RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 EIF4G3O43432 1585 aaKnown RBP13.4□□□□□ -0.26
CMSS1-201ENST00000421999 UACAQ9BZF9 1416 aa13.39□□□□□ -0.27
CMSS1-201ENST00000421999 EPRSP07814 1512 aaKnown RBP13.38□□□□□ -0.27
CMSS1-201ENST00000421999 ERICH6Q7L0X2 663 aa13.38□□□□□ -0.27
CMSS1-201ENST00000421999 TIAM1Q13009 1591 aa13.37□□□□□ -0.27
CMSS1-201ENST00000421999 KANK1Q14678 1352 aa13.37□□□□□ -0.27
CMSS1-201ENST00000421999 PCF11O94913 1555 aaKnown RBP13.37□□□□□ -0.27
CMSS1-201ENST00000421999 EIF4G2P78344 907 aaKnown RBP eCLIP13.37□□□□□ -0.271e-6■■■■■ 40.1
CMSS1-201ENST00000421999 TROQ12816 1431 aaPredicted RBP13.37□□□□□ -0.27
CMSS1-201ENST00000421999 ADAMTS12P58397 1594 aa13.36□□□□□ -0.27
CMSS1-201ENST00000421999 AFAP1Q8N556 730 aa13.35□□□□□ -0.27
CMSS1-201ENST00000421999 DCAF11Q8TEB1 546 aa13.35□□□□□ -0.27
CMSS1-201ENST00000421999 HECW1Q76N89 1606 aa13.35□□□□□ -0.27
CMSS1-201ENST00000421999 TARBP1Q13395 1621 aaKnown RBP13.33□□□□□ -0.28
CMSS1-201ENST00000421999 ABCA5Q8WWZ7 1642 aa13.33□□□□□ -0.28
CMSS1-201ENST00000421999 CARD11Q9BXL7 1154 aa13.31□□□□□ -0.28
CMSS1-201ENST00000421999 DHX57Q6P158 1386 aaKnown RBP13.31□□□□□ -0.28
CMSS1-201ENST00000421999 RRBP1Q9P2E9 1410 aaKnown RBP13.31□□□□□ -0.28
CMSS1-201ENST00000421999 EHBP1L1Q8N3D4 1523 aa13.31□□□□□ -0.28
CMSS1-201ENST00000421999 ARHGAP5Q13017 1502 aa13.29□□□□□ -0.28
CMSS1-201ENST00000421999 ZBTB7CA1YPR0 619 aa13.29□□□□□ -0.28
CMSS1-201ENST00000421999 TMC1Q8TDI8 760 aa13.29□□□□□ -0.28
CMSS1-201ENST00000421999 BCL11AQ9H165 835 aa13.29□□□□□ -0.28
CMSS1-201ENST00000421999 WASHC2CQ9Y4E1 1318 aa13.29□□□□□ -0.28
CMSS1-201ENST00000421999 TIMELESSQ9UNS1 1208 aa13.27□□□□□ -0.28
CMSS1-201ENST00000421999 KIF15Q9NS87 1388 aa13.27□□□□□ -0.28
CMSS1-201ENST00000421999 A0A0G2JS52 829 aa13.27□□□□□ -0.28
CMSS1-201ENST00000421999 PBRM1Q86U86 1689 aa13.26□□□□□ -0.29
CMSS1-201ENST00000421999 NUP160Q12769 1436 aa13.26□□□□□ -0.29
CMSS1-201ENST00000421999 L3MBTL2Q969R5 705 aa13.25□□□□□ -0.29
CMSS1-201ENST00000421999 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
CMSS1-201ENST00000421999 HAP1P54257 671 aaPredicted RBP13.25□□□□□ -0.29
CMSS1-201ENST00000421999 MIA2Q96PC5 1412 aa13.24□□□□□ -0.29
CMSS1-201ENST00000421999 CTTNBP2Q8WZ74 1663 aa13.24□□□□□ -0.29
CMSS1-201ENST00000421999 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
CMSS1-201ENST00000421999 LMOD2Q6P5Q4 547 aa13.24□□□□□ -0.29
CMSS1-201ENST00000421999 UGGT2Q9NYU1 1516 aa13.24□□□□□ -0.29
CMSS1-201ENST00000421999 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
CMSS1-201ENST00000421999 POGKQ9P215 609 aa13.23□□□□□ -0.29
CMSS1-201ENST00000421999 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
CMSS1-201ENST00000421999 RAPGEF3O95398 923 aa13.22□□□□□ -0.29
CMSS1-201ENST00000421999 ANKRD50Q9ULJ7 1429 aa13.22□□□□□ -0.29
CMSS1-201ENST00000421999 MIER1Q8N108 512 aa13.22□□□□□ -0.29
CMSS1-201ENST00000421999 SUPT6HQ7KZ85 1726 aaKnown RBP13.22□□□□□ -0.29
CMSS1-201ENST00000421999 MAP3K1Q13233 1512 aa13.21□□□□□ -0.3
CMSS1-201ENST00000421999 ATP10BO94823 1461 aa13.21□□□□□ -0.3
CMSS1-201ENST00000421999 NUP153P49790 1475 aaKnown RBP13.21□□□□□ -0.3
CMSS1-201ENST00000421999 DISP1Q96F81 1524 aa13.19□□□□□ -0.3
CMSS1-201ENST00000421999 KIAA0556O60303 1618 aa13.19□□□□□ -0.3
CMSS1-201ENST00000421999 FAM9BQ8IZU0 186 aa13.19□□□□□ -0.3
CMSS1-201ENST00000421999 ZBTB47Q9UFB7 747 aaPredicted RBP13.19□□□□□ -0.3
CMSS1-201ENST00000421999 SCAPERQ9BY12 1400 aa13.19□□□□□ -0.3
CMSS1-201ENST00000421999 DAXXQ9UER7 740 aaPredicted RBP13.19□□□□□ -0.3
CMSS1-201ENST00000421999 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
CMSS1-201ENST00000421999 NUTM2DQ5VT03 806 aaPredicted RBP13.18□□□□□ -0.3
CMSS1-201ENST00000421999 C9orf84Q5VXU9 1444 aa13.18□□□□□ -0.3
CMSS1-201ENST00000421999 CEP170Q5SW79 1584 aa13.17□□□□□ -0.3
CMSS1-201ENST00000421999 RAPGEF6Q8TEU7 1601 aa13.16□□□□□ -0.3
CMSS1-201ENST00000421999 DAPK1P53355 1430 aa13.16□□□□□ -0.3
CMSS1-201ENST00000421999 HSPA5P11021 654 aaKnown RBP13.16□□□□□ -0.3
CMSS1-201ENST00000421999 SAFB2Q14151 953 aaKnown RBP eCLIP13.15□□□□□ -0.3
CMSS1-201ENST00000421999 WDR97A6NE52 1622 aa13.15□□□□□ -0.3
CMSS1-201ENST00000421999 CD109Q6YHK3 1445 aa13.15□□□□□ -0.3
CMSS1-201ENST00000421999 CCDC144AA2RUR9 1427 aa13.14□□□□□ -0.31
CMSS1-201ENST00000421999 PPM1GO15355 546 aaPredicted RBP13.14□□□□□ -0.31
CMSS1-201ENST00000421999 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.13□□□□□ -0.31
CMSS1-201ENST00000421999 STK26Q9P289 416 aa13.13□□□□□ -0.31
CMSS1-201ENST00000421999 HFM1A2PYH4 1435 aa13.13□□□□□ -0.31
CMSS1-201ENST00000421999 PLEKHH2Q8IVE3 1493 aa13.12□□□□□ -0.31
CMSS1-201ENST00000421999 WDR43Q15061 677 aaKnown RBP eCLIP13.12□□□□□ -0.31
CMSS1-201ENST00000421999 KIF14Q15058 1648 aa13.11□□□□□ -0.31
CMSS1-201ENST00000421999 MRS2Q9HD23 443 aa13.11□□□□□ -0.31
CMSS1-201ENST00000421999 CAMSAP2Q08AD1 1489 aa13.11□□□□□ -0.31
CMSS1-201ENST00000421999 ABCC5O15440 1437 aa13.1□□□□□ -0.31
CMSS1-201ENST00000421999 CDCA8Q53HL2 280 aa13.1□□□□□ -0.31
CMSS1-201ENST00000421999 NAIPQ13075 1403 aa13.1□□□□□ -0.31
CMSS1-201ENST00000421999 HNRNPUQ00839 825 aaKnown RBP eCLIP13.1□□□□□ -0.31
CMSS1-201ENST00000421999 GPATCH8Q9UKJ3 1502 aaKnown RBP13.1□□□□□ -0.31
CMSS1-201ENST00000421999 ROCK2O75116 1388 aaKnown RBP13.1□□□□□ -0.31
CMSS1-201ENST00000421999 PTPN23Q9H3S7 1636 aa13.09□□□□□ -0.31
CMSS1-201ENST00000421999 ASXL2Q76L83 1435 aa13.09□□□□□ -0.31
CMSS1-201ENST00000421999 KNSTRNQ9Y448 316 aa13.07□□□□□ -0.32
CMSS1-201ENST00000421999 TMF1P82094 1093 aa13.07□□□□□ -0.32
CMSS1-201ENST00000421999 CCDC141Q6ZP82 1450 aa13.06□□□□□ -0.32
CMSS1-201ENST00000421999 NPM2Q86SE8 214 aaKnown RBP13.06□□□□□ -0.32
CMSS1-201ENST00000421999 SAMD9Q5K651 1589 aa13.06□□□□□ -0.32
CMSS1-201ENST00000421999 SRPK2P78362 688 aaKnown RBP13.06□□□□□ -0.32
CMSS1-201ENST00000421999 ADGRL1O94910 1474 aa13.05□□□□□ -0.32
CMSS1-201ENST00000421999 SOX12O15370 315 aa13.05□□□□□ -0.32
CMSS1-201ENST00000421999 FANCAO15360 1455 aa13.04□□□□□ -0.32
CMSS1-201ENST00000421999 ROCK1Q13464 1354 aa13.04□□□□□ -0.32
CMSS1-201ENST00000421999 TNNT2P45379 298 aaPredicted RBP13.04□□□□□ -0.32
CMSS1-201ENST00000421999 EID1Q9Y6B2 187 aa13.03□□□□□ -0.32
CMSS1-201ENST00000421999 NCOA1Q15788 1441 aa13.03□□□□□ -0.32
CMSS1-201ENST00000421999 PTPRKQ15262 1439 aa13.02□□□□□ -0.32
CMSS1-201ENST00000421999 SENP3-EIF4A1A0A087X0R7 540 aa13.02□□□□□ -0.32
CMSS1-201ENST00000421999 ABCC2Q92887 1545 aa13.02□□□□□ -0.32
CMSS1-201ENST00000421999 TRAK1Q9UPV9 953 aa13.02□□□□□ -0.33
CMSS1-201ENST00000421999 WDR7Q9Y4E6 1490 aa13.01□□□□□ -0.33
CMSS1-201ENST00000421999 ST20-MTHFSA0A0A6YYL1 179 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms