL3 938 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms