RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 KIF27Q86VH2 1401 aa12.68□□□□□ -0.38
HDAC9-216ENST00000446646 ARAP3Q8WWN8 1544 aa12.66□□□□□ -0.38
HDAC9-216ENST00000446646 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
HDAC9-216ENST00000446646 BCORL1Q5H9F3 1711 aa12.64□□□□□ -0.39
HDAC9-216ENST00000446646 CFAP43Q8NDM7 1665 aa12.64□□□□□ -0.39
HDAC9-216ENST00000446646 ARID4BQ4LE39 1312 aaPredicted RBP12.63□□□□□ -0.39
HDAC9-216ENST00000446646 ARID3CA6NKF2 412 aa12.63□□□□□ -0.39
HDAC9-216ENST00000446646 UGGT2Q9NYU1 1516 aa12.62□□□□□ -0.39
HDAC9-216ENST00000446646 KIAA0556O60303 1618 aa12.62□□□□□ -0.39
HDAC9-216ENST00000446646 RIMS1Q86UR5 1692 aaKnown RBP12.61□□□□□ -0.39
HDAC9-216ENST00000446646 FRMPD1Q5SYB0 1578 aa12.59□□□□□ -0.39
HDAC9-216ENST00000446646 ABCA8O94911 1581 aa12.57□□□□□ -0.4
HDAC9-216ENST00000446646 SIGLEC1Q9BZZ2 1709 aa12.54□□□□□ -0.4
HDAC9-216ENST00000446646 MLECQ14165 292 aa12.5□□□□□ -0.41
HDAC9-216ENST00000446646 ATP10BO94823 1461 aa12.5□□□□□ -0.41
HDAC9-216ENST00000446646 ARHGEF40Q8TER5 1519 aa12.5□□□□□ -0.41
HDAC9-216ENST00000446646 CEBPAP49715 358 aaPredicted RBP12.49□□□□□ -0.41
HDAC9-216ENST00000446646 ABCA9Q8IUA7 1624 aa12.48□□□□□ -0.41
HDAC9-216ENST00000446646 RAPGEF2Q9Y4G8 1499 aa12.48□□□□□ -0.41
HDAC9-216ENST00000446646 YEATS2Q9ULM3 1422 aa12.48□□□□□ -0.41
HDAC9-216ENST00000446646 NEO1Q92859 1461 aa12.47□□□□□ -0.41
HDAC9-216ENST00000446646 PHLDB1Q86UU1 1377 aa12.47□□□□□ -0.41
HDAC9-216ENST00000446646 STRCQ7RTU9 1775 aa12.47□□□□□ -0.41
HDAC9-216ENST00000446646 MKRN4PQ13434 485 aaPredicted RBP12.45□□□□□ -0.42
HDAC9-216ENST00000446646 P3H3Q8IVL6 736 aa12.44□□□□□ -0.42
HDAC9-216ENST00000446646 AKT1S1Q96B36 256 aa12.43□□□□□ -0.42
HDAC9-216ENST00000446646 LTBP4Q8N2S1 1624 aa12.43□□□□□ -0.42
HDAC9-216ENST00000446646 DENND4BO75064 1496 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-216ENST00000446646 FHOD3Q2V2M9 1422 aa12.41□□□□□ -0.42
HDAC9-216ENST00000446646 TTC37Q6PGP7 1564 aa12.41□□□□□ -0.42
HDAC9-216ENST00000446646 RICTORQ6R327 1708 aa12.41□□□□□ -0.42
HDAC9-216ENST00000446646 FANCAO15360 1455 aa12.4□□□□□ -0.42
HDAC9-216ENST00000446646 AKNAQ7Z591 1439 aa12.4□□□□□ -0.42
HDAC9-216ENST00000446646 GOLGA3Q08378 1498 aa12.4□□□□□ -0.43
HDAC9-216ENST00000446646 POGZQ7Z3K3 1410 aa12.39□□□□□ -0.43
HDAC9-216ENST00000446646 FER1L4A9Z1Z3 1794 aa12.38□□□□□ -0.43
HDAC9-216ENST00000446646 ZFYVE16Q7Z3T8 1539 aa12.37□□□□□ -0.43
HDAC9-216ENST00000446646 SPDYE2BA6NHP3 402 aa12.37□□□□□ -0.43
HDAC9-216ENST00000446646 SPDYE6P0CI01 402 aa12.37□□□□□ -0.43
HDAC9-216ENST00000446646 SPDYE2Q495Y8 402 aa12.37□□□□□ -0.43
HDAC9-216ENST00000446646 ARHGEF12Q9NZN5 1544 aa12.37□□□□□ -0.43
HDAC9-216ENST00000446646 PREX1Q8TCU6 1659 aa12.36□□□□□ -0.43
HDAC9-216ENST00000446646 PTPRTO14522 1441 aa12.36□□□□□ -0.43
HDAC9-216ENST00000446646 ZMYM4Q5VZL5 1548 aa12.35□□□□□ -0.43
HDAC9-216ENST00000446646 HECW1Q76N89 1606 aa12.33□□□□□ -0.43
HDAC9-216ENST00000446646 CTTNBP2Q8WZ74 1663 aa12.33□□□□□ -0.44
HDAC9-216ENST00000446646 UHRF1BP1Q6BDS2 1440 aa12.33□□□□□ -0.44
HDAC9-216ENST00000446646 UBAP1LF5GYI3 381 aa12.32□□□□□ -0.44
HDAC9-216ENST00000446646 POTEHQ6S545 545 aa12.32□□□□□ -0.44
HDAC9-216ENST00000446646 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
HDAC9-216ENST00000446646 NUP153P49790 1475 aaKnown RBP12.31□□□□□ -0.44
HDAC9-216ENST00000446646 ZNF335Q9H4Z2 1342 aaPredicted RBP12.31□□□□□ -0.44
HDAC9-216ENST00000446646 EFCAB5A4FU69 1503 aa12.31□□□□□ -0.44
HDAC9-216ENST00000446646 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
HDAC9-216ENST00000446646 IQSEC2Q5JU85 1478 aa12.29□□□□□ -0.44
HDAC9-216ENST00000446646 HSPA1LP34931 641 aa12.29□□□□□ -0.44
HDAC9-216ENST00000446646 MED1Q15648 1581 aaPredicted RBP12.29□□□□□ -0.44
HDAC9-216ENST00000446646 SRCAPQ6ZRS2 3230 aa12.29□□□□□ -0.44
HDAC9-216ENST00000446646 NCOA1Q15788 1441 aa12.28□□□□□ -0.44
HDAC9-216ENST00000446646 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDAC9-216ENST00000446646 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
HDAC9-216ENST00000446646 ATP10AO60312 1499 aa12.27□□□□□ -0.44
HDAC9-216ENST00000446646 MAGI2Q86UL8 1455 aa12.27□□□□□ -0.44
HDAC9-216ENST00000446646 RAPGEF6Q8TEU7 1601 aa12.27□□□□□ -0.44
HDAC9-216ENST00000446646 SCAPERQ9BY12 1400 aa12.27□□□□□ -0.45
HDAC9-216ENST00000446646 C9orf84Q5VXU9 1444 aa12.26□□□□□ -0.45
HDAC9-216ENST00000446646 NCKAP5LQ9HCH0 1330 aa12.25□□□□□ -0.45
HDAC9-216ENST00000446646 PRXQ9BXM0 1461 aa12.25□□□□□ -0.45
HDAC9-216ENST00000446646 SETD1BQ9UPS6 1966 aaKnown RBP12.22□□□□□ -0.45
HDAC9-216ENST00000446646 PLEKHD1A6NEE1 506 aa12.22□□□□□ -0.45
HDAC9-216ENST00000446646 RANGAP1P46060 587 aaPredicted RBP12.21□□□□□ -0.45
HDAC9-216ENST00000446646 PIP4K2BP78356 416 aa12.21□□□□□ -0.45
HDAC9-216ENST00000446646 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
HDAC9-216ENST00000446646 C3P01024 1663 aa12.21□□□□□ -0.45
HDAC9-216ENST00000446646 SAMD9Q5K651 1589 aa12.21□□□□□ -0.46
HDAC9-216ENST00000446646 AFAP1Q8N556 730 aa12.2□□□□□ -0.46
HDAC9-216ENST00000446646 CFAP74Q9C0B2 1584 aa12.2□□□□□ -0.46
HDAC9-216ENST00000446646 TRAPPC8Q9Y2L5 1435 aa12.2□□□□□ -0.46
HDAC9-216ENST00000446646 CAMSAP1Q5T5Y3 1602 aa12.19□□□□□ -0.46
HDAC9-216ENST00000446646 PITPNM1O00562 1244 aa12.19□□□□□ -0.46
HDAC9-216ENST00000446646 PLCH2O75038 1416 aa12.18□□□□□ -0.46
HDAC9-216ENST00000446646 DIP2CQ9Y2E4 1556 aa12.15□□□□□ -0.46
HDAC9-216ENST00000446646 FAM9AQ8IZU1 332 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-216ENST00000446646 RGS17Q9UGC6 210 aaPredicted RBP12.15□□□□□ -0.46
HDAC9-216ENST00000446646 CDK13Q14004 1512 aaKnown RBP12.15□□□□□ -0.46
HDAC9-216ENST00000446646 ABCA6Q8N139 1617 aa12.11□□□□□ -0.47
HDAC9-216ENST00000446646 ALKQ9UM73 1620 aa12.11□□□□□ -0.47
HDAC9-216ENST00000446646 KDM5CP41229 1560 aa12.11□□□□□ -0.47
HDAC9-216ENST00000446646 EFCAB2Q5VUJ9 269 aa12.11□□□□□ -0.47
HDAC9-216ENST00000446646 SPDYE1Q8NFV5 336 aaPredicted RBP12.1□□□□□ -0.47
HDAC9-216ENST00000446646 MYT1LQ9UL68 1186 aa12.1□□□□□ -0.47
HDAC9-216ENST00000446646 CLEC11AQ9Y240 323 aa12.1□□□□□ -0.47
HDAC9-216ENST00000446646 TCOF1Q13428 1488 aaKnown RBP12.09□□□□□ -0.47
HDAC9-216ENST00000446646 ZNF518AQ6AHZ1 1483 aa12.09□□□□□ -0.47
HDAC9-216ENST00000446646 ZMYM3Q14202 1370 aa12.07□□□□□ -0.48
HDAC9-216ENST00000446646 ESF1Q9H501 851 aaKnown RBP12.07□□□□□ -0.48
HDAC9-216ENST00000446646 REREQ9P2R6 1566 aa12.07□□□□□ -0.48
HDAC9-216ENST00000446646 AGLP35573 1532 aa12.06□□□□□ -0.48
HDAC9-216ENST00000446646 NPATQ14207 1427 aa12.06□□□□□ -0.48
HDAC9-216ENST00000446646 PKD2Q13563 968 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms