RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RGL3Q3MIN7 710 aa11.81□□□□□ -0.52
CD44-208ENST00000428726 TCOF1Q13428 1488 aaKnown RBP11.81□□□□□ -0.52
CD44-208ENST00000428726 UACAQ9BZF9 1416 aa11.81□□□□□ -0.52
CD44-208ENST00000428726 HSPA5P11021 654 aaKnown RBP11.81□□□□□ -0.52
CD44-208ENST00000428726 MYT1LQ9UL68 1186 aa11.81□□□□□ -0.52
CD44-208ENST00000428726 CCDC184Q52MB2 194 aa11.8□□□□□ -0.52
CD44-208ENST00000428726 NAIPQ13075 1403 aa11.8□□□□□ -0.52
CD44-208ENST00000428726 KIAA0556O60303 1618 aa11.8□□□□□ -0.52
CD44-208ENST00000428726 C11orf95C9JLR9 678 aaPredicted RBP11.8□□□□□ -0.52
CD44-208ENST00000428726 MAGI1Q96QZ7 1491 aaPredicted RBP11.79□□□□□ -0.52
CD44-208ENST00000428726 MIA2Q96PC5 1412 aa11.79□□□□□ -0.52
CD44-208ENST00000428726 DISP1Q96F81 1524 aa11.79□□□□□ -0.52
CD44-208ENST00000428726 ANP32CO43423 234 aa11.78□□□□□ -0.52
CD44-208ENST00000428726 FAM9BQ8IZU0 186 aa11.78□□□□□ -0.52
CD44-208ENST00000428726 NBPF8Q3BBV2 869 aa11.78□□□□□ -0.52
CD44-208ENST00000428726 FKBP8Q14318 412 aa11.77□□□□□ -0.52
CD44-208ENST00000428726 PLEKHD1A6NEE1 506 aa11.77□□□□□ -0.53
CD44-208ENST00000428726 CDK11AQ9UQ88 783 aaPredicted RBP11.76□□□□□ -0.53
CD44-208ENST00000428726 SUPT16HQ9Y5B9 1047 aaKnown RBP11.76□□□□□ -0.53
CD44-208ENST00000428726 AKNAQ7Z591 1439 aa11.75□□□□□ -0.53
CD44-208ENST00000428726 SYNJ2O15056 1496 aa11.75□□□□□ -0.53
CD44-208ENST00000428726 PKD2Q13563 968 aa11.75□□□□□ -0.53
CD44-208ENST00000428726 SALL2Q9Y467 1007 aaPredicted RBP11.75□□□□□ -0.53
CD44-208ENST00000428726 KDM6BO15054 1643 aa11.75□□□□□ -0.53
CD44-208ENST00000428726 RAPGEF6Q8TEU7 1601 aa11.75□□□□□ -0.53
CD44-208ENST00000428726 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
CD44-208ENST00000428726 GCC2Q8IWJ2 1684 aa11.74□□□□□ -0.53
CD44-208ENST00000428726 NUP153P49790 1475 aaKnown RBP11.73□□□□□ -0.53
CD44-208ENST00000428726 CEP170Q5SW79 1584 aa11.72□□□□□ -0.53
CD44-208ENST00000428726 WASHC2AQ641Q2 1341 aa11.71□□□□□ -0.54
CD44-208ENST00000428726 CARMIL2Q6F5E8 1435 aa11.69□□□□□ -0.54
CD44-208ENST00000428726 NUP160Q12769 1436 aa11.69□□□□□ -0.54
CD44-208ENST00000428726 EIF4G2P78344 907 aaKnown RBP eCLIP11.68□□□□□ -0.54
CD44-208ENST00000428726 TSPY4P0CV99 314 aa11.68□□□□□ -0.54
CD44-208ENST00000428726 TSPY10P0CW01 314 aa11.68□□□□□ -0.54
CD44-208ENST00000428726 ROCK1Q13464 1354 aa11.67□□□□□ -0.54
CD44-208ENST00000428726 DAPK1P53355 1430 aa11.67□□□□□ -0.54
CD44-208ENST00000428726 TROQ12816 1431 aaPredicted RBP11.67□□□□□ -0.54
CD44-208ENST00000428726 DCAF11Q8TEB1 546 aa11.67□□□□□ -0.54
CD44-208ENST00000428726 DNMT1P26358 1616 aaKnown RBP11.66□□□□□ -0.54
CD44-208ENST00000428726 ABCC5O15440 1437 aa11.65□□□□□ -0.54
CD44-208ENST00000428726 NUP155O75694 1391 aa11.65□□□□□ -0.54
CD44-208ENST00000428726 ITSN2Q9NZM3 1697 aa11.64□□□□□ -0.55
CD44-208ENST00000428726 DENND4BO75064 1496 aaPredicted RBP11.63□□□□□ -0.55
CD44-208ENST00000428726 MRS2Q9HD23 443 aa11.63□□□□□ -0.55
CD44-208ENST00000428726 ADCY10Q96PN6 1610 aa11.63□□□□□ -0.55
CD44-208ENST00000428726 PTPRGP23470 1445 aa11.62□□□□□ -0.55
CD44-208ENST00000428726 TSHZ2Q9NRE2 1034 aa11.61□□□□□ -0.55
CD44-208ENST00000428726 KDM5BQ9UGL1 1544 aa11.61□□□□□ -0.55
CD44-208ENST00000428726 AFAP1Q8N556 730 aa11.6□□□□□ -0.55
CD44-208ENST00000428726 GPATCH8Q9UKJ3 1502 aaKnown RBP11.6□□□□□ -0.55
CD44-208ENST00000428726 CAMSAP2Q08AD1 1489 aa11.6□□□□□ -0.55
CD44-208ENST00000428726 ABCA8O94911 1581 aa11.59□□□□□ -0.55
CD44-208ENST00000428726 CARD11Q9BXL7 1154 aa11.59□□□□□ -0.55
CD44-208ENST00000428726 KIF14Q15058 1648 aa11.59□□□□□ -0.55
CD44-208ENST00000428726 NBPF1Q3BBV0 1214 aa11.59□□□□□ -0.55
CD44-208ENST00000428726 ST20-MTHFSA0A0A6YYL1 179 aa11.57□□□□□ -0.56
CD44-208ENST00000428726 ADGBQ8N7X0 1667 aa11.57□□□□□ -0.56
CD44-208ENST00000428726 KIF7Q2M1P5 1343 aa11.56□□□□□ -0.56
CD44-208ENST00000428726 NEFLP07196 543 aa11.56□□□□□ -0.56
CD44-208ENST00000428726 NUTM2DQ5VT03 806 aaPredicted RBP11.56□□□□□ -0.56
CD44-208ENST00000428726 ANKRD30BQ9BXX2 1392 aa11.56□□□□□ -0.56
CD44-208ENST00000428726 ATP10BO94823 1461 aa11.56□□□□□ -0.56
CD44-208ENST00000428726 NCOA1Q15788 1441 aa11.56□□□□□ -0.56
CD44-208ENST00000428726 ADGRL2O95490 1459 aa11.55□□□□□ -0.56
CD44-208ENST00000428726 CCER2I3L3R5 266 aa11.55□□□□□ -0.56
CD44-208ENST00000428726 ERCC6L2Q5T890 1561 aa11.55□□□□□ -0.56
CD44-208ENST00000428726 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
CD44-208ENST00000428726 CROCC2H7BZ55 1655 aa11.55□□□□□ -0.56
CD44-208ENST00000428726 RPRD2Q5VT52 1461 aaKnown RBP11.54□□□□□ -0.56
CD44-208ENST00000428726 ABCC10Q5T3U5 1492 aa11.53□□□□□ -0.56
CD44-208ENST00000428726 CDC42BPAQ5VT25 1732 aa11.53□□□□□ -0.56
CD44-208ENST00000428726 ANKRD30AQ9BXX3 1397 aa11.53□□□□□ -0.56
CD44-208ENST00000428726 CC2D1BQ5T0F9 858 aaKnown RBP11.53□□□□□ -0.56
CD44-208ENST00000428726 ANKRD50Q9ULJ7 1429 aa11.52□□□□□ -0.56
CD44-208ENST00000428726 KIF15Q9NS87 1388 aa11.52□□□□□ -0.57
CD44-208ENST00000428726 PRKRIP1Q9H875 184 aaPredicted RBP11.52□□□□□ -0.57
CD44-208ENST00000428726 PZPP20742 1482 aa11.51□□□□□ -0.57
CD44-208ENST00000428726 SHANK2Q9UPX8 1470 aa11.5□□□□□ -0.57
CD44-208ENST00000428726 CHD1O14646 1710 aa11.49□□□□□ -0.57
CD44-208ENST00000428726 TEX14Q8IWB6 1497 aa11.49□□□□□ -0.57
CD44-208ENST00000428726 B4GALNT3Q6L9W6 998 aa11.49□□□□□ -0.57
CD44-208ENST00000428726 CCDC7Q96M83 1385 aa11.48□□□□□ -0.57
CD44-208ENST00000428726 C9orf84Q5VXU9 1444 aa11.48□□□□□ -0.57
CD44-208ENST00000428726 KIAA1107Q9UPP5 1409 aa11.48□□□□□ -0.57
CD44-208ENST00000428726 USP47Q96K76 1375 aa11.47□□□□□ -0.57
CD44-208ENST00000428726 PLPPR3Q6T4P5 718 aa11.47□□□□□ -0.57
CD44-208ENST00000428726 SHROOM2Q13796 1616 aa11.46□□□□□ -0.57
CD44-208ENST00000428726 ARHGEF5Q12774 1597 aa11.46□□□□□ -0.58
CD44-208ENST00000428726 KIF3BO15066 747 aa11.45□□□□□ -0.58
CD44-208ENST00000428726 GGT6Q6P531 493 aa11.45□□□□□ -0.58
CD44-208ENST00000428726 TMC1Q8TDI8 760 aa11.45□□□□□ -0.58
CD44-208ENST00000428726 MYT1Q01538 1121 aa11.44□□□□□ -0.58
CD44-208ENST00000428726 RSPH4AQ5TD94 716 aa11.44□□□□□ -0.58
CD44-208ENST00000428726 PREX2Q70Z35 1606 aa11.43□□□□□ -0.58
CD44-208ENST00000428726 SAFB2Q14151 953 aaKnown RBP eCLIP11.43□□□□□ -0.58
CD44-208ENST00000428726 MBD5Q9P267 1494 aa11.43□□□□□ -0.58
CD44-208ENST00000428726 ROCK2O75116 1388 aaKnown RBP11.42□□□□□ -0.58
CD44-208ENST00000428726 TNNT2P45379 298 aaPredicted RBP11.42□□□□□ -0.58
CD44-208ENST00000428726 KDM5DQ9BY66 1539 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms