RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RRP7BPQ9NSQ0 103 aa14.46□□□□□ -0.09
USP54-204ENST00000422491 THOC2Q8NI27 1593 aaKnown RBP14.46□□□□□ -0.09
USP54-204ENST00000422491 TCOF1Q13428 1488 aaKnown RBP14.46□□□□□ -0.09
USP54-204ENST00000422491 CADPSQ9ULU8 1353 aa14.46□□□□□ -0.09
USP54-204ENST00000422491 CUL7Q14999 1698 aa14.46□□□□□ -0.09
USP54-204ENST00000422491 SAMD9Q5K651 1589 aa14.45□□□□□ -0.1
USP54-204ENST00000422491 NBPF8Q3BBV2 869 aa14.45□□□□□ -0.1
USP54-204ENST00000422491 TEX14Q8IWB6 1497 aa14.44□□□□□ -0.1
USP54-204ENST00000422491 ABCA10Q8WWZ4 1543 aa14.44□□□□□ -0.1
USP54-204ENST00000422491 MPHOSPH9Q99550 1183 aa14.44□□□□□ -0.1
USP54-204ENST00000422491 DHX29Q7Z478 1369 aaKnown RBP14.44□□□□□ -0.1
USP54-204ENST00000422491 RPRD2Q5VT52 1461 aaKnown RBP14.43□□□□□ -0.1
USP54-204ENST00000422491 MAGI3Q5TCQ9 1506 aa14.41□□□□□ -0.1
USP54-204ENST00000422491 CHIC2Q9UKJ5 165 aa14.41□□□□□ -0.1
USP54-204ENST00000422491 RAD54L2Q9Y4B4 1467 aa14.41□□□□□ -0.1
USP54-204ENST00000422491 ANKRD30BQ9BXX2 1392 aa14.4□□□□□ -0.1
USP54-204ENST00000422491 USP35Q9P2H5 1018 aa14.4□□□□□ -0.1
USP54-204ENST00000422491 FOXD1Q16676 465 aa14.39□□□□□ -0.11
USP54-204ENST00000422491 MIA2Q96PC5 1412 aa14.38□□□□□ -0.11
USP54-204ENST00000422491 WASHC2CQ9Y4E1 1318 aa14.38□□□□□ -0.11
USP54-204ENST00000422491 DNMBPQ6XZF7 1577 aa14.36□□□□□ -0.11
USP54-204ENST00000422491 RTN4Q9NQC3 1192 aaKnown RBP14.36□□□□□ -0.11
USP54-204ENST00000422491 POLA1P09884 1462 aaPredicted RBP14.36□□□□□ -0.11
USP54-204ENST00000422491 NEFMP07197 916 aa14.36□□□□□ -0.11
USP54-204ENST00000422491 TCERG1O14776 1098 aaKnown RBP14.35□□□□□ -0.11
USP54-204ENST00000422491 PNISRQ8TF01 805 aaKnown RBP14.35□□□□□ -0.11
USP54-204ENST00000422491 BCORL1Q5H9F3 1711 aa14.34□□□□□ -0.11
USP54-204ENST00000422491 NPM2Q86SE8 214 aaKnown RBP14.34□□□□□ -0.11
USP54-204ENST00000422491 LAS1LQ9Y4W2 734 aaKnown RBP14.34□□□□□ -0.11
USP54-204ENST00000422491 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.11
USP54-204ENST00000422491 PDE4AP27815 886 aa14.33□□□□□ -0.12
USP54-204ENST00000422491 KIF21AQ7Z4S6 1674 aa14.33□□□□□ -0.12
USP54-204ENST00000422491 BACH2Q9BYV9 841 aa14.32□□□□□ -0.12
USP54-204ENST00000422491 TOPBP1Q92547 1522 aa14.31□□□□□ -0.12
USP54-204ENST00000422491 RRP1P56182 461 aaKnown RBP14.31□□□□□ -0.12
USP54-204ENST00000422491 LRPPRCP42704 1394 aaKnown RBP14.31□□□□□ -0.12
USP54-204ENST00000422491 MBD5Q9P267 1494 aa14.31□□□□□ -0.12
USP54-204ENST00000422491 PPM1GO15355 546 aaPredicted RBP14.3□□□□□ -0.12
USP54-204ENST00000422491 MS4A1P11836 297 aa14.3□□□□□ -0.12
USP54-204ENST00000422491 EXOC6Q8TAG9 804 aa14.3□□□□□ -0.12
USP54-204ENST00000422491 SENP3-EIF4A1A0A087X0R7 540 aa14.29□□□□□ -0.12
USP54-204ENST00000422491 ROCK1Q13464 1354 aa14.29□□□□□ -0.12
USP54-204ENST00000422491 ARID4BQ4LE39 1312 aaPredicted RBP14.28□□□□□ -0.12
USP54-204ENST00000422491 USP47Q96K76 1375 aa14.28□□□□□ -0.12
USP54-204ENST00000422491 CNGB1Q14028 1251 aaPredicted RBP14.28□□□□□ -0.12
USP54-204ENST00000422491 KDM5CP41229 1560 aa14.27□□□□□ -0.13
USP54-204ENST00000422491 TMC1Q8TDI8 760 aa14.27□□□□□ -0.13
USP54-204ENST00000422491 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.27□□□□□ -0.13
USP54-204ENST00000422491 DAPK1P53355 1430 aa14.25□□□□□ -0.13
USP54-204ENST00000422491 EPRSP07814 1512 aaKnown RBP14.24□□□□□ -0.13
USP54-204ENST00000422491 KIF14Q15058 1648 aa14.24□□□□□ -0.13
USP54-204ENST00000422491 ROCK2O75116 1388 aaKnown RBP14.24□□□□□ -0.13
USP54-204ENST00000422491 NESP48681 1621 aa14.24□□□□□ -0.13
USP54-204ENST00000422491 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
USP54-204ENST00000422491 RCAN3Q9UKA8 241 aa14.24□□□□□ -0.13
USP54-204ENST00000422491 BRD4O60885 1362 aaPredicted RBP14.23□□□□□ -0.13
USP54-204ENST00000422491 DNMT1P26358 1616 aaKnown RBP14.23□□□□□ -0.13
USP54-204ENST00000422491 POLR3GLQ9BT43 218 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 BRPF3Q9ULD4 1205 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 KIF15Q9NS87 1388 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 GSE1Q14687 1217 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 ABCC5O15440 1437 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 PZPP20742 1482 aa14.22□□□□□ -0.13
USP54-204ENST00000422491 UBE2Q2Q8WVN8 375 aa14.21□□□□□ -0.14
USP54-204ENST00000422491 DDRGK1Q96HY6 314 aa14.2□□□□□ -0.14
USP54-204ENST00000422491 CDK13Q14004 1512 aaKnown RBP14.2□□□□□ -0.14
USP54-204ENST00000422491 KTN1Q86UP2 1357 aaKnown RBP14.2□□□□□ -0.14
USP54-204ENST00000422491 MYBBP1AQ9BQG0 1328 aaKnown RBP14.2□□□□□ -0.14
USP54-204ENST00000422491 LAMC3Q9Y6N6 1575 aa14.18□□□□□ -0.14
USP54-204ENST00000422491 NFKBIBQ15653 356 aa14.18□□□□□ -0.14
USP54-204ENST00000422491 PDE3BQ13370 1112 aa14.17□□□□□ -0.14
USP54-204ENST00000422491 E9PCH4 1651 aa14.17□□□□□ -0.14
USP54-204ENST00000422491 RALGAPBQ86X10 1494 aa14.17□□□□□ -0.14
USP54-204ENST00000422491 RALBP1Q15311 655 aa14.17□□□□□ -0.14
USP54-204ENST00000422491 WDR62O43379 1518 aa14.16□□□□□ -0.14
USP54-204ENST00000422491 GAPVD1Q14C86 1478 aa14.16□□□□□ -0.14
USP54-204ENST00000422491 UHRF1BP1Q6BDS2 1440 aa14.16□□□□□ -0.14
USP54-204ENST00000422491 TDRD9Q8NDG6 1382 aaKnown RBP14.16□□□□□ -0.14
USP54-204ENST00000422491 KIAA1107Q9UPP5 1409 aa14.15□□□□□ -0.14
USP54-204ENST00000422491 ZNF326Q5BKZ1 582 aaKnown RBP14.14□□□□□ -0.15
USP54-204ENST00000422491 FRAT1Q92837 279 aaPredicted RBP14.14□□□□□ -0.15
USP54-204ENST00000422491 SKAP1Q86WV1 359 aa14.14□□□□□ -0.15
USP54-204ENST00000422491 ZNF644Q9H582 1327 aaPredicted RBP14.13□□□□□ -0.15
USP54-204ENST00000422491 URB2Q14146 1524 aaKnown RBP14.12□□□□□ -0.15
USP54-204ENST00000422491 CDCA7LQ96GN5 454 aa14.11□□□□□ -0.15
USP54-204ENST00000422491 PARD3Q8TEW0 1356 aa14.1□□□□□ -0.15
USP54-204ENST00000422491 PLIN1O60240 522 aa14.1□□□□□ -0.15
USP54-204ENST00000422491 NLRP13Q86W25 1043 aa14.1□□□□□ -0.15
USP54-204ENST00000422491 CRBNQ96SW2 442 aa14.1□□□□□ -0.15
USP54-204ENST00000422491 DNAJC5BQ9UF47 199 aa14.1□□□□□ -0.15
USP54-204ENST00000422491 SLC4A3P48751 1232 aa14.09□□□□□ -0.15
USP54-204ENST00000422491 CARD11Q9BXL7 1154 aa14.09□□□□□ -0.15
USP54-204ENST00000422491 ARHGEF12Q9NZN5 1544 aa14.09□□□□□ -0.15
USP54-204ENST00000422491 KDM2BQ8NHM5 1336 aa14.09□□□□□ -0.15
USP54-204ENST00000422491 IQGAP2Q13576 1575 aa14.09□□□□□ -0.15
USP54-204ENST00000422491 ST20-MTHFSA0A0A6YYL1 179 aa14.08□□□□□ -0.16
USP54-204ENST00000422491 ADGBQ8N7X0 1667 aa14.08□□□□□ -0.16
USP54-204ENST00000422491 INSRP06213 1382 aa14.07□□□□□ -0.16
USP54-204ENST00000422491 ZMYM4Q5VZL5 1548 aa14.07□□□□□ -0.16
USP54-204ENST00000422491 ARID3CA6NKF2 412 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms