RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 NBPF8Q3BBV2 869 aa16.82■□□□□ 0.28
PTPRN-204ENST00000423636 WDR62O43379 1518 aa16.82■□□□□ 0.28
PTPRN-204ENST00000423636 HECW1Q76N89 1606 aa16.8■□□□□ 0.28
PTPRN-204ENST00000423636 IRX6P78412 446 aaPredicted RBP16.79■□□□□ 0.28
PTPRN-204ENST00000423636 CEP170Q5SW79 1584 aa16.79■□□□□ 0.28
PTPRN-204ENST00000423636 CCDC184Q52MB2 194 aa16.79■□□□□ 0.28
PTPRN-204ENST00000423636 PKD2Q13563 968 aa16.78■□□□□ 0.28
PTPRN-204ENST00000423636 ABCC5O15440 1437 aa16.77■□□□□ 0.28
PTPRN-204ENST00000423636 KIAA0556O60303 1618 aa16.77■□□□□ 0.28
PTPRN-204ENST00000423636 DENND4BO75064 1496 aaPredicted RBP16.77■□□□□ 0.27
PTPRN-204ENST00000423636 SUPT16HQ9Y5B9 1047 aaKnown RBP16.76■□□□□ 0.27
PTPRN-204ENST00000423636 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRN-204ENST00000423636 RGL3Q3MIN7 710 aa16.76■□□□□ 0.27
PTPRN-204ENST00000423636 WASHC2AQ641Q2 1341 aa16.75■□□□□ 0.27
PTPRN-204ENST00000423636 DAPK1P53355 1430 aa16.75■□□□□ 0.27
PTPRN-204ENST00000423636 FKBP8Q14318 412 aa16.74■□□□□ 0.27
PTPRN-204ENST00000423636 SYNJ2O15056 1496 aa16.73■□□□□ 0.27
PTPRN-204ENST00000423636 FAM9BQ8IZU0 186 aa16.73■□□□□ 0.27
PTPRN-204ENST00000423636 KIF14Q15058 1648 aa16.72■□□□□ 0.27
PTPRN-204ENST00000423636 EIF4G2P78344 907 aaKnown RBP eCLIP16.72■□□□□ 0.27
PTPRN-204ENST00000423636 ARHGEF11O15085 1522 aa16.72■□□□□ 0.27
PTPRN-204ENST00000423636 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPRN-204ENST00000423636 CARMIL2Q6F5E8 1435 aa16.7■□□□□ 0.26
PTPRN-204ENST00000423636 TSPY4P0CV99 314 aa16.7■□□□□ 0.26
PTPRN-204ENST00000423636 TSPY10P0CW01 314 aa16.7■□□□□ 0.26
PTPRN-204ENST00000423636 MYT1LQ9UL68 1186 aa16.7■□□□□ 0.26
PTPRN-204ENST00000423636 RAPGEF6Q8TEU7 1601 aa16.7■□□□□ 0.26
PTPRN-204ENST00000423636 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-204ENST00000423636 PTPRGP23470 1445 aa16.68■□□□□ 0.26
PTPRN-204ENST00000423636 TROQ12816 1431 aaPredicted RBP16.67■□□□□ 0.26
PTPRN-204ENST00000423636 NUP155O75694 1391 aa16.67■□□□□ 0.26
PTPRN-204ENST00000423636 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
PTPRN-204ENST00000423636 GPATCH8Q9UKJ3 1502 aaKnown RBP16.66■□□□□ 0.26
PTPRN-204ENST00000423636 CAMSAP2Q08AD1 1489 aa16.65■□□□□ 0.26
PTPRN-204ENST00000423636 MAGI1Q96QZ7 1491 aaPredicted RBP16.65■□□□□ 0.26
PTPRN-204ENST00000423636 ATP10BO94823 1461 aa16.64■□□□□ 0.25
PTPRN-204ENST00000423636 MIA2Q96PC5 1412 aa16.64■□□□□ 0.25
PTPRN-204ENST00000423636 DCAF11Q8TEB1 546 aa16.63■□□□□ 0.25
PTPRN-204ENST00000423636 TCOF1Q13428 1488 aaKnown RBP16.63■□□□□ 0.25
PTPRN-204ENST00000423636 ANKRD30BQ9BXX2 1392 aa16.61■□□□□ 0.25
PTPRN-204ENST00000423636 ERCC6L2Q5T890 1561 aa16.6■□□□□ 0.25
PTPRN-204ENST00000423636 NCOA1Q15788 1441 aa16.6■□□□□ 0.25
PTPRN-204ENST00000423636 KDM5BQ9UGL1 1544 aa16.59■□□□□ 0.25
PTPRN-204ENST00000423636 SALL2Q9Y467 1007 aaPredicted RBP16.58■□□□□ 0.25
PTPRN-204ENST00000423636 NUP160Q12769 1436 aa16.57■□□□□ 0.24
PTPRN-204ENST00000423636 MRS2Q9HD23 443 aa16.57■□□□□ 0.24
PTPRN-204ENST00000423636 ANKRD50Q9ULJ7 1429 aa16.56■□□□□ 0.24
PTPRN-204ENST00000423636 AKNAQ7Z591 1439 aa16.56■□□□□ 0.24
PTPRN-204ENST00000423636 ANKRD30AQ9BXX3 1397 aa16.56■□□□□ 0.24
PTPRN-204ENST00000423636 KIF7Q2M1P5 1343 aa16.55■□□□□ 0.24
PTPRN-204ENST00000423636 CARD11Q9BXL7 1154 aa16.54■□□□□ 0.24
PTPRN-204ENST00000423636 AFAP1Q8N556 730 aa16.53■□□□□ 0.24
PTPRN-204ENST00000423636 KIF15Q9NS87 1388 aa16.53■□□□□ 0.24
PTPRN-204ENST00000423636 C9orf84Q5VXU9 1444 aa16.52■□□□□ 0.23
PTPRN-204ENST00000423636 PZPP20742 1482 aa16.51■□□□□ 0.23
PTPRN-204ENST00000423636 ST20-MTHFSA0A0A6YYL1 179 aa16.51■□□□□ 0.23
PTPRN-204ENST00000423636 NBPF1Q3BBV0 1214 aa16.51■□□□□ 0.23
PTPRN-204ENST00000423636 DNMT1P26358 1616 aaKnown RBP16.51■□□□□ 0.23
PTPRN-204ENST00000423636 GCC2Q8IWJ2 1684 aa16.49■□□□□ 0.23
PTPRN-204ENST00000423636 NEFLP07196 543 aa16.48■□□□□ 0.23
PTPRN-204ENST00000423636 ROCK1Q13464 1354 aa16.48■□□□□ 0.23
PTPRN-204ENST00000423636 CCDC7Q96M83 1385 aa16.48■□□□□ 0.23
PTPRN-204ENST00000423636 PRKRIP1Q9H875 184 aaPredicted RBP16.48■□□□□ 0.23
PTPRN-204ENST00000423636 RPRD2Q5VT52 1461 aaKnown RBP16.47■□□□□ 0.23
PTPRN-204ENST00000423636 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
PTPRN-204ENST00000423636 USP47Q96K76 1375 aa16.45■□□□□ 0.22
PTPRN-204ENST00000423636 CHD1O14646 1710 aa16.44■□□□□ 0.22
PTPRN-204ENST00000423636 KIAA1107Q9UPP5 1409 aa16.43■□□□□ 0.22
PTPRN-204ENST00000423636 ARHGAP5Q13017 1502 aa16.42■□□□□ 0.22
PTPRN-204ENST00000423636 TEX14Q8IWB6 1497 aa16.42■□□□□ 0.22
PTPRN-204ENST00000423636 ABCA8O94911 1581 aa16.42■□□□□ 0.22
PTPRN-204ENST00000423636 ABCC10Q5T3U5 1492 aa16.41■□□□□ 0.22
PTPRN-204ENST00000423636 CDC42BPAQ5VT25 1732 aa16.41■□□□□ 0.22
PTPRN-204ENST00000423636 PELP1Q8IZL8 1130 aaKnown RBP16.39■□□□□ 0.21
PTPRN-204ENST00000423636 TSHZ2Q9NRE2 1034 aa16.39■□□□□ 0.21
PTPRN-204ENST00000423636 SYCP2Q9BX26 1530 aa16.39■□□□□ 0.21
PTPRN-204ENST00000423636 CC2D1BQ5T0F9 858 aaKnown RBP16.38■□□□□ 0.21
PTPRN-204ENST00000423636 CNTLNQ9NXG0 1405 aa16.38■□□□□ 0.21
PTPRN-204ENST00000423636 PLEKHH2Q8IVE3 1493 aa16.37■□□□□ 0.21
PTPRN-204ENST00000423636 CHGAP10645 457 aaKnown RBP16.37■□□□□ 0.21
PTPRN-204ENST00000423636 ROCK2O75116 1388 aaKnown RBP16.36■□□□□ 0.21
PTPRN-204ENST00000423636 NUTM2DQ5VT03 806 aaPredicted RBP16.35■□□□□ 0.21
PTPRN-204ENST00000423636 MBD5Q9P267 1494 aa16.35■□□□□ 0.21
PTPRN-204ENST00000423636 TTC37Q6PGP7 1564 aa16.34■□□□□ 0.21
PTPRN-204ENST00000423636 EFCAB2Q5VUJ9 269 aa16.33■□□□□ 0.2
PTPRN-204ENST00000423636 ITSN2Q9NZM3 1697 aa16.33■□□□□ 0.2
PTPRN-204ENST00000423636 KIF3BO15066 747 aa16.33■□□□□ 0.2
PTPRN-204ENST00000423636 TMC1Q8TDI8 760 aa16.32■□□□□ 0.2
PTPRN-204ENST00000423636 SAMD9LQ8IVG5 1584 aa16.32■□□□□ 0.2
PTPRN-204ENST00000423636 B4GALNT3Q6L9W6 998 aa16.31■□□□□ 0.2
PTPRN-204ENST00000423636 TRAPPC8Q9Y2L5 1435 aa16.31■□□□□ 0.2
PTPRN-204ENST00000423636 ARHGEF12Q9NZN5 1544 aa16.31■□□□□ 0.2
PTPRN-204ENST00000423636 SPAG9O60271 1321 aaKnown RBP16.3■□□□□ 0.2
PTPRN-204ENST00000423636 SPATA31E1Q6ZUB1 1445 aa16.3■□□□□ 0.2
PTPRN-204ENST00000423636 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.3■□□□□ 0.2
PTPRN-204ENST00000423636 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
PTPRN-204ENST00000423636 CCDC144AA2RUR9 1427 aa16.29■□□□□ 0.2
PTPRN-204ENST00000423636 CDC42BPBQ9Y5S2 1711 aa16.29■□□□□ 0.2
PTPRN-204ENST00000423636 GGT6Q6P531 493 aa16.27■□□□□ 0.2
PTPRN-204ENST00000423636 BCORL1Q5H9F3 1711 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms