RNA–Protein interactions for RNA: ENST00000444609.1

HDAC8-215, Transcript of histone deacetylase 8, humanhuman

TSL 3

Gene HDAC8, Length 607 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-215ENST00000444609 ZMYM4Q5VZL5 1548 aa18.19■□□□□ 0.5
HDAC8-215ENST00000444609 ZNF335Q9H4Z2 1342 aaPredicted RBP18.17■□□□□ 0.5
HDAC8-215ENST00000444609 NCOA1Q15788 1441 aa18.16■□□□□ 0.5
HDAC8-215ENST00000444609 FAM9AQ8IZU1 332 aaPredicted RBP18.16■□□□□ 0.5
HDAC8-215ENST00000444609 SETD1BQ9UPS6 1966 aaKnown RBP18.13■□□□□ 0.49
HDAC8-215ENST00000444609 ATP10AO60312 1499 aa18.12■□□□□ 0.49
HDAC8-215ENST00000444609 SCAF1Q9H7N4 1312 aaKnown RBP18.1■□□□□ 0.49
HDAC8-215ENST00000444609 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.1■□□□□ 0.49
HDAC8-215ENST00000444609 PIP4K2BP78356 416 aa18.1■□□□□ 0.49
HDAC8-215ENST00000444609 HNRNPUL2Q1KMD3 747 aaKnown RBP18.1■□□□□ 0.49
HDAC8-215ENST00000444609 HECW1Q76N89 1606 aa18.09■□□□□ 0.49
HDAC8-215ENST00000444609 C9orf84Q5VXU9 1444 aa18.08■□□□□ 0.49
HDAC8-215ENST00000444609 TRAPPC8Q9Y2L5 1435 aa18.07■□□□□ 0.48
HDAC8-215ENST00000444609 NCKAP5LQ9HCH0 1330 aa18.06■□□□□ 0.48
HDAC8-215ENST00000444609 TOM1O60784 492 aa18.05■□□□□ 0.48
HDAC8-215ENST00000444609 P3H3Q8IVL6 736 aa18.03■□□□□ 0.48
HDAC8-215ENST00000444609 SCAPERQ9BY12 1400 aa18.02■□□□□ 0.48
HDAC8-215ENST00000444609 CFAP74Q9C0B2 1584 aa18.02■□□□□ 0.48
HDAC8-215ENST00000444609 RGS17Q9UGC6 210 aaPredicted RBP18.02■□□□□ 0.48
HDAC8-215ENST00000444609 PLEKHD1A6NEE1 506 aa18.01■□□□□ 0.47
HDAC8-215ENST00000444609 CAMSAP1Q5T5Y3 1602 aa17.99■□□□□ 0.47
HDAC8-215ENST00000444609 PKD2Q13563 968 aa17.98■□□□□ 0.47
HDAC8-215ENST00000444609 ESF1Q9H501 851 aaKnown RBP17.96■□□□□ 0.47
HDAC8-215ENST00000444609 CTTNBP2Q8WZ74 1663 aa17.95■□□□□ 0.46
HDAC8-215ENST00000444609 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.94■□□□□ 0.46
HDAC8-215ENST00000444609 C3P01024 1663 aa17.94■□□□□ 0.46
HDAC8-215ENST00000444609 PPP6R1Q9UPN7 881 aa17.92■□□□□ 0.46
HDAC8-215ENST00000444609 NUP153P49790 1475 aaKnown RBP17.91■□□□□ 0.46
HDAC8-215ENST00000444609 RAPGEF6Q8TEU7 1601 aa17.9■□□□□ 0.46
HDAC8-215ENST00000444609 PLCH2O75038 1416 aa17.89■□□□□ 0.45
HDAC8-215ENST00000444609 PLA2R1Q13018 1463 aa17.88■□□□□ 0.45
HDAC8-215ENST00000444609 NPATQ14207 1427 aa17.88■□□□□ 0.45
HDAC8-215ENST00000444609 TCOF1Q13428 1488 aaKnown RBP17.88■□□□□ 0.45
HDAC8-215ENST00000444609 EFCAB2Q5VUJ9 269 aa17.85■□□□□ 0.45
HDAC8-215ENST00000444609 POTEAQ6S8J7 498 aa17.85■□□□□ 0.45
HDAC8-215ENST00000444609 AFAP1Q8N556 730 aa17.85■□□□□ 0.45
HDAC8-215ENST00000444609 CNTLNQ9NXG0 1405 aa17.85■□□□□ 0.45
HDAC8-215ENST00000444609 PTPRKQ15262 1439 aa17.84■□□□□ 0.45
HDAC8-215ENST00000444609 AGLP35573 1532 aa17.83■□□□□ 0.45
HDAC8-215ENST00000444609 MYT1LQ9UL68 1186 aa17.83■□□□□ 0.44
HDAC8-215ENST00000444609 CPS1P31327 1500 aa17.82■□□□□ 0.44
HDAC8-215ENST00000444609 REREQ9P2R6 1566 aa17.82■□□□□ 0.44
HDAC8-215ENST00000444609 SENP3Q9H4L4 574 aaPredicted RBP17.81■□□□□ 0.44
HDAC8-215ENST00000444609 ZNF518AQ6AHZ1 1483 aa17.81■□□□□ 0.44
HDAC8-215ENST00000444609 ZMYM3Q14202 1370 aa17.8■□□□□ 0.44
HDAC8-215ENST00000444609 ALKQ9UM73 1620 aa17.8■□□□□ 0.44
HDAC8-215ENST00000444609 SHANK2Q9UPX8 1470 aa17.79■□□□□ 0.44
HDAC8-215ENST00000444609 DIP2CQ9Y2E4 1556 aa17.78■□□□□ 0.44
HDAC8-215ENST00000444609 PRXQ9BXM0 1461 aa17.76■□□□□ 0.43
HDAC8-215ENST00000444609 KDM5CP41229 1560 aa17.75■□□□□ 0.43
HDAC8-215ENST00000444609 SAMD9Q5K651 1589 aa17.74■□□□□ 0.43
HDAC8-215ENST00000444609 MLH3Q9UHC1 1453 aa17.73■□□□□ 0.43
HDAC8-215ENST00000444609 CEP170BQ9Y4F5 1589 aaPredicted RBP17.7■□□□□ 0.42
HDAC8-215ENST00000444609 UPF1Q92900 1129 aaKnown RBP eCLIP17.69■□□□□ 0.42
HDAC8-215ENST00000444609 ZNF142P52746 1687 aaPredicted RBP17.68■□□□□ 0.42
HDAC8-215ENST00000444609 ABCA6Q8N139 1617 aa17.68■□□□□ 0.42
HDAC8-215ENST00000444609 MYO3AQ8NEV4 1616 aa17.65■□□□□ 0.42
HDAC8-215ENST00000444609 MROH2AA6NES4 1674 aa17.65■□□□□ 0.42
HDAC8-215ENST00000444609 VWDEQ8N2E2 1590 aa17.62■□□□□ 0.41
HDAC8-215ENST00000444609 SRCAPQ6ZRS2 3230 aa17.62■□□□□ 0.41
HDAC8-215ENST00000444609 A2ML1A8K2U0 1454 aa17.61■□□□□ 0.41
HDAC8-215ENST00000444609 NEURL4Q96JN8 1562 aa17.6■□□□□ 0.41
HDAC8-215ENST00000444609 CDK13Q14004 1512 aaKnown RBP17.59■□□□□ 0.41
HDAC8-215ENST00000444609 SETD1AO15047 1707 aaKnown RBP17.58■□□□□ 0.41
HDAC8-215ENST00000444609 SUPT6HQ7KZ85 1726 aaKnown RBP17.58■□□□□ 0.41
HDAC8-215ENST00000444609 ARHGAP5Q13017 1502 aa17.58■□□□□ 0.41
HDAC8-215ENST00000444609 RANGAP1P46060 587 aaPredicted RBP17.58■□□□□ 0.4
HDAC8-215ENST00000444609 ANKLE2Q86XL3 938 aa17.58■□□□□ 0.4
HDAC8-215ENST00000444609 LRRC7Q96NW7 1537 aa17.57■□□□□ 0.4
HDAC8-215ENST00000444609 DNMT1P26358 1616 aaKnown RBP17.57■□□□□ 0.4
HDAC8-215ENST00000444609 MYO5CQ9NQX4 1742 aa17.56■□□□□ 0.4
HDAC8-215ENST00000444609 CDK11AQ9UQ88 783 aaPredicted RBP17.52■□□□□ 0.4
HDAC8-215ENST00000444609 NPHP4O75161 1426 aaPredicted RBP17.51■□□□□ 0.39
HDAC8-215ENST00000444609 RNF17Q9BXT8 1623 aaKnown RBP17.5■□□□□ 0.39
HDAC8-215ENST00000444609 MED14O60244 1454 aa17.5■□□□□ 0.39
HDAC8-215ENST00000444609 FAM135BQ49AJ0 1406 aa17.5■□□□□ 0.39
HDAC8-215ENST00000444609 GGT6Q6P531 493 aa17.5■□□□□ 0.39
HDAC8-215ENST00000444609 CLTCQ00610 1675 aaKnown RBP17.5■□□□□ 0.39
HDAC8-215ENST00000444609 KIDINS220Q9ULH0 1771 aa17.5■□□□□ 0.39
HDAC8-215ENST00000444609 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.5■□□□□ 0.39
HDAC8-215ENST00000444609 THEMISQ8N1K5 641 aaPredicted RBP17.49■□□□□ 0.39
HDAC8-215ENST00000444609 POLR1AO95602 1720 aaPredicted RBP17.48■□□□□ 0.39
HDAC8-215ENST00000444609 KIF14Q15058 1648 aa17.47■□□□□ 0.39
HDAC8-215ENST00000444609 ABCC1P33527 1531 aa17.46■□□□□ 0.39
HDAC8-215ENST00000444609 TRIM52Q96A61 297 aa17.45■□□□□ 0.38
HDAC8-215ENST00000444609 TNRQ92752 1358 aa17.44■□□□□ 0.38
HDAC8-215ENST00000444609 FBXO31Q5XUX0 539 aaPredicted RBP17.44■□□□□ 0.38
HDAC8-215ENST00000444609 TROQ12816 1431 aaPredicted RBP17.44■□□□□ 0.38
HDAC8-215ENST00000444609 ATP1B4Q9UN42 357 aaPredicted RBP17.43■□□□□ 0.38
HDAC8-215ENST00000444609 SPAG9O60271 1321 aaKnown RBP17.43■□□□□ 0.38
HDAC8-215ENST00000444609 STRCP1A6NGW2 1772 aa17.41■□□□□ 0.38
HDAC8-215ENST00000444609 SYNMO15061 1565 aa17.4■□□□□ 0.38
HDAC8-215ENST00000444609 DEPDC5O75140 1603 aa17.39■□□□□ 0.38
HDAC8-215ENST00000444609 ZNF772Q68DY9 489 aaPredicted RBP17.39■□□□□ 0.37
HDAC8-215ENST00000444609 CSRNP3Q8WYN3 585 aa17.39■□□□□ 0.37
HDAC8-215ENST00000444609 SAMD9LQ8IVG5 1584 aa17.39■□□□□ 0.37
HDAC8-215ENST00000444609 CLIP1P30622 1438 aa17.38■□□□□ 0.37
HDAC8-215ENST00000444609 A2MP01023 1474 aa17.38■□□□□ 0.37
HDAC8-215ENST00000444609 ITSN2Q9NZM3 1697 aa17.38■□□□□ 0.37
HDAC8-215ENST00000444609 CDC42BPBQ9Y5S2 1711 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms