RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 GOLGA2Q08379 1002 aa14.45□□□□□ -0.1
PTCH1-209ENST00000437951 IPO8O15397 1037 aaKnown RBP14.45□□□□□ -0.1
PTCH1-209ENST00000437951 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.44□□□□□ -0.1
PTCH1-209ENST00000437951 TIMELESSQ9UNS1 1208 aa14.44□□□□□ -0.1
PTCH1-209ENST00000437951 CWC15Q9P013 229 aaKnown RBP14.43□□□□□ -0.1
PTCH1-209ENST00000437951 RWDD1Q9H446 243 aaPredicted RBP14.43□□□□□ -0.1
PTCH1-209ENST00000437951 PMFBP1Q8TBY8 1022 aa14.43□□□□□ -0.1
PTCH1-209ENST00000437951 GZF1Q9H116 711 aaPredicted RBP14.42□□□□□ -0.1
PTCH1-209ENST00000437951 RRP12Q5JTH9 1297 aaKnown RBP14.42□□□□□ -0.1
PTCH1-209ENST00000437951 CHMP4CQ96CF2 233 aa14.42□□□□□ -0.1
PTCH1-209ENST00000437951 CLIP1P30622 1438 aa14.42□□□□□ -0.1
PTCH1-209ENST00000437951 KIF16BQ96L93 1317 aa14.42□□□□□ -0.1
PTCH1-209ENST00000437951 GSE1Q14687 1217 aa14.41□□□□□ -0.1
PTCH1-209ENST00000437951 KIF3AQ9Y496 699 aa14.4□□□□□ -0.1
PTCH1-209ENST00000437951 CCDC66A2RUB6 948 aa14.4□□□□□ -0.1
PTCH1-209ENST00000437951 CLSTN1O94985 981 aa14.4□□□□□ -0.1
PTCH1-209ENST00000437951 ACBD3Q9H3P7 528 aa14.4□□□□□ -0.1
PTCH1-209ENST00000437951 CEP89Q96ST8 783 aa14.39□□□□□ -0.11
PTCH1-209ENST00000437951 HMMRO75330 724 aa14.38□□□□□ -0.11
PTCH1-209ENST00000437951 CDR1P51861 262 aa14.38□□□□□ -0.11
PTCH1-209ENST00000437951 CHMP4AQ9BY43 222 aa14.38□□□□□ -0.11
PTCH1-209ENST00000437951 TSR1Q2NL82 804 aaKnown RBP14.38□□□□□ -0.11
PTCH1-209ENST00000437951 CHIC2Q9UKJ5 165 aa14.38□□□□□ -0.11
PTCH1-209ENST00000437951 ATP6V1DQ9Y5K8 247 aa14.38□□□□□ -0.11
PTCH1-209ENST00000437951 GOLGA3Q08378 1498 aa14.37□□□□□ -0.11
PTCH1-209ENST00000437951 SPRYD3Q8NCJ5 442 aa14.37□□□□□ -0.11
PTCH1-209ENST00000437951 TPM1P09493 284 aa14.37□□□□□ -0.11
PTCH1-209ENST00000437951 CARD11Q9BXL7 1154 aa14.36□□□□□ -0.11
PTCH1-209ENST00000437951 ARGLU1Q9NWB6 273 aaPredicted RBP14.36□□□□□ -0.11
PTCH1-209ENST00000437951 ST18O60284 1047 aa14.36□□□□□ -0.11
PTCH1-209ENST00000437951 GPATCH3Q96I76 525 aa14.35□□□□□ -0.11
PTCH1-209ENST00000437951 AK7Q96M32 723 aa14.35□□□□□ -0.11
PTCH1-209ENST00000437951 SLKQ9H2G2 1235 aaPredicted RBP14.34□□□□□ -0.11
PTCH1-209ENST00000437951 HDAC5Q9UQL6 1122 aa14.33□□□□□ -0.12
PTCH1-209ENST00000437951 GOLGA6L19H0YKK7 550 aa14.33□□□□□ -0.12
PTCH1-209ENST00000437951 TPM2P07951 284 aa14.33□□□□□ -0.12
PTCH1-209ENST00000437951 HIRIP3Q9BW71 556 aaPredicted RBP14.32□□□□□ -0.12
PTCH1-209ENST00000437951 TSHZ2Q9NRE2 1034 aa14.32□□□□□ -0.12
PTCH1-209ENST00000437951 PKNOX2Q96KN3 472 aa14.32□□□□□ -0.12
PTCH1-209ENST00000437951 RDXP35241 583 aaKnown RBP14.32□□□□□ -0.12
PTCH1-209ENST00000437951 DCTN1Q14203 1278 aa14.31□□□□□ -0.12
PTCH1-209ENST00000437951 CCDC191Q8NCU4 936 aa14.31□□□□□ -0.12
PTCH1-209ENST00000437951 HSP90B1P14625 803 aaKnown RBP14.31□□□□□ -0.12
PTCH1-209ENST00000437951 TAF3Q5VWG9 929 aa14.31□□□□□ -0.12
PTCH1-209ENST00000437951 PHLDB1Q86UU1 1377 aa14.3□□□□□ -0.12
PTCH1-209ENST00000437951 FANCIQ9NVI1 1328 aa14.3□□□□□ -0.12
PTCH1-209ENST00000437951 RCAN3Q9UKA8 241 aa14.3□□□□□ -0.12
PTCH1-209ENST00000437951 KTN1Q86UP2 1357 aaKnown RBP14.29□□□□□ -0.12
PTCH1-209ENST00000437951 TMF1P82094 1093 aa14.28□□□□□ -0.12
PTCH1-209ENST00000437951 PRM3Q9NNZ6 103 aa14.28□□□□□ -0.12
PTCH1-209ENST00000437951 TMX4Q9H1E5 349 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-209ENST00000437951 LMOD2Q6P5Q4 547 aa14.28□□□□□ -0.12
PTCH1-209ENST00000437951 DIAPH3Q9NSV4 1193 aa14.28□□□□□ -0.12
PTCH1-209ENST00000437951 NEUROD2Q15784 382 aa14.27□□□□□ -0.13
PTCH1-209ENST00000437951 FAM43AQ8N2R8 423 aa14.27□□□□□ -0.13
PTCH1-209ENST00000437951 CHMP7Q8WUX9 453 aaPredicted RBP14.27□□□□□ -0.13
PTCH1-209ENST00000437951 TAOK2Q9UL54 1235 aa14.27□□□□□ -0.13
PTCH1-209ENST00000437951 RUFY1Q96T51 708 aa14.26□□□□□ -0.13
PTCH1-209ENST00000437951 HSP90B2PQ58FF3 399 aa14.26□□□□□ -0.13
PTCH1-209ENST00000437951 CEP162Q5TB80 1403 aa14.26□□□□□ -0.13
PTCH1-209ENST00000437951 RALBP1Q15311 655 aa14.26□□□□□ -0.13
PTCH1-209ENST00000437951 ERCC4Q92889 916 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-209ENST00000437951 IPO7O95373 1038 aaKnown RBP14.24□□□□□ -0.13
PTCH1-209ENST00000437951 PDE3BQ13370 1112 aa14.24□□□□□ -0.13
PTCH1-209ENST00000437951 FAM13BQ9NYF5 915 aa14.23□□□□□ -0.13
PTCH1-209ENST00000437951 BECN2A8MW95 431 aa14.23□□□□□ -0.13
PTCH1-209ENST00000437951 ISY1Q9ULR0 285 aaKnown RBP14.23□□□□□ -0.13
PTCH1-209ENST00000437951 TPD52L1Q16890 204 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-209ENST00000437951 KRI1Q8N9T8 703 aaKnown RBP14.23□□□□□ -0.13
PTCH1-209ENST00000437951 PODXL2Q9NZ53 605 aa14.23□□□□□ -0.13
PTCH1-209ENST00000437951 CCAR2Q8N163 923 aaKnown RBP14.22□□□□□ -0.13
PTCH1-209ENST00000437951 ANKRD20A12PQ8NF67 263 aa14.22□□□□□ -0.13
PTCH1-209ENST00000437951 DDX49Q9Y6V7 483 aaKnown RBP14.22□□□□□ -0.13
PTCH1-209ENST00000437951 HOOK1Q9UJC3 728 aaKnown RBP14.21□□□□□ -0.13
PTCH1-209ENST00000437951 KAT6BQ8WYB5 2073 aa14.21□□□□□ -0.13
PTCH1-209ENST00000437951 MFAP1P55081 439 aaKnown RBP14.21□□□□□ -0.13
PTCH1-209ENST00000437951 RRP7BPQ9NSQ0 103 aa14.2□□□□□ -0.14
PTCH1-209ENST00000437951 SCRIBQ14160 1630 aa14.2□□□□□ -0.14
PTCH1-209ENST00000437951 SENP3Q9H4L4 574 aaPredicted RBP14.2□□□□□ -0.14
PTCH1-209ENST00000437951 USP8P40818 1118 aa14.19□□□□□ -0.14
PTCH1-209ENST00000437951 CENPQQ7L2Z9 268 aaPredicted RBP14.19□□□□□ -0.14
PTCH1-209ENST00000437951 RASSF8Q8NHQ8 419 aa14.19□□□□□ -0.14
PTCH1-209ENST00000437951 U2SURPO15042 1029 aaKnown RBP14.19□□□□□ -0.14
PTCH1-209ENST00000437951 FAM161AQ3B820 660 aa14.19□□□□□ -0.14
PTCH1-209ENST00000437951 PATL2C9JE40 543 aaKnown RBP14.19□□□□□ -0.14
PTCH1-209ENST00000437951 SF3A1Q15459 793 aaKnown RBP14.19□□□□□ -0.14
PTCH1-209ENST00000437951 CCDC39Q9UFE4 941 aa14.19□□□□□ -0.14
PTCH1-209ENST00000437951 CC2D1BQ5T0F9 858 aaKnown RBP14.19□□□□□ -0.14
PTCH1-209ENST00000437951 H0YHG0 523 aa14.18□□□□□ -0.14
PTCH1-209ENST00000437951 DHX8Q14562 1220 aaKnown RBP14.18□□□□□ -0.14
PTCH1-209ENST00000437951 MYO6Q9UM54 1294 aa14.18□□□□□ -0.14
PTCH1-209ENST00000437951 ZRSR2Q15696 482 aaKnown RBP14.18□□□□□ -0.14
PTCH1-209ENST00000437951 ITPRIPQ8IWB1 547 aa14.18□□□□□ -0.14
PTCH1-209ENST00000437951 RTF1Q92541 710 aaKnown RBP14.18□□□□□ -0.14
PTCH1-209ENST00000437951 HMGN5P82970 282 aaKnown RBP14.18□□□□□ -0.14
PTCH1-209ENST00000437951 CCP110O43303 1012 aa14.17□□□□□ -0.14
PTCH1-209ENST00000437951 CEP164Q9UPV0 1460 aa14.17□□□□□ -0.14
PTCH1-209ENST00000437951 STK11IPQ8N1F8 1099 aa14.17□□□□□ -0.14
PTCH1-209ENST00000437951 LEKR1Q6ZMV7 388 aa14.16□□□□□ -0.14
PTCH1-209ENST00000437951 H3BQV1 296 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms