RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PLCH2O75038 1416 aa19.59■□□□□ 0.73
USP40-205ENST00000430158 TEX14Q8IWB6 1497 aa19.57■□□□□ 0.72
USP40-205ENST00000430158 ARAP3Q8WWN8 1544 aa19.56■□□□□ 0.72
USP40-205ENST00000430158 MYO5CQ9NQX4 1742 aa19.56■□□□□ 0.72
USP40-205ENST00000430158 COL17A1Q9UMD9 1497 aaPredicted RBP19.55■□□□□ 0.72
USP40-205ENST00000430158 HOXD11P31277 338 aaPredicted RBP19.55■□□□□ 0.72
USP40-205ENST00000430158 CDC42BPAQ5VT25 1732 aa19.55■□□□□ 0.72
USP40-205ENST00000430158 PPP4R3CPQ6ZMV5 832 aa19.55■□□□□ 0.72
USP40-205ENST00000430158 CDC42BPBQ9Y5S2 1711 aa19.54■□□□□ 0.72
USP40-205ENST00000430158 GPATCH8Q9UKJ3 1502 aaKnown RBP19.54■□□□□ 0.72
USP40-205ENST00000430158 DCAF8L1A6NGE4 600 aa19.53■□□□□ 0.72
USP40-205ENST00000430158 NCOA2Q15596 1464 aa19.53■□□□□ 0.72
USP40-205ENST00000430158 NEO1Q92859 1461 aa19.53■□□□□ 0.72
USP40-205ENST00000430158 SUPT6HQ7KZ85 1726 aaKnown RBP19.52■□□□□ 0.72
USP40-205ENST00000430158 PREX2Q70Z35 1606 aa19.51■□□□□ 0.71
USP40-205ENST00000430158 FANCAO15360 1455 aa19.5■□□□□ 0.71
USP40-205ENST00000430158 PHLDB1Q86UU1 1377 aa19.5■□□□□ 0.71
USP40-205ENST00000430158 APLP2Q06481 763 aa19.49■□□□□ 0.71
USP40-205ENST00000430158 AKNAQ7Z591 1439 aa19.48■□□□□ 0.71
USP40-205ENST00000430158 CCNB3Q8WWL7 1395 aa19.46■□□□□ 0.71
USP40-205ENST00000430158 EFCAB2Q5VUJ9 269 aa19.46■□□□□ 0.71
USP40-205ENST00000430158 KDM6BO15054 1643 aa19.46■□□□□ 0.71
USP40-205ENST00000430158 CFAP74Q9C0B2 1584 aa19.45■□□□□ 0.7
USP40-205ENST00000430158 RNF39Q9H2S5 420 aa19.45■□□□□ 0.7
USP40-205ENST00000430158 ARHGAP5Q13017 1502 aa19.45■□□□□ 0.7
USP40-205ENST00000430158 SAMD9LQ8IVG5 1584 aa19.41■□□□□ 0.7
USP40-205ENST00000430158 ITSN2Q9NZM3 1697 aa19.41■□□□□ 0.7
USP40-205ENST00000430158 ARHGEF12Q9NZN5 1544 aa19.41■□□□□ 0.7
USP40-205ENST00000430158 FRMPD1Q5SYB0 1578 aa19.4■□□□□ 0.7
USP40-205ENST00000430158 CFDP1Q9UEE9 299 aaPredicted RBP19.4■□□□□ 0.7
USP40-205ENST00000430158 RICTORQ6R327 1708 aa19.39■□□□□ 0.7
USP40-205ENST00000430158 SCAPERQ9BY12 1400 aa19.39■□□□□ 0.69
USP40-205ENST00000430158 ADGRL1O94910 1474 aa19.39■□□□□ 0.69
USP40-205ENST00000430158 ABCC1P33527 1531 aa19.39■□□□□ 0.69
USP40-205ENST00000430158 MYOM3Q5VTT5 1437 aa19.38■□□□□ 0.69
USP40-205ENST00000430158 DENND4BO75064 1496 aaPredicted RBP19.37■□□□□ 0.69
USP40-205ENST00000430158 ZNF644Q9H582 1327 aaPredicted RBP19.37■□□□□ 0.69
USP40-205ENST00000430158 RAPGEF3O95398 923 aa19.37■□□□□ 0.69
USP40-205ENST00000430158 POGZQ7Z3K3 1410 aa19.35■□□□□ 0.69
USP40-205ENST00000430158 KIAA1107Q9UPP5 1409 aa19.35■□□□□ 0.69
USP40-205ENST00000430158 MIA2Q96PC5 1412 aa19.34■□□□□ 0.69
USP40-205ENST00000430158 MBD5Q9P267 1494 aa19.34■□□□□ 0.69
USP40-205ENST00000430158 TRAPPC8Q9Y2L5 1435 aa19.33■□□□□ 0.68
USP40-205ENST00000430158 PPARGC1BQ86YN6 1023 aaKnown RBP19.32■□□□□ 0.68
USP40-205ENST00000430158 ZNF777Q9ULD5 760 aaPredicted RBP19.32■□□□□ 0.68
USP40-205ENST00000430158 PLEKHH2Q8IVE3 1493 aa19.32■□□□□ 0.68
USP40-205ENST00000430158 ZMYM4Q5VZL5 1548 aa19.31■□□□□ 0.68
USP40-205ENST00000430158 SYCP2Q9BX26 1530 aa19.31■□□□□ 0.68
USP40-205ENST00000430158 KDM5CP41229 1560 aa19.31■□□□□ 0.68
USP40-205ENST00000430158 CAMSAP2Q08AD1 1489 aa19.3■□□□□ 0.68
USP40-205ENST00000430158 AFAP1Q8N556 730 aa19.3■□□□□ 0.68
USP40-205ENST00000430158 FGD6Q6ZV73 1430 aa19.3■□□□□ 0.68
USP40-205ENST00000430158 HNRNPMP52272 730 aaKnown RBP eCLIP19.29■□□□□ 0.68
USP40-205ENST00000430158 ZNF518AQ6AHZ1 1483 aa19.28■□□□□ 0.68
USP40-205ENST00000430158 CNKSR2Q8WXI2 1034 aa19.28■□□□□ 0.68
USP40-205ENST00000430158 TCOF1Q13428 1488 aaKnown RBP19.28■□□□□ 0.68
USP40-205ENST00000430158 PTPN23Q9H3S7 1636 aa19.26■□□□□ 0.67
USP40-205ENST00000430158 ARHGEF5Q12774 1597 aa19.24■□□□□ 0.67
USP40-205ENST00000430158 MAGI2Q86UL8 1455 aa19.24■□□□□ 0.67
USP40-205ENST00000430158 MLH3Q9UHC1 1453 aa19.24■□□□□ 0.67
USP40-205ENST00000430158 RNF216Q9NWF9 866 aaPredicted RBP19.24■□□□□ 0.67
USP40-205ENST00000430158 KIDINS220Q9ULH0 1771 aa19.22■□□□□ 0.67
USP40-205ENST00000430158 YEATS2Q9ULM3 1422 aa19.22■□□□□ 0.67
USP40-205ENST00000430158 ARHGEF40Q8TER5 1519 aa19.2■□□□□ 0.66
USP40-205ENST00000430158 HECW2Q9P2P5 1572 aa19.2■□□□□ 0.66
USP40-205ENST00000430158 RSPH4AQ5TD94 716 aa19.2■□□□□ 0.66
USP40-205ENST00000430158 CCDC141Q6ZP82 1450 aa19.2■□□□□ 0.66
USP40-205ENST00000430158 ZFYVE16Q7Z3T8 1539 aa19.19■□□□□ 0.66
USP40-205ENST00000430158 INO80Q9ULG1 1556 aaPredicted RBP19.19■□□□□ 0.66
USP40-205ENST00000430158 ABCC5O15440 1437 aa19.17■□□□□ 0.66
USP40-205ENST00000430158 RRBP1Q9P2E9 1410 aaKnown RBP19.17■□□□□ 0.66
USP40-205ENST00000430158 DIP2CQ9Y2E4 1556 aa19.16■□□□□ 0.66
USP40-205ENST00000430158 ABCA6Q8N139 1617 aa19.16■□□□□ 0.66
USP40-205ENST00000430158 SPAG9O60271 1321 aaKnown RBP19.16■□□□□ 0.66
USP40-205ENST00000430158 SIGLEC1Q9BZZ2 1709 aa19.16■□□□□ 0.66
USP40-205ENST00000430158 RTEL1-TNFRSF6BF6WH68 1400 aa19.16■□□□□ 0.66
USP40-205ENST00000430158 DNMT1P26358 1616 aaKnown RBP19.15■□□□□ 0.66
USP40-205ENST00000430158 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.15■□□□□ 0.66
USP40-205ENST00000430158 ATP7AQ04656 1500 aa19.15■□□□□ 0.66
USP40-205ENST00000430158 MAST1Q9Y2H9 1570 aa19.15■□□□□ 0.66
USP40-205ENST00000430158 ATP10AO60312 1499 aa19.14■□□□□ 0.65
USP40-205ENST00000430158 DAPK1P53355 1430 aa19.13■□□□□ 0.65
USP40-205ENST00000430158 CROCC2H7BZ55 1655 aa19.12■□□□□ 0.65
USP40-205ENST00000430158 REREQ9P2R6 1566 aa19.11■□□□□ 0.65
USP40-205ENST00000430158 SHANK2Q9UPX8 1470 aa19.1■□□□□ 0.65
USP40-205ENST00000430158 PTPRKQ15262 1439 aa19.1■□□□□ 0.65
USP40-205ENST00000430158 C9orf84Q5VXU9 1444 aa19.09■□□□□ 0.65
USP40-205ENST00000430158 C1QBPQ07021 282 aaKnown RBP19.09■□□□□ 0.65
USP40-205ENST00000430158 FAM50AQ14320 339 aaKnown RBP19.09■□□□□ 0.65
USP40-205ENST00000430158 TSPY4P0CV99 314 aa19.08■□□□□ 0.64
USP40-205ENST00000430158 TSPY10P0CW01 314 aa19.08■□□□□ 0.64
USP40-205ENST00000430158 ADGBQ8N7X0 1667 aa19.07■□□□□ 0.64
USP40-205ENST00000430158 PLXNC1O60486 1568 aa19.06■□□□□ 0.64
USP40-205ENST00000430158 AGLP35573 1532 aa19.05■□□□□ 0.64
USP40-205ENST00000430158 ADGRL2O95490 1459 aa19.04■□□□□ 0.64
USP40-205ENST00000430158 A2MP01023 1474 aa19.03■□□□□ 0.64
USP40-205ENST00000430158 MYT1LQ9UL68 1186 aa19.03■□□□□ 0.64
USP40-205ENST00000430158 DHX29Q7Z478 1369 aaKnown RBP19.03■□□□□ 0.64
USP40-205ENST00000430158 NCOA1Q15788 1441 aa19.02■□□□□ 0.64
USP40-205ENST00000430158 BCORL1Q5H9F3 1711 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms