RNA–Protein interactions for RNA: ENST00000441728.6

UBE2F-215, Transcript of ubiquitin conjugating enzyme E2 F (putative), human

TSL 2

Gene UBE2F, Length 1,242 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2F-215	ENST00000441728	FBXO41	Q8TF61	875 aa		32.89	■■■□□ 2.86
UBE2F-215	ENST00000441728	MLEC	Q14165	292 aa		32.88	■■■□□ 2.85
UBE2F-215	ENST00000441728	YEATS2	Q9ULM3	1422 aa		32.87	■■■□□ 2.85
UBE2F-215	ENST00000441728	EFCAB2	Q5VUJ9	269 aa		32.87	■■■□□ 2.85
UBE2F-215	ENST00000441728	LMTK3	Q96Q04	1460 aa		32.85	■■■□□ 2.85
UBE2F-215	ENST00000441728	MYO5C	Q9NQX4	1742 aa		32.84	■■■□□ 2.85
UBE2F-215	ENST00000441728	ARHGAP35	Q9NRY4	1499 aa		32.81	■■■□□ 2.84
UBE2F-215	ENST00000441728	CLIP1	P30622	1438 aa		32.81	■■■□□ 2.84
UBE2F-215	ENST00000441728	MYT1L	Q9UL68	1186 aa		32.8	■■■□□ 2.84
UBE2F-215	ENST00000441728	KIF14	Q15058	1648 aa		32.8	■■■□□ 2.84
UBE2F-215	ENST00000441728	FER1L4	A9Z1Z3	1794 aa		32.75	■■■□□ 2.83
UBE2F-215	ENST00000441728	HSPA2	P54652	639 aa		32.75	■■■□□ 2.83
UBE2F-215	ENST00000441728	ARHGAP5	Q13017	1502 aa		32.74	■■■□□ 2.83
UBE2F-215	ENST00000441728	ATP10A	O60312	1499 aa		32.74	■■■□□ 2.83
UBE2F-215	ENST00000441728	TRO	Q12816	1431 aa	Predicted RBP	32.73	■■■□□ 2.83
UBE2F-215	ENST00000441728	C9orf84	Q5VXU9	1444 aa		32.73	■■■□□ 2.83
UBE2F-215	ENST00000441728	CHIC1	Q5VXU3	224 aa		32.72	■■■□□ 2.83
UBE2F-215	ENST00000441728	SIGLEC1	Q9BZZ2	1709 aa		32.71	■■■□□ 2.83
UBE2F-215	ENST00000441728	ZNF518A	Q6AHZ1	1483 aa		32.7	■■■□□ 2.83
UBE2F-215	ENST00000441728	ARHGEF12	Q9NZN5	1544 aa		32.61	■■■□□ 2.81
UBE2F-215	ENST00000441728	AFAP1	Q8N556	730 aa		32.6	■■■□□ 2.81
UBE2F-215	ENST00000441728	CCDC18	Q5T9S5	1454 aa		32.57	■■■□□ 2.8
UBE2F-215	ENST00000441728	ESF1	Q9H501	851 aa	Known RBP	32.55	■■■□□ 2.8
UBE2F-215	ENST00000441728	LRRIQ1	Q96JM4	1722 aa		32.54	■■■□□ 2.8
UBE2F-215	ENST00000441728	KDM5C	P41229	1560 aa		32.54	■■■□□ 2.8
UBE2F-215	ENST00000441728	CEBPA	P49715	358 aa	Predicted RBP	32.53	■■■□□ 2.8
UBE2F-215	ENST00000441728	PREX1	Q8TCU6	1659 aa		32.53	■■■□□ 2.8
UBE2F-215	ENST00000441728	CASKIN1	Q8WXD9	1431 aa		32.51	■■■□□ 2.8
UBE2F-215	ENST00000441728	CDC42BPB	Q9Y5S2	1711 aa		32.5	■■■□□ 2.79
UBE2F-215	ENST00000441728	PREX2	Q70Z35	1606 aa		32.48	■■■□□ 2.79
UBE2F-215	ENST00000441728	DIP2C	Q9Y2E4	1556 aa		32.48	■■■□□ 2.79
UBE2F-215	ENST00000441728	UHRF1BP1	Q6BDS2	1440 aa		32.45	■■■□□ 2.79
UBE2F-215	ENST00000441728	CERK	Q8TCT0	537 aa		32.45	■■■□□ 2.79
UBE2F-215	ENST00000441728	MLH3	Q9UHC1	1453 aa		32.45	■■■□□ 2.79
UBE2F-215	ENST00000441728	ABCC1	P33527	1531 aa		32.43	■■■□□ 2.78
UBE2F-215	ENST00000441728	DMRT2	Q9Y5R5	561 aa		32.43	■■■□□ 2.78
UBE2F-215	ENST00000441728	RERE	Q9P2R6	1566 aa		32.43	■■■□□ 2.78
UBE2F-215	ENST00000441728	ABCA6	Q8N139	1617 aa		32.42	■■■□□ 2.78
UBE2F-215	ENST00000441728	TRAPPC8	Q9Y2L5	1435 aa		32.41	■■■□□ 2.78
UBE2F-215	ENST00000441728	ITSN2	Q9NZM3	1697 aa		32.4	■■■□□ 2.78
UBE2F-215	ENST00000441728	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.4	■■■□□ 2.78
UBE2F-215	ENST00000441728	FYCO1	Q9BQS8	1478 aa		32.4	■■■□□ 2.78
UBE2F-215	ENST00000441728	SETD1B	Q9UPS6	1966 aa	Known RBP	32.34	■■■□□ 2.77
UBE2F-215	ENST00000441728	AGL	P35573	1532 aa		32.34	■■■□□ 2.77
UBE2F-215	ENST00000441728	CDC42BPA	Q5VT25	1732 aa		32.34	■■■□□ 2.77
UBE2F-215	ENST00000441728	C3	P01024	1663 aa		32.3	■■■□□ 2.76
UBE2F-215	ENST00000441728	CNTLN	Q9NXG0	1405 aa		32.28	■■■□□ 2.76
UBE2F-215	ENST00000441728	KIDINS220	Q9ULH0	1771 aa		32.28	■■■□□ 2.76
UBE2F-215	ENST00000441728	SPAG9	O60271	1321 aa	Known RBP	32.26	■■■□□ 2.76
UBE2F-215	ENST00000441728	SYCP2	Q9BX26	1530 aa		32.24	■■■□□ 2.75
UBE2F-215	ENST00000441728	SAMD9L	Q8IVG5	1584 aa		32.23	■■■□□ 2.75
UBE2F-215	ENST00000441728	STRC	Q7RTU9	1775 aa		32.22	■■■□□ 2.75
UBE2F-215	ENST00000441728	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.22	■■■□□ 2.75	2e-6	■■■□□ 16.1
UBE2F-215	ENST00000441728	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.22	■■■□□ 2.75
UBE2F-215	ENST00000441728	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.21	■■■□□ 2.75
UBE2F-215	ENST00000441728	CCNB3	Q8WWL7	1395 aa		32.2	■■■□□ 2.75
UBE2F-215	ENST00000441728	MTUS2	Q5JR59	1369 aa		32.19	■■■□□ 2.74
UBE2F-215	ENST00000441728	PLEKHH2	Q8IVE3	1493 aa		32.19	■■■□□ 2.74
UBE2F-215	ENST00000441728	PTPRT	O14522	1441 aa		32.15	■■■□□ 2.74
UBE2F-215	ENST00000441728	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.14	■■■□□ 2.74
UBE2F-215	ENST00000441728	ATP7A	Q04656	1500 aa		32.13	■■■□□ 2.73
UBE2F-215	ENST00000441728	KIAA1107	Q9UPP5	1409 aa		32.12	■■■□□ 2.73
UBE2F-215	ENST00000441728	MROH2A	A6NES4	1674 aa		32.11	■■■□□ 2.73
UBE2F-215	ENST00000441728	NPAT	Q14207	1427 aa		32.09	■■■□□ 2.73
UBE2F-215	ENST00000441728	ZMYM3	Q14202	1370 aa		32.08	■■■□□ 2.73
UBE2F-215	ENST00000441728	A2M	P01023	1474 aa		32.08	■■■□□ 2.73
UBE2F-215	ENST00000441728	GGT6	Q6P531	493 aa		32.06	■■■□□ 2.72
UBE2F-215	ENST00000441728	NCOA1	Q15788	1441 aa		32.05	■■■□□ 2.72
UBE2F-215	ENST00000441728	INO80	Q9ULG1	1556 aa	Predicted RBP	32.04	■■■□□ 2.72
UBE2F-215	ENST00000441728	CLTC	Q00610	1675 aa	Known RBP	32.02	■■■□□ 2.72
UBE2F-215	ENST00000441728	CAMSAP1	Q5T5Y3	1602 aa		32.01	■■■□□ 2.72
UBE2F-215	ENST00000441728	EHBP1L1	Q8N3D4	1523 aa		32	■■■□□ 2.71
UBE2F-215	ENST00000441728	PLXNC1	O60486	1568 aa		31.98	■■■□□ 2.71
UBE2F-215	ENST00000441728	ADGB	Q8N7X0	1667 aa		31.96	■■■□□ 2.71
UBE2F-215	ENST00000441728	DISP3	Q9P2K9	1392 aa		31.95	■■■□□ 2.71
UBE2F-215	ENST00000441728	TIAM1	Q13009	1591 aa		31.94	■■■□□ 2.7
UBE2F-215	ENST00000441728	PPP6R1	Q9UPN7	881 aa		31.94	■■■□□ 2.7
UBE2F-215	ENST00000441728	ZNF644	Q9H582	1327 aa	Predicted RBP	31.93	■■■□□ 2.7
UBE2F-215	ENST00000441728	NCKAP5L	Q9HCH0	1330 aa		31.92	■■■□□ 2.7
UBE2F-215	ENST00000441728	MYO3A	Q8NEV4	1616 aa		31.91	■■■□□ 2.7
UBE2F-215	ENST00000441728	IQSEC2	Q5JU85	1478 aa		31.9	■■■□□ 2.7
UBE2F-215	ENST00000441728	LTBP4	Q8N2S1	1624 aa		31.89	■■■□□ 2.7
UBE2F-215	ENST00000441728	PKD2	Q13563	968 aa		31.89	■■■□□ 2.7
UBE2F-215	ENST00000441728	CEP162	Q5TB80	1403 aa		31.89	■■■□□ 2.7
UBE2F-215	ENST00000441728	PTPRK	Q15262	1439 aa		31.88	■■■□□ 2.69
UBE2F-215	ENST00000441728	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.87	■■■□□ 2.69
UBE2F-215	ENST00000441728	ZNF142	P52746	1687 aa	Predicted RBP	31.86	■■■□□ 2.69
UBE2F-215	ENST00000441728	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.86	■■■□□ 2.69
UBE2F-215	ENST00000441728	PLA2R1	Q13018	1463 aa		31.84	■■■□□ 2.69
UBE2F-215	ENST00000441728	MBD5	Q9P267	1494 aa		31.84	■■■□□ 2.69
UBE2F-215	ENST00000441728	DHX29	Q7Z478	1369 aa	Known RBP	31.81	■■■□□ 2.68
UBE2F-215	ENST00000441728	CCDC141	Q6ZP82	1450 aa		31.8	■■■□□ 2.68
UBE2F-215	ENST00000441728	KIF3B	O15066	747 aa		31.8	■■■□□ 2.68
UBE2F-215	ENST00000441728	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.79	■■■□□ 2.68
UBE2F-215	ENST00000441728	RSPH4A	Q5TD94	716 aa		31.79	■■■□□ 2.68
UBE2F-215	ENST00000441728	NCOA2	Q15596	1464 aa		31.77	■■■□□ 2.68
UBE2F-215	ENST00000441728	CAMSAP2	Q08AD1	1489 aa		31.76	■■■□□ 2.67
UBE2F-215	ENST00000441728	UBAP1L	F5GYI3	381 aa		31.75	■■■□□ 2.67
UBE2F-215	ENST00000441728	A2ML1	A8K2U0	1454 aa		31.74	■■■□□ 2.67
UBE2F-215	ENST00000441728	SPATA31D1	Q6ZQQ2	1576 aa		31.73	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms