RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 STK26Q9P289 416 aa16.22■□□□□ 0.19
TCOF1-205ENST00000439160 HMGXB3Q12766 1538 aa16.22■□□□□ 0.19
TCOF1-205ENST00000439160 ROCK2O75116 1388 aaKnown RBP16.21■□□□□ 0.19
TCOF1-205ENST00000439160 CUX1P39880 1505 aa16.21■□□□□ 0.19
TCOF1-205ENST00000439160 CCER2I3L3R5 266 aa16.2■□□□□ 0.18
TCOF1-205ENST00000439160 SRPK2P78362 688 aaKnown RBP16.2■□□□□ 0.18
TCOF1-205ENST00000439160 UPF2Q9HAU5 1272 aaKnown RBP16.19■□□□□ 0.18
TCOF1-205ENST00000439160 PRXQ9BXM0 1461 aa16.18■□□□□ 0.18
TCOF1-205ENST00000439160 U2SURPO15042 1029 aaKnown RBP16.17■□□□□ 0.18
TCOF1-205ENST00000439160 TOPBP1Q92547 1522 aa16.16■□□□□ 0.18
TCOF1-205ENST00000439160 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
TCOF1-205ENST00000439160 TOP2BQ02880 1626 aa16.16■□□□□ 0.18
TCOF1-205ENST00000439160 POLA1P09884 1462 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-205ENST00000439160 FGD6Q6ZV73 1430 aa16.15■□□□□ 0.18
TCOF1-205ENST00000439160 LRRC9Q6ZRR7 1453 aa16.15■□□□□ 0.18
TCOF1-205ENST00000439160 NUDCQ9Y266 331 aa16.15■□□□□ 0.18
TCOF1-205ENST00000439160 NUTM2DQ5VT03 806 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-205ENST00000439160 LMOD2Q6P5Q4 547 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 OSCARQ8IYS5 282 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 GRIN2BQ13224 1484 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 MAPK8IP3Q9UPT6 1336 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 WASHC2CQ9Y4E1 1318 aa16.14■□□□□ 0.17
TCOF1-205ENST00000439160 HSP90AA1P07900 732 aaKnown RBP16.14■□□□□ 0.17
TCOF1-205ENST00000439160 LAS1LQ9Y4W2 734 aaKnown RBP16.13■□□□□ 0.17
TCOF1-205ENST00000439160 MYOM3Q5VTT5 1437 aa16.12■□□□□ 0.17
TCOF1-205ENST00000439160 SOX12O15370 315 aa16.12■□□□□ 0.17
TCOF1-205ENST00000439160 A0A0G2JS52 829 aa16.11■□□□□ 0.17
TCOF1-205ENST00000439160 MORC1Q86VD1 984 aa16.11■□□□□ 0.17
TCOF1-205ENST00000439160 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
TCOF1-205ENST00000439160 NBR1Q14596 966 aa16.1■□□□□ 0.17
TCOF1-205ENST00000439160 FRAT1Q92837 279 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-205ENST00000439160 ST20-MTHFSA0A0A6YYL1 179 aa16.09■□□□□ 0.17
TCOF1-205ENST00000439160 HDGFP51858 240 aaKnown RBP16.09■□□□□ 0.17
TCOF1-205ENST00000439160 KTN1Q86UP2 1357 aaKnown RBP16.08■□□□□ 0.17
TCOF1-205ENST00000439160 B4GALNT3Q6L9W6 998 aa16.08■□□□□ 0.17
TCOF1-205ENST00000439160 ANP32EQ9BTT0 268 aa16.07■□□□□ 0.16
TCOF1-205ENST00000439160 MYH16Q9H6N6 1097 aa16.07■□□□□ 0.16
TCOF1-205ENST00000439160 PPP4R2Q9NY27 417 aa16.07■□□□□ 0.16
TCOF1-205ENST00000439160 MRC2Q9UBG0 1479 aa16.07■□□□□ 0.16
TCOF1-205ENST00000439160 NCOA2Q15596 1464 aa16.06■□□□□ 0.16
TCOF1-205ENST00000439160 CCDC144AA2RUR9 1427 aa16.06■□□□□ 0.16
TCOF1-205ENST00000439160 FTSJ3Q8IY81 847 aaKnown RBP16.05■□□□□ 0.16
TCOF1-205ENST00000439160 HAP1P54257 671 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-205ENST00000439160 TRAK1Q9UPV9 953 aa16.02■□□□□ 0.16
TCOF1-205ENST00000439160 PRDM2Q13029 1718 aa16.02■□□□□ 0.16
TCOF1-205ENST00000439160 RALBP1Q15311 655 aa16.02■□□□□ 0.15
TCOF1-205ENST00000439160 KIF15Q9NS87 1388 aa16■□□□□ 0.15
TCOF1-205ENST00000439160 IFT140Q96RY7 1462 aa16■□□□□ 0.15
TCOF1-205ENST00000439160 FYCO1Q9BQS8 1478 aa16■□□□□ 0.15
TCOF1-205ENST00000439160 RGS3P49796 1198 aa15.99■□□□□ 0.15
TCOF1-205ENST00000439160 HDGFL2Q7Z4V5 671 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-205ENST00000439160 PRG4Q92954 1404 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-205ENST00000439160 DNMBPQ6XZF7 1577 aa15.99■□□□□ 0.15
TCOF1-205ENST00000439160 UACAQ9BZF9 1416 aa15.98■□□□□ 0.15
TCOF1-205ENST00000439160 RRBP1Q9P2E9 1410 aaKnown RBP15.98■□□□□ 0.15
TCOF1-205ENST00000439160 AFAP1Q8N556 730 aa15.97■□□□□ 0.15
TCOF1-205ENST00000439160 U2AF1L5P0DN76 240 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-205ENST00000439160 U2AF1Q01081 240 aaKnown RBP eCLIP15.97■□□□□ 0.15
TCOF1-205ENST00000439160 EIF3AQ14152 1382 aaKnown RBP15.96■□□□□ 0.15
TCOF1-205ENST00000439160 SNAPC4Q5SXM2 1469 aa15.96■□□□□ 0.14
TCOF1-205ENST00000439160 ANKRD50Q9ULJ7 1429 aa15.96■□□□□ 0.14
TCOF1-205ENST00000439160 USP47Q96K76 1375 aa15.96■□□□□ 0.14
TCOF1-205ENST00000439160 NLRP13Q86W25 1043 aa15.95■□□□□ 0.14
TCOF1-205ENST00000439160 PANK3Q9H999 370 aa15.94■□□□□ 0.14
TCOF1-205ENST00000439160 PRKRIP1Q9H875 184 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-205ENST00000439160 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
TCOF1-205ENST00000439160 PNNQ9H307 717 aaKnown RBP15.93■□□□□ 0.14
TCOF1-205ENST00000439160 EFCAB5A4FU69 1503 aa15.92■□□□□ 0.14
TCOF1-205ENST00000439160 NUTM2FA1L443 756 aa15.92■□□□□ 0.14
TCOF1-205ENST00000439160 PEG3Q9GZU2 1588 aa15.92■□□□□ 0.14
TCOF1-205ENST00000439160 UNC13AQ9UPW8 1703 aa15.92■□□□□ 0.14
TCOF1-205ENST00000439160 ARXQ96QS3 562 aa15.91■□□□□ 0.14
TCOF1-205ENST00000439160 FAM69CQ0P6D2 419 aa15.91■□□□□ 0.14
TCOF1-205ENST00000439160 RCAN3Q9UKA8 241 aa15.9■□□□□ 0.14
TCOF1-205ENST00000439160 PAK3O75914 559 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-205ENST00000439160 CCDC146Q8IYE0 955 aa15.9■□□□□ 0.14
TCOF1-205ENST00000439160 SYNJ2O15056 1496 aa15.89■□□□□ 0.13
TCOF1-205ENST00000439160 TERF2IPQ9NYB0 399 aa15.88■□□□□ 0.13
TCOF1-205ENST00000439160 VGFO15240 615 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-205ENST00000439160 TSHZ2Q9NRE2 1034 aa15.87■□□□□ 0.13
TCOF1-205ENST00000439160 TIAM1Q13009 1591 aa15.87■□□□□ 0.13
TCOF1-205ENST00000439160 RBM19Q9Y4C8 960 aaKnown RBP15.86■□□□□ 0.13
TCOF1-205ENST00000439160 LAMC3Q9Y6N6 1575 aa15.86■□□□□ 0.13
TCOF1-205ENST00000439160 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.86■□□□□ 0.13
TCOF1-205ENST00000439160 EID1Q9Y6B2 187 aa15.86■□□□□ 0.13
TCOF1-205ENST00000439160 EIF5BO60841 1220 aaKnown RBP15.84■□□□□ 0.13
TCOF1-205ENST00000439160 TROQ12816 1431 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-205ENST00000439160 MYBBP1AQ9BQG0 1328 aaKnown RBP15.84■□□□□ 0.13
TCOF1-205ENST00000439160 ARHGAP5Q13017 1502 aa15.83■□□□□ 0.13
TCOF1-205ENST00000439160 MS4A1P11836 297 aa15.83■□□□□ 0.13
TCOF1-205ENST00000439160 KIF7Q2M1P5 1343 aa15.83■□□□□ 0.12
TCOF1-205ENST00000439160 KIAA0586Q9BVV6 1533 aa15.83■□□□□ 0.12
TCOF1-205ENST00000439160 DDRGK1Q96HY6 314 aa15.82■□□□□ 0.12
TCOF1-205ENST00000439160 MINK1Q8N4C8 1332 aaPredicted RBP15.82■□□□□ 0.12
TCOF1-205ENST00000439160 BECN1Q14457 450 aa15.82■□□□□ 0.12
TCOF1-205ENST00000439160 CDK13Q14004 1512 aaKnown RBP15.81■□□□□ 0.12
TCOF1-205ENST00000439160 URB2Q14146 1524 aaKnown RBP15.81■□□□□ 0.12
TCOF1-205ENST00000439160 GOLGA2Q08379 1002 aa15.81■□□□□ 0.12
TCOF1-205ENST00000439160 RTF1Q92541 710 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms