RNA–Protein interactions for RNA: ENST00000419180.6

NPIPB3-201, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 3

Gene NPIPB3, Length 910 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-201ENST00000419180 NUP153P49790 1475 aaKnown RBP13.29□□□□□ -0.28
NPIPB3-201ENST00000419180 PRXQ9BXM0 1461 aa13.29□□□□□ -0.28
NPIPB3-201ENST00000419180 LTBP4Q8N2S1 1624 aa13.28□□□□□ -0.28
NPIPB3-201ENST00000419180 MLECQ14165 292 aa13.28□□□□□ -0.28
NPIPB3-201ENST00000419180 DMRT2Q9Y5R5 561 aa13.28□□□□□ -0.28
NPIPB3-201ENST00000419180 IQSEC2Q5JU85 1478 aa13.28□□□□□ -0.28
NPIPB3-201ENST00000419180 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.27□□□□□ -0.29
NPIPB3-201ENST00000419180 PTPRTO14522 1441 aa13.26□□□□□ -0.29
NPIPB3-201ENST00000419180 UHRF1BP1Q6BDS2 1440 aa13.26□□□□□ -0.29
NPIPB3-201ENST00000419180 P3H3Q8IVL6 736 aa13.26□□□□□ -0.29
NPIPB3-201ENST00000419180 FAM9AQ8IZU1 332 aaPredicted RBP13.25□□□□□ -0.29
NPIPB3-201ENST00000419180 C9orf84Q5VXU9 1444 aa13.23□□□□□ -0.29
NPIPB3-201ENST00000419180 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.23□□□□□ -0.29
NPIPB3-201ENST00000419180 HNRNPUL2Q1KMD3 747 aaKnown RBP13.23□□□□□ -0.29
NPIPB3-201ENST00000419180 CEBPAP49715 358 aaPredicted RBP13.22□□□□□ -0.29
NPIPB3-201ENST00000419180 ATP10AO60312 1499 aa13.22□□□□□ -0.29
NPIPB3-201ENST00000419180 MYT1Q01538 1121 aa13.19□□□□□ -0.3
NPIPB3-201ENST00000419180 SCAPERQ9BY12 1400 aa13.19□□□□□ -0.3
NPIPB3-201ENST00000419180 C3P01024 1663 aa13.18□□□□□ -0.3
NPIPB3-201ENST00000419180 SETD1BQ9UPS6 1966 aaKnown RBP13.18□□□□□ -0.3
NPIPB3-201ENST00000419180 NCOA1Q15788 1441 aa13.16□□□□□ -0.3
NPIPB3-201ENST00000419180 PLEKHD1A6NEE1 506 aa13.16□□□□□ -0.3
NPIPB3-201ENST00000419180 PIAS4Q8N2W9 510 aaPredicted RBP13.15□□□□□ -0.3
NPIPB3-201ENST00000419180 KDM5CP41229 1560 aa13.14□□□□□ -0.31
NPIPB3-201ENST00000419180 REREQ9P2R6 1566 aa13.14□□□□□ -0.31
NPIPB3-201ENST00000419180 DIP2CQ9Y2E4 1556 aa13.14□□□□□ -0.31
NPIPB3-201ENST00000419180 PLCH2O75038 1416 aa13.13□□□□□ -0.31
NPIPB3-201ENST00000419180 MED1Q15648 1581 aaPredicted RBP13.13□□□□□ -0.31
NPIPB3-201ENST00000419180 MSH5O43196 834 aa13.12□□□□□ -0.31
NPIPB3-201ENST00000419180 PPP6R1Q9UPN7 881 aa13.12□□□□□ -0.31
NPIPB3-201ENST00000419180 MYO5CQ9NQX4 1742 aa13.12□□□□□ -0.31
NPIPB3-201ENST00000419180 ZNF518AQ6AHZ1 1483 aa13.11□□□□□ -0.31
NPIPB3-201ENST00000419180 ADRA2BP18089 450 aa13.11□□□□□ -0.31
NPIPB3-201ENST00000419180 CDK13Q14004 1512 aaKnown RBP13.11□□□□□ -0.31
NPIPB3-201ENST00000419180 ABCA6Q8N139 1617 aa13.1□□□□□ -0.31
NPIPB3-201ENST00000419180 TRAPPC8Q9Y2L5 1435 aa13.1□□□□□ -0.31
NPIPB3-201ENST00000419180 CAMSAP1Q5T5Y3 1602 aa13.1□□□□□ -0.31
NPIPB3-201ENST00000419180 AGLP35573 1532 aa13.08□□□□□ -0.31
NPIPB3-201ENST00000419180 UBAP1LF5GYI3 381 aa13.08□□□□□ -0.32
NPIPB3-201ENST00000419180 DAXXQ9UER7 740 aaPredicted RBP13.08□□□□□ -0.32
NPIPB3-201ENST00000419180 ZNF335Q9H4Z2 1342 aaPredicted RBP13.07□□□□□ -0.32
NPIPB3-201ENST00000419180 KIF14Q15058 1648 aa13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 EFCAB2Q5VUJ9 269 aa13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 MROH2AA6NES4 1674 aa13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 ZNF142P52746 1687 aaPredicted RBP13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 CNTLNQ9NXG0 1405 aa13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 MLH3Q9UHC1 1453 aa13.04□□□□□ -0.32
NPIPB3-201ENST00000419180 NPATQ14207 1427 aa13.03□□□□□ -0.32
NPIPB3-201ENST00000419180 ARHGAP5Q13017 1502 aa13.03□□□□□ -0.32
NPIPB3-201ENST00000419180 MYO3AQ8NEV4 1616 aa13.02□□□□□ -0.32
NPIPB3-201ENST00000419180 PLA2R1Q13018 1463 aa13.02□□□□□ -0.33
NPIPB3-201ENST00000419180 AFAP1Q8N556 730 aa13.01□□□□□ -0.33
NPIPB3-201ENST00000419180 TCOF1Q13428 1488 aaKnown RBP13.01□□□□□ -0.33
NPIPB3-201ENST00000419180 NCKAP5LQ9HCH0 1330 aa13□□□□□ -0.33
NPIPB3-201ENST00000419180 RANGAP1P46060 587 aaPredicted RBP13□□□□□ -0.33
NPIPB3-201ENST00000419180 ESF1Q9H501 851 aaKnown RBP13□□□□□ -0.33
NPIPB3-201ENST00000419180 HSPA1LP34931 641 aa12.99□□□□□ -0.33
NPIPB3-201ENST00000419180 CEP170BQ9Y4F5 1589 aaPredicted RBP12.98□□□□□ -0.33
NPIPB3-201ENST00000419180 ABCC1P33527 1531 aa12.98□□□□□ -0.33
NPIPB3-201ENST00000419180 SUPT6HQ7KZ85 1726 aaKnown RBP12.98□□□□□ -0.33
NPIPB3-201ENST00000419180 ITSN2Q9NZM3 1697 aa12.98□□□□□ -0.33
NPIPB3-201ENST00000419180 KIDINS220Q9ULH0 1771 aa12.97□□□□□ -0.33
NPIPB3-201ENST00000419180 MYT1LQ9UL68 1186 aa12.97□□□□□ -0.33
NPIPB3-201ENST00000419180 CDC42BPBQ9Y5S2 1711 aa12.96□□□□□ -0.33
NPIPB3-201ENST00000419180 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
NPIPB3-201ENST00000419180 PREX2Q70Z35 1606 aa12.95□□□□□ -0.34
NPIPB3-201ENST00000419180 PKD2Q13563 968 aa12.95□□□□□ -0.34
NPIPB3-201ENST00000419180 TROQ12816 1431 aaPredicted RBP12.95□□□□□ -0.34
NPIPB3-201ENST00000419180 CPS1P31327 1500 aa12.93□□□□□ -0.34
NPIPB3-201ENST00000419180 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
NPIPB3-201ENST00000419180 CLTCQ00610 1675 aaKnown RBP12.93□□□□□ -0.34
NPIPB3-201ENST00000419180 ZMYM3Q14202 1370 aa12.93□□□□□ -0.34
NPIPB3-201ENST00000419180 PIP4K2BP78356 416 aa12.92□□□□□ -0.34
NPIPB3-201ENST00000419180 ALKQ9UM73 1620 aa12.91□□□□□ -0.34
NPIPB3-201ENST00000419180 CLIP1P30622 1438 aa12.91□□□□□ -0.34
NPIPB3-201ENST00000419180 PTPRKQ15262 1439 aa12.91□□□□□ -0.34
NPIPB3-201ENST00000419180 POLR1AO95602 1720 aaPredicted RBP12.91□□□□□ -0.34
NPIPB3-201ENST00000419180 NEURL4Q96JN8 1562 aa12.9□□□□□ -0.34
NPIPB3-201ENST00000419180 LRRIQ1Q96JM4 1722 aa12.9□□□□□ -0.34
NPIPB3-201ENST00000419180 PLXNC1O60486 1568 aa12.9□□□□□ -0.35
NPIPB3-201ENST00000419180 SAMD9LQ8IVG5 1584 aa12.9□□□□□ -0.35
NPIPB3-201ENST00000419180 TOM1O60784 492 aa12.89□□□□□ -0.35
NPIPB3-201ENST00000419180 POTEDQ86YR6 584 aa12.89□□□□□ -0.35
NPIPB3-201ENST00000419180 CDK11AQ9UQ88 783 aaPredicted RBP12.89□□□□□ -0.35
NPIPB3-201ENST00000419180 FMN1Q68DA7 1419 aa12.88□□□□□ -0.35
NPIPB3-201ENST00000419180 SHANK2Q9UPX8 1470 aa12.88□□□□□ -0.35
NPIPB3-201ENST00000419180 DNMT1P26358 1616 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-201ENST00000419180 EEA1Q15075 1411 aa12.87□□□□□ -0.35
NPIPB3-201ENST00000419180 A2ML1A8K2U0 1454 aa12.86□□□□□ -0.35
NPIPB3-201ENST00000419180 VWDEQ8N2E2 1590 aa12.86□□□□□ -0.35
NPIPB3-201ENST00000419180 CDC42BPAQ5VT25 1732 aa12.85□□□□□ -0.35
NPIPB3-201ENST00000419180 ATP1B4Q9UN42 357 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-201ENST00000419180 INO80Q9ULG1 1556 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-201ENST00000419180 ATP7AQ04656 1500 aa12.83□□□□□ -0.35
NPIPB3-201ENST00000419180 SYCP2Q9BX26 1530 aa12.83□□□□□ -0.35
NPIPB3-201ENST00000419180 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
NPIPB3-201ENST00000419180 ARHGAP35Q9NRY4 1499 aa12.83□□□□□ -0.36
NPIPB3-201ENST00000419180 RNF17Q9BXT8 1623 aaKnown RBP12.81□□□□□ -0.36
NPIPB3-201ENST00000419180 A2MP01023 1474 aa12.8□□□□□ -0.36
NPIPB3-201ENST00000419180 RGS17Q9UGC6 210 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms