RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 KDM5BQ9UGL1 1544 aa31.15■■■□□ 2.58
PTPRF-207ENST00000436724 DNMT1P26358 1616 aaKnown RBP31.14■■■□□ 2.58
PTPRF-207ENST00000436724 ABCC5O15440 1437 aa31.13■■■□□ 2.57
PTPRF-207ENST00000436724 KCNH8Q96L42 1107 aa31.09■■■□□ 2.57
PTPRF-207ENST00000436724 MAPKBP1O60336 1514 aa31.09■■■□□ 2.57
PTPRF-207ENST00000436724 TTC37Q6PGP7 1564 aa31.06■■■□□ 2.56
PTPRF-207ENST00000436724 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.05■■■□□ 2.56
PTPRF-207ENST00000436724 GCC2Q8IWJ2 1684 aa31.04■■■□□ 2.56
PTPRF-207ENST00000436724 AKNAQ7Z591 1439 aa31.03■■■□□ 2.56
PTPRF-207ENST00000436724 CDC42BPBQ9Y5S2 1711 aa31.02■■■□□ 2.56
PTPRF-207ENST00000436724 KDM6BO15054 1643 aa31.01■■■□□ 2.55
PTPRF-207ENST00000436724 PREX2Q70Z35 1606 aa31.01■■■□□ 2.55
PTPRF-207ENST00000436724 ROCK1Q13464 1354 aa30.98■■■□□ 2.55
PTPRF-207ENST00000436724 CROCC2H7BZ55 1655 aa30.94■■■□□ 2.54
PTPRF-207ENST00000436724 SAMD9LQ8IVG5 1584 aa30.94■■■□□ 2.54
PTPRF-207ENST00000436724 HNRNPMP52272 730 aaKnown RBP eCLIP30.93■■■□□ 2.542e-6■■■■□ 25.3
PTPRF-207ENST00000436724 ARHGAP5Q13017 1502 aa30.92■■■□□ 2.54
PTPRF-207ENST00000436724 MYO5CQ9NQX4 1742 aa30.91■■■□□ 2.54
PTPRF-207ENST00000436724 NCOA1Q15788 1441 aa30.88■■■□□ 2.53
PTPRF-207ENST00000436724 SIN3AQ96ST3 1273 aa30.88■■■□□ 2.53
PTPRF-207ENST00000436724 MBD5Q9P267 1494 aa30.87■■■□□ 2.53
PTPRF-207ENST00000436724 WDR7Q9Y4E6 1490 aa30.87■■■□□ 2.53
PTPRF-207ENST00000436724 ADGBQ8N7X0 1667 aa30.87■■■□□ 2.53
PTPRF-207ENST00000436724 TRIM52Q96A61 297 aa30.86■■■□□ 2.53
PTPRF-207ENST00000436724 ADGRL2O95490 1459 aa30.84■■■□□ 2.53
PTPRF-207ENST00000436724 C9orf84Q5VXU9 1444 aa30.82■■■□□ 2.53
PTPRF-207ENST00000436724 PLCH2O75038 1416 aa30.82■■■□□ 2.52
PTPRF-207ENST00000436724 ARHGEF5Q12774 1597 aa30.82■■■□□ 2.52
PTPRF-207ENST00000436724 NEUROD1Q13562 356 aa30.82■■■□□ 2.52
PTPRF-207ENST00000436724 ASXL2Q76L83 1435 aa30.81■■■□□ 2.52
PTPRF-207ENST00000436724 SYCP2Q9BX26 1530 aa30.81■■■□□ 2.52
PTPRF-207ENST00000436724 ANKRD30AQ9BXX3 1397 aa30.8■■■□□ 2.52
PTPRF-207ENST00000436724 SHANK2Q9UPX8 1470 aa30.8■■■□□ 2.52
PTPRF-207ENST00000436724 TSPY4P0CV99 314 aa30.79■■■□□ 2.52
PTPRF-207ENST00000436724 TSPY10P0CW01 314 aa30.79■■■□□ 2.52
PTPRF-207ENST00000436724 CCDC141Q6ZP82 1450 aa30.77■■■□□ 2.52
PTPRF-207ENST00000436724 NPM1P06748 294 aaKnown RBP eCLIP30.76■■■□□ 2.52
PTPRF-207ENST00000436724 DENND4BO75064 1496 aaPredicted RBP30.76■■■□□ 2.51
PTPRF-207ENST00000436724 EFCAB2Q5VUJ9 269 aa30.73■■■□□ 2.51
PTPRF-207ENST00000436724 ARHGEF12Q9NZN5 1544 aa30.72■■■□□ 2.51
PTPRF-207ENST00000436724 MPHOSPH9Q99550 1183 aa30.71■■■□□ 2.51
PTPRF-207ENST00000436724 RSPH4AQ5TD94 716 aa30.7■■■□□ 2.51
PTPRF-207ENST00000436724 KIAA1107Q9UPP5 1409 aa30.69■■■□□ 2.5
PTPRF-207ENST00000436724 ANKRD50Q9ULJ7 1429 aa30.68■■■□□ 2.5
PTPRF-207ENST00000436724 ABCA9Q8IUA7 1624 aa30.68■■■□□ 2.5
PTPRF-207ENST00000436724 PLEKHH2Q8IVE3 1493 aa30.68■■■□□ 2.5
PTPRF-207ENST00000436724 CYB5RLQ6IPT4 315 aa30.67■■■□□ 2.5
PTPRF-207ENST00000436724 KIF15Q9NS87 1388 aa30.66■■■□□ 2.5
PTPRF-207ENST00000436724 FOXD1Q16676 465 aa30.65■■■□□ 2.5
PTPRF-207ENST00000436724 RIMBP3CA6NJZ7 1639 aa30.64■■■□□ 2.5
PTPRF-207ENST00000436724 RIMBP3BA6NNM3 1639 aa30.64■■■□□ 2.5
PTPRF-207ENST00000436724 RIMBP3Q9UFD9 1639 aa30.64■■■□□ 2.5
PTPRF-207ENST00000436724 ABCC1P33527 1531 aa30.64■■■□□ 2.49
PTPRF-207ENST00000436724 ZNF316A6NFI3 1004 aaPredicted RBP30.64■■■□□ 2.49
PTPRF-207ENST00000436724 ARAP3Q8WWN8 1544 aa30.63■■■□□ 2.49
PTPRF-207ENST00000436724 SLC4A1APQ9BWU0 796 aaKnown RBP30.59■■■□□ 2.49
PTPRF-207ENST00000436724 ACIN1Q9UKV3 1341 aaKnown RBP30.59■■■□□ 2.49
PTPRF-207ENST00000436724 TRAPPC8Q9Y2L5 1435 aa30.59■■■□□ 2.49
PTPRF-207ENST00000436724 FANCAO15360 1455 aa30.59■■■□□ 2.49
PTPRF-207ENST00000436724 MAST1Q9Y2H9 1570 aa30.58■■■□□ 2.49
PTPRF-207ENST00000436724 PZPP20742 1482 aa30.58■■■□□ 2.49
PTPRF-207ENST00000436724 TIMELESSQ9UNS1 1208 aa30.54■■■□□ 2.48
PTPRF-207ENST00000436724 AFAP1Q8N556 730 aa30.52■■■□□ 2.48
PTPRF-207ENST00000436724 TONSLQ96HA7 1378 aa30.52■■■□□ 2.48
PTPRF-207ENST00000436724 NUP155O75694 1391 aa30.48■■■□□ 2.47
PTPRF-207ENST00000436724 PLXNC1O60486 1568 aa30.48■■■□□ 2.47
PTPRF-207ENST00000436724 ANKRD30BQ9BXX2 1392 aa30.46■■■□□ 2.47
PTPRF-207ENST00000436724 PPP1R15AO75807 674 aaPredicted RBP30.46■■■□□ 2.47
PTPRF-207ENST00000436724 CD109Q6YHK3 1445 aa30.46■■■□□ 2.47
PTPRF-207ENST00000436724 ADGRL1O94910 1474 aa30.45■■■□□ 2.47
PTPRF-207ENST00000436724 SCAPERQ9BY12 1400 aa30.43■■■□□ 2.46
PTPRF-207ENST00000436724 SPAG9O60271 1321 aaKnown RBP30.43■■■□□ 2.46
PTPRF-207ENST00000436724 DIEXFQ68CQ4 756 aaKnown RBP30.42■■■□□ 2.46
PTPRF-207ENST00000436724 PKD2Q13563 968 aa30.42■■■□□ 2.46
PTPRF-207ENST00000436724 ZFYVE16Q7Z3T8 1539 aa30.38■■■□□ 2.45
PTPRF-207ENST00000436724 KDM5DQ9BY66 1539 aa30.38■■■□□ 2.45
PTPRF-207ENST00000436724 DUOX2Q9NRD8 1548 aa30.38■■■□□ 2.45
PTPRF-207ENST00000436724 RTEL1-TNFRSF6BF6WH68 1400 aa30.35■■■□□ 2.45
PTPRF-207ENST00000436724 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.33■■■□□ 2.45
PTPRF-207ENST00000436724 RPRD2Q5VT52 1461 aaKnown RBP30.33■■■□□ 2.45
PTPRF-207ENST00000436724 ERBINQ96RT1 1412 aa30.31■■■□□ 2.44
PTPRF-207ENST00000436724 FAM135AQ9P2D6 1515 aa30.31■■■□□ 2.44
PTPRF-207ENST00000436724 UNC13BO14795 1591 aa30.3■■■□□ 2.44
PTPRF-207ENST00000436724 ATP7AQ04656 1500 aa30.3■■■□□ 2.44
PTPRF-207ENST00000436724 INO80Q9ULG1 1556 aaPredicted RBP30.3■■■□□ 2.44
PTPRF-207ENST00000436724 MYT1LQ9UL68 1186 aa30.3■■■□□ 2.44
PTPRF-207ENST00000436724 L3MBTL2Q969R5 705 aa30.28■■■□□ 2.44
PTPRF-207ENST00000436724 CFAP74Q9C0B2 1584 aa30.27■■■□□ 2.44
PTPRF-207ENST00000436724 ZNF518AQ6AHZ1 1483 aa30.24■■■□□ 2.43
PTPRF-207ENST00000436724 MAP3K4Q9Y6R4 1608 aa30.22■■■□□ 2.43
PTPRF-207ENST00000436724 TEX14Q8IWB6 1497 aa30.21■■■□□ 2.43
PTPRF-207ENST00000436724 POGZQ7Z3K3 1410 aa30.2■■■□□ 2.42
PTPRF-207ENST00000436724 MAGI2Q86UL8 1455 aa30.2■■■□□ 2.42
PTPRF-207ENST00000436724 KIDINS220Q9ULH0 1771 aa30.2■■■□□ 2.42
PTPRF-207ENST00000436724 IQGAP3Q86VI3 1631 aa30.19■■■□□ 2.42
PTPRF-207ENST00000436724 FAM69CQ0P6D2 419 aa30.19■■■□□ 2.42
PTPRF-207ENST00000436724 GLI2P10070 1586 aa30.18■■■□□ 2.42
PTPRF-207ENST00000436724 NEO1Q92859 1461 aa30.18■■■□□ 2.42
PTPRF-207ENST00000436724 DIP2BQ9P265 1576 aa30.16■■■□□ 2.42
PTPRF-207ENST00000436724 HIRIP3Q9BW71 556 aaPredicted RBP30.15■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms