RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 ADCY10Q96PN6 1610 aa14.71□□□□□ -0.06
CD44-210ENST00000434472 ARID3CA6NKF2 412 aa14.7□□□□□ -0.06
CD44-210ENST00000434472 KDM6BO15054 1643 aa14.7□□□□□ -0.06
CD44-210ENST00000434472 DENND4BO75064 1496 aaPredicted RBP14.7□□□□□ -0.06
CD44-210ENST00000434472 JPH4Q96JJ6 628 aa14.66□□□□□ -0.06
CD44-210ENST00000434472 PRG4Q92954 1404 aaPredicted RBP14.66□□□□□ -0.06
CD44-210ENST00000434472 CAMSAP2Q08AD1 1489 aa14.66□□□□□ -0.06
CD44-210ENST00000434472 PLB1Q6P1J6 1458 aa14.65□□□□□ -0.06
CD44-210ENST00000434472 CFDP1Q9UEE9 299 aaPredicted RBP14.65□□□□□ -0.06
CD44-210ENST00000434472 ADGBQ8N7X0 1667 aa14.64□□□□□ -0.07
CD44-210ENST00000434472 ADGRL2O95490 1459 aa14.64□□□□□ -0.07
CD44-210ENST00000434472 GPATCH8Q9UKJ3 1502 aaKnown RBP14.64□□□□□ -0.07
CD44-210ENST00000434472 ANKRD30BQ9BXX2 1392 aa14.64□□□□□ -0.07
CD44-210ENST00000434472 FBLN2P98095 1184 aa14.63□□□□□ -0.07
CD44-210ENST00000434472 HIRIP3Q9BW71 556 aaPredicted RBP14.63□□□□□ -0.07
CD44-210ENST00000434472 RPRD2Q5VT52 1461 aaKnown RBP14.63□□□□□ -0.07
CD44-210ENST00000434472 ABCA8O94911 1581 aa14.63□□□□□ -0.07
CD44-210ENST00000434472 EIF4G2P78344 907 aaKnown RBP eCLIP14.62□□□□□ -0.07
CD44-210ENST00000434472 ZNF644Q9H582 1327 aaPredicted RBP14.62□□□□□ -0.07
CD44-210ENST00000434472 KCNH8Q96L42 1107 aa14.61□□□□□ -0.07
CD44-210ENST00000434472 SUPT16HQ9Y5B9 1047 aaKnown RBP14.61□□□□□ -0.07
CD44-210ENST00000434472 PLEKHD1A6NEE1 506 aa14.6□□□□□ -0.07
CD44-210ENST00000434472 HSPA5P11021 654 aaKnown RBP14.6□□□□□ -0.07
CD44-210ENST00000434472 CROCC2H7BZ55 1655 aa14.6□□□□□ -0.07
CD44-210ENST00000434472 NCOA1Q15788 1441 aa14.6□□□□□ -0.07
CD44-210ENST00000434472 ANKRD30AQ9BXX3 1397 aa14.59□□□□□ -0.07
CD44-210ENST00000434472 KIF14Q15058 1648 aa14.59□□□□□ -0.07
CD44-210ENST00000434472 L3MBTL2Q969R5 705 aa14.59□□□□□ -0.07
CD44-210ENST00000434472 SLC4A1APQ9BWU0 796 aaKnown RBP14.59□□□□□ -0.07
CD44-210ENST00000434472 SHANK2Q9UPX8 1470 aa14.58□□□□□ -0.08
CD44-210ENST00000434472 ABCC10Q5T3U5 1492 aa14.56□□□□□ -0.08
CD44-210ENST00000434472 ATP10BO94823 1461 aa14.55□□□□□ -0.08
CD44-210ENST00000434472 PZPP20742 1482 aa14.55□□□□□ -0.08
CD44-210ENST00000434472 TEX14Q8IWB6 1497 aa14.55□□□□□ -0.08
CD44-210ENST00000434472 ZNF777Q9ULD5 760 aaPredicted RBP14.54□□□□□ -0.08
CD44-210ENST00000434472 KIAA1107Q9UPP5 1409 aa14.54□□□□□ -0.08
CD44-210ENST00000434472 FOXD1Q16676 465 aa14.53□□□□□ -0.08
CD44-210ENST00000434472 WASHC2AQ641Q2 1341 aa14.53□□□□□ -0.08
CD44-210ENST00000434472 CNTLNQ9NXG0 1405 aa14.52□□□□□ -0.08
CD44-210ENST00000434472 CDC42BPAQ5VT25 1732 aa14.52□□□□□ -0.09
CD44-210ENST00000434472 PTPRGP23470 1445 aa14.51□□□□□ -0.09
CD44-210ENST00000434472 ANKRD50Q9ULJ7 1429 aa14.5□□□□□ -0.09
CD44-210ENST00000434472 ARHGEF5Q12774 1597 aa14.5□□□□□ -0.09
CD44-210ENST00000434472 CCDC7Q96M83 1385 aa14.5□□□□□ -0.09
CD44-210ENST00000434472 TSPY4P0CV99 314 aa14.49□□□□□ -0.09
CD44-210ENST00000434472 TSPY10P0CW01 314 aa14.49□□□□□ -0.09
CD44-210ENST00000434472 C9orf84Q5VXU9 1444 aa14.49□□□□□ -0.09
CD44-210ENST00000434472 KDM5DQ9BY66 1539 aa14.48□□□□□ -0.09
CD44-210ENST00000434472 NEFLP07196 543 aa14.48□□□□□ -0.09
CD44-210ENST00000434472 NBPF8Q3BBV2 869 aa14.48□□□□□ -0.09
CD44-210ENST00000434472 RSPH4AQ5TD94 716 aa14.48□□□□□ -0.09
CD44-210ENST00000434472 MBD5Q9P267 1494 aa14.47□□□□□ -0.09
CD44-210ENST00000434472 SPATA31E1Q6ZUB1 1445 aa14.45□□□□□ -0.1
CD44-210ENST00000434472 PKD2Q13563 968 aa14.45□□□□□ -0.1
CD44-210ENST00000434472 POLR1AO95602 1720 aaPredicted RBP14.45□□□□□ -0.1
CD44-210ENST00000434472 SHROOM2Q13796 1616 aa14.43□□□□□ -0.1
CD44-210ENST00000434472 NUP155O75694 1391 aa14.43□□□□□ -0.1
CD44-210ENST00000434472 CCDC141Q6ZP82 1450 aa14.43□□□□□ -0.1
CD44-210ENST00000434472 PREX2Q70Z35 1606 aa14.42□□□□□ -0.1
CD44-210ENST00000434472 ARID4BQ4LE39 1312 aaPredicted RBP14.42□□□□□ -0.1
CD44-210ENST00000434472 ARHGEF12Q9NZN5 1544 aa14.42□□□□□ -0.1
CD44-210ENST00000434472 FKBP8Q14318 412 aa14.41□□□□□ -0.1
CD44-210ENST00000434472 KIF15Q9NS87 1388 aa14.41□□□□□ -0.1
CD44-210ENST00000434472 UHRF1BP1Q6BDS2 1440 aa14.41□□□□□ -0.1
CD44-210ENST00000434472 CHD1O14646 1710 aa14.41□□□□□ -0.1
CD44-210ENST00000434472 MAST1Q9Y2H9 1570 aa14.39□□□□□ -0.11
CD44-210ENST00000434472 KIF7Q2M1P5 1343 aa14.39□□□□□ -0.11
CD44-210ENST00000434472 C11orf95C9JLR9 678 aaPredicted RBP14.39□□□□□ -0.11
CD44-210ENST00000434472 SAMD9LQ8IVG5 1584 aa14.39□□□□□ -0.11
CD44-210ENST00000434472 PLEKHH2Q8IVE3 1493 aa14.39□□□□□ -0.11
CD44-210ENST00000434472 HNRNPMP52272 730 aaKnown RBP eCLIP14.38□□□□□ -0.11
CD44-210ENST00000434472 PRKRIP1Q9H875 184 aaPredicted RBP14.38□□□□□ -0.11
CD44-210ENST00000434472 HNRNPUQ00839 825 aaKnown RBP eCLIP14.37□□□□□ -0.11
CD44-210ENST00000434472 RALGAPBQ86X10 1494 aa14.37□□□□□ -0.11
CD44-210ENST00000434472 CDC42BPBQ9Y5S2 1711 aa14.37□□□□□ -0.11
CD44-210ENST00000434472 ABCC2Q92887 1545 aa14.36□□□□□ -0.11
CD44-210ENST00000434472 USP47Q96K76 1375 aa14.35□□□□□ -0.11
CD44-210ENST00000434472 ROCK2O75116 1388 aaKnown RBP14.35□□□□□ -0.11
CD44-210ENST00000434472 MYT1Q01538 1121 aa14.34□□□□□ -0.11
CD44-210ENST00000434472 KDM5CP41229 1560 aa14.34□□□□□ -0.11
CD44-210ENST00000434472 ARHGAP5Q13017 1502 aa14.33□□□□□ -0.11
CD44-210ENST00000434472 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.32□□□□□ -0.12
CD44-210ENST00000434472 FAM135AQ9P2D6 1515 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 MRS2Q9HD23 443 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 UNC13BO14795 1591 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 PLXNC1O60486 1568 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 SYCP2Q9BX26 1530 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 MYO5CQ9NQX4 1742 aa14.31□□□□□ -0.12
CD44-210ENST00000434472 TTC37Q6PGP7 1564 aa14.3□□□□□ -0.12
CD44-210ENST00000434472 UHRF1BP1LA0JNW5 1464 aa14.3□□□□□ -0.12
CD44-210ENST00000434472 ERICH6BQ5W0A0 696 aa14.3□□□□□ -0.12
CD44-210ENST00000434472 ZNF326Q5BKZ1 582 aaKnown RBP14.3□□□□□ -0.12
CD44-210ENST00000434472 TSHZ2Q9NRE2 1034 aa14.3□□□□□ -0.12
CD44-210ENST00000434472 BCANQ96GW7 911 aa14.29□□□□□ -0.12
CD44-210ENST00000434472 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
CD44-210ENST00000434472 BCORL1Q5H9F3 1711 aa14.28□□□□□ -0.12
CD44-210ENST00000434472 DHX29Q7Z478 1369 aaKnown RBP14.27□□□□□ -0.12
CD44-210ENST00000434472 DUOX2Q9NRD8 1548 aa14.27□□□□□ -0.12
CD44-210ENST00000434472 ZBED9Q6R2W3 1325 aa14.27□□□□□ -0.13
CD44-210ENST00000434472 CLASP1Q7Z460 1538 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms