RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 TSPY4P0CV99 314 aa21.68■■□□□ 1.06
SCARF1-203ENST00000434376 TSPY10P0CW01 314 aa21.68■■□□□ 1.06
SCARF1-203ENST00000434376 C11orf95C9JLR9 678 aaPredicted RBP21.68■■□□□ 1.06
SCARF1-203ENST00000434376 CCDC184Q52MB2 194 aa21.66■■□□□ 1.06
SCARF1-203ENST00000434376 PTPN23Q9H3S7 1636 aa21.65■■□□□ 1.06
SCARF1-203ENST00000434376 GRIN2AQ12879 1464 aa21.64■■□□□ 1.05
SCARF1-203ENST00000434376 NEFLP07196 543 aa21.63■■□□□ 1.05
SCARF1-203ENST00000434376 LRRIQ1Q96JM4 1722 aa21.63■■□□□ 1.05
SCARF1-203ENST00000434376 SUPT6HQ7KZ85 1726 aaKnown RBP21.63■■□□□ 1.05
SCARF1-203ENST00000434376 EHBP1L1Q8N3D4 1523 aa21.62■■□□□ 1.05
SCARF1-203ENST00000434376 WASHC2AQ641Q2 1341 aa21.62■■□□□ 1.05
SCARF1-203ENST00000434376 SAMD9Q5K651 1589 aa21.61■■□□□ 1.05
SCARF1-203ENST00000434376 SALL2Q9Y467 1007 aaPredicted RBP21.61■■□□□ 1.05
SCARF1-203ENST00000434376 ADAMTS12P58397 1594 aa21.61■■□□□ 1.05
SCARF1-203ENST00000434376 KIAA0586Q9BVV6 1533 aa21.6■■□□□ 1.05
SCARF1-203ENST00000434376 KDM6BO15054 1643 aa21.6■■□□□ 1.05
SCARF1-203ENST00000434376 PBRM1Q86U86 1689 aa21.59■■□□□ 1.05
SCARF1-203ENST00000434376 NUP153P49790 1475 aaKnown RBP21.59■■□□□ 1.05
SCARF1-203ENST00000434376 DISP1Q96F81 1524 aa21.58■■□□□ 1.04
SCARF1-203ENST00000434376 TIMELESSQ9UNS1 1208 aa21.57■■□□□ 1.04
SCARF1-203ENST00000434376 UGGT2Q9NYU1 1516 aa21.57■■□□□ 1.04
SCARF1-203ENST00000434376 MRS2Q9HD23 443 aa21.57■■□□□ 1.04
SCARF1-203ENST00000434376 NUP155O75694 1391 aa21.56■■□□□ 1.04
SCARF1-203ENST00000434376 DCAF11Q8TEB1 546 aa21.56■■□□□ 1.04
SCARF1-203ENST00000434376 CARMIL2Q6F5E8 1435 aa21.56■■□□□ 1.04
SCARF1-203ENST00000434376 BCL11AQ9H165 835 aa21.55■■□□□ 1.04
SCARF1-203ENST00000434376 ABCC5O15440 1437 aa21.55■■□□□ 1.04
SCARF1-203ENST00000434376 HECW1Q76N89 1606 aa21.55■■□□□ 1.04
SCARF1-203ENST00000434376 EIF4G3O43432 1585 aaKnown RBP21.54■■□□□ 1.04
SCARF1-203ENST00000434376 DAPK1P53355 1430 aa21.53■■□□□ 1.04
SCARF1-203ENST00000434376 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.52■■□□□ 1.046e-8■■■■□ 21.9
SCARF1-203ENST00000434376 PTPRGP23470 1445 aa21.51■■□□□ 1.03
SCARF1-203ENST00000434376 WDR62O43379 1518 aa21.49■■□□□ 1.03
SCARF1-203ENST00000434376 ARHGEF11O15085 1522 aa21.48■■□□□ 1.03
SCARF1-203ENST00000434376 CARD11Q9BXL7 1154 aa21.47■■□□□ 1.03
SCARF1-203ENST00000434376 TROQ12816 1431 aaPredicted RBP21.45■■□□□ 1.02
SCARF1-203ENST00000434376 SYNJ2O15056 1496 aa21.45■■□□□ 1.02
SCARF1-203ENST00000434376 KIAA0556O60303 1618 aa21.43■■□□□ 1.02
SCARF1-203ENST00000434376 CEP170Q5SW79 1584 aa21.41■■□□□ 1.02
SCARF1-203ENST00000434376 MIA2Q96PC5 1412 aa21.4■■□□□ 1.02
SCARF1-203ENST00000434376 DENND4BO75064 1496 aaPredicted RBP21.4■■□□□ 1.02
SCARF1-203ENST00000434376 ANKRD30AQ9BXX3 1397 aa21.4■■□□□ 1.02
SCARF1-203ENST00000434376 KIF7Q2M1P5 1343 aa21.39■■□□□ 1.01
SCARF1-203ENST00000434376 CAMSAP2Q08AD1 1489 aa21.38■■□□□ 1.01
SCARF1-203ENST00000434376 ANKRD30BQ9BXX2 1392 aa21.38■■□□□ 1.01
SCARF1-203ENST00000434376 RBM19Q9Y4C8 960 aaKnown RBP21.38■■□□□ 1.01
SCARF1-203ENST00000434376 GPATCH8Q9UKJ3 1502 aaKnown RBP21.38■■□□□ 1.01
SCARF1-203ENST00000434376 ST20-MTHFSA0A0A6YYL1 179 aa21.37■■□□□ 1.01
SCARF1-203ENST00000434376 ANKRD50Q9ULJ7 1429 aa21.36■■□□□ 1.01
SCARF1-203ENST00000434376 KIF14Q15058 1648 aa21.36■■□□□ 1.01
SCARF1-203ENST00000434376 ERICH6Q7L0X2 663 aa21.36■■□□□ 1.01
SCARF1-203ENST00000434376 RAPGEF6Q8TEU7 1601 aa21.35■■□□□ 1.01
SCARF1-203ENST00000434376 CCER2I3L3R5 266 aa21.35■■□□□ 1.01
SCARF1-203ENST00000434376 NCOA1Q15788 1441 aa21.34■■□□□ 1.01
SCARF1-203ENST00000434376 ATP10BO94823 1461 aa21.34■■□□□ 1.01
SCARF1-203ENST00000434376 AFAP1Q8N556 730 aa21.34■■□□□ 1.01
SCARF1-203ENST00000434376 PRKRIP1Q9H875 184 aaPredicted RBP21.34■■□□□ 1.01
SCARF1-203ENST00000434376 KIF15Q9NS87 1388 aa21.33■■□□□ 1.01
SCARF1-203ENST00000434376 MAGI1Q96QZ7 1491 aaPredicted RBP21.33■■□□□ 1.01
SCARF1-203ENST00000434376 NBPF1Q3BBV0 1214 aa21.32■■□□□ 1
SCARF1-203ENST00000434376 CHGAP10645 457 aaKnown RBP21.31■■□□□ 1
SCARF1-203ENST00000434376 CCDC7Q96M83 1385 aa21.3■■□□□ 1
SCARF1-203ENST00000434376 TCOF1Q13428 1488 aaKnown RBP21.29■■□□□ 1
SCARF1-203ENST00000434376 AKNAQ7Z591 1439 aa21.28■■□□□ 1
SCARF1-203ENST00000434376 C9orf84Q5VXU9 1444 aa21.28■■□□□ 1
SCARF1-203ENST00000434376 USP47Q96K76 1375 aa21.27■■□□□ 1
SCARF1-203ENST00000434376 TMC1Q8TDI8 760 aa21.27■□□□□ 0.99
SCARF1-203ENST00000434376 CC2D1BQ5T0F9 858 aaKnown RBP21.26■□□□□ 0.99
SCARF1-203ENST00000434376 B4GALNT3Q6L9W6 998 aa21.22■□□□□ 0.99
SCARF1-203ENST00000434376 NUP160Q12769 1436 aa21.2■□□□□ 0.98
SCARF1-203ENST00000434376 ROCK1Q13464 1354 aa21.19■□□□□ 0.98
SCARF1-203ENST00000434376 RPRD2Q5VT52 1461 aaKnown RBP21.18■□□□□ 0.98
SCARF1-203ENST00000434376 ROCK2O75116 1388 aaKnown RBP21.18■□□□□ 0.98
SCARF1-203ENST00000434376 PZPP20742 1482 aa21.18■□□□□ 0.98
SCARF1-203ENST00000434376 KIAA1107Q9UPP5 1409 aa21.18■□□□□ 0.98
SCARF1-203ENST00000434376 NUTM2DQ5VT03 806 aaPredicted RBP21.17■□□□□ 0.98
SCARF1-203ENST00000434376 ERCC6L2Q5T890 1561 aa21.17■□□□□ 0.98
SCARF1-203ENST00000434376 KDM5BQ9UGL1 1544 aa21.17■□□□□ 0.98
SCARF1-203ENST00000434376 KIF3BO15066 747 aa21.15■□□□□ 0.98
SCARF1-203ENST00000434376 CNTLNQ9NXG0 1405 aa21.14■□□□□ 0.98
SCARF1-203ENST00000434376 ARHGAP5Q13017 1502 aa21.14■□□□□ 0.98
SCARF1-203ENST00000434376 EFCAB2Q5VUJ9 269 aa21.14■□□□□ 0.97
SCARF1-203ENST00000434376 DNMT1P26358 1616 aaKnown RBP21.11■□□□□ 0.97
SCARF1-203ENST00000434376 GGT6Q6P531 493 aa21.11■□□□□ 0.97
SCARF1-203ENST00000434376 SPAG9O60271 1321 aaKnown RBP21.09■□□□□ 0.97
SCARF1-203ENST00000434376 MSH5O43196 834 aa21.07■□□□□ 0.96
SCARF1-203ENST00000434376 PLEKHH2Q8IVE3 1493 aa21.07■□□□□ 0.96
SCARF1-203ENST00000434376 CCDC144AA2RUR9 1427 aa21.07■□□□□ 0.96
SCARF1-203ENST00000434376 TEX14Q8IWB6 1497 aa21.07■□□□□ 0.96
SCARF1-203ENST00000434376 GCC2Q8IWJ2 1684 aa21.05■□□□□ 0.96
SCARF1-203ENST00000434376 NPM1P06748 294 aaKnown RBP eCLIP21.04■□□□□ 0.96
SCARF1-203ENST00000434376 SYCP2Q9BX26 1530 aa21.02■□□□□ 0.96
SCARF1-203ENST00000434376 TNNT2P45379 298 aaPredicted RBP21.02■□□□□ 0.96
SCARF1-203ENST00000434376 SAFB2Q14151 953 aaKnown RBP eCLIP21.01■□□□□ 0.95
SCARF1-203ENST00000434376 PANK3Q9H999 370 aa21■□□□□ 0.95
SCARF1-203ENST00000434376 ABCC10Q5T3U5 1492 aa20.99■□□□□ 0.95
SCARF1-203ENST00000434376 PLPPR3Q6T4P5 718 aa20.96■□□□□ 0.95
SCARF1-203ENST00000434376 CCDC141Q6ZP82 1450 aa20.96■□□□□ 0.95
SCARF1-203ENST00000434376 ABCA8O94911 1581 aa20.95■□□□□ 0.94
SCARF1-203ENST00000434376 TRAPPC8Q9Y2L5 1435 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms