RNA–Protein interactions for RNA: ENST00000418310.5

LIMK1-202, Transcript of LIM domain kinase 1, humanhuman

TSL 5 BASIC

Gene LIMK1, Length 3,360 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-202ENST00000418310 CFDP1Q9UEE9 299 aaPredicted RBP16.41■□□□□ 0.22
LIMK1-202ENST00000418310 HECW1Q76N89 1606 aa16.41■□□□□ 0.22
LIMK1-202ENST00000418310 TARBP1Q13395 1621 aaKnown RBP16.41■□□□□ 0.22
LIMK1-202ENST00000418310 PRKRIP1Q9H875 184 aaPredicted RBP16.4■□□□□ 0.22
LIMK1-202ENST00000418310 CHMP7Q8WUX9 453 aaPredicted RBP16.38■□□□□ 0.21
LIMK1-202ENST00000418310 PRG4Q92954 1404 aaPredicted RBP16.37■□□□□ 0.21
LIMK1-202ENST00000418310 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
LIMK1-202ENST00000418310 CDK11AQ9UQ88 783 aaPredicted RBP16.37■□□□□ 0.21
LIMK1-202ENST00000418310 KDM2AQ9Y2K7 1162 aa16.37■□□□□ 0.21
LIMK1-202ENST00000418310 ARHGEF11O15085 1522 aa16.37■□□□□ 0.21
LIMK1-202ENST00000418310 DAPK1P53355 1430 aa16.37■□□□□ 0.21
LIMK1-202ENST00000418310 KIF7Q2M1P5 1343 aa16.37■□□□□ 0.21
LIMK1-202ENST00000418310 B4GALNT3Q6L9W6 998 aa16.36■□□□□ 0.21
LIMK1-202ENST00000418310 TCOF1Q13428 1488 aaKnown RBP16.36■□□□□ 0.21
LIMK1-202ENST00000418310 CNTLNQ9NXG0 1405 aa16.36■□□□□ 0.21
LIMK1-202ENST00000418310 ABCC5O15440 1437 aa16.36■□□□□ 0.21
LIMK1-202ENST00000418310 PKD2Q13563 968 aa16.35■□□□□ 0.21
LIMK1-202ENST00000418310 PBRM1Q86U86 1689 aa16.35■□□□□ 0.21
LIMK1-202ENST00000418310 WDR62O43379 1518 aa16.34■□□□□ 0.21
LIMK1-202ENST00000418310 ANKRD30BQ9BXX2 1392 aa16.33■□□□□ 0.21
LIMK1-202ENST00000418310 MIA2Q96PC5 1412 aa16.33■□□□□ 0.21
LIMK1-202ENST00000418310 ADAMTS12P58397 1594 aa16.33■□□□□ 0.2
LIMK1-202ENST00000418310 NUP153P49790 1475 aaKnown RBP16.3■□□□□ 0.2
LIMK1-202ENST00000418310 MRC2Q9UBG0 1479 aa16.3■□□□□ 0.2
LIMK1-202ENST00000418310 PLB1Q6P1J6 1458 aa16.3■□□□□ 0.2
LIMK1-202ENST00000418310 GCC2Q8IWJ2 1684 aa16.3■□□□□ 0.2
LIMK1-202ENST00000418310 SALL2Q9Y467 1007 aaPredicted RBP16.29■□□□□ 0.2
LIMK1-202ENST00000418310 NCOA1Q15788 1441 aa16.28■□□□□ 0.2
LIMK1-202ENST00000418310 DISP1Q96F81 1524 aa16.27■□□□□ 0.2
LIMK1-202ENST00000418310 RPRD2Q5VT52 1461 aaKnown RBP16.27■□□□□ 0.19
LIMK1-202ENST00000418310 MSH5O43196 834 aa16.26■□□□□ 0.19
LIMK1-202ENST00000418310 AKNAQ7Z591 1439 aa16.25■□□□□ 0.19
LIMK1-202ENST00000418310 KIAA0586Q9BVV6 1533 aa16.24■□□□□ 0.19
LIMK1-202ENST00000418310 ERICH6Q7L0X2 663 aa16.24■□□□□ 0.19
LIMK1-202ENST00000418310 HNRNPMP52272 730 aaKnown RBP eCLIP16.23■□□□□ 0.19
LIMK1-202ENST00000418310 JPH4Q96JJ6 628 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 TEX14Q8IWB6 1497 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 USP47Q96K76 1375 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 CARD11Q9BXL7 1154 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 ERCC6Q03468 1493 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 KIAA0556O60303 1618 aa16.23■□□□□ 0.19
LIMK1-202ENST00000418310 RGL3Q3MIN7 710 aa16.22■□□□□ 0.19
LIMK1-202ENST00000418310 CAMSAP2Q08AD1 1489 aa16.22■□□□□ 0.19
LIMK1-202ENST00000418310 NUP155O75694 1391 aa16.22■□□□□ 0.19
LIMK1-202ENST00000418310 PLEKHD1A6NEE1 506 aa16.22■□□□□ 0.19
LIMK1-202ENST00000418310 PPP4R2Q9NY27 417 aa16.22■□□□□ 0.19
LIMK1-202ENST00000418310 GRIN2AQ12879 1464 aa16.21■□□□□ 0.19
LIMK1-202ENST00000418310 ROCK1Q13464 1354 aa16.21■□□□□ 0.19
LIMK1-202ENST00000418310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.21■□□□□ 0.19
LIMK1-202ENST00000418310 DCAF11Q8TEB1 546 aa16.21■□□□□ 0.18
LIMK1-202ENST00000418310 TROQ12816 1431 aaPredicted RBP16.2■□□□□ 0.18
LIMK1-202ENST00000418310 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
LIMK1-202ENST00000418310 ZBED9Q6R2W3 1325 aa16.19■□□□□ 0.18
LIMK1-202ENST00000418310 PZPP20742 1482 aa16.19■□□□□ 0.18
LIMK1-202ENST00000418310 RAPGEF6Q8TEU7 1601 aa16.19■□□□□ 0.18
LIMK1-202ENST00000418310 TMC1Q8TDI8 760 aa16.19■□□□□ 0.18
LIMK1-202ENST00000418310 TSPY4P0CV99 314 aa16.18■□□□□ 0.18
LIMK1-202ENST00000418310 TSPY10P0CW01 314 aa16.18■□□□□ 0.18
LIMK1-202ENST00000418310 DNMT1P26358 1616 aaKnown RBP16.18■□□□□ 0.18
LIMK1-202ENST00000418310 ST20-MTHFSA0A0A6YYL1 179 aa16.17■□□□□ 0.18
LIMK1-202ENST00000418310 KIF14Q15058 1648 aa16.17■□□□□ 0.18
LIMK1-202ENST00000418310 GPATCH8Q9UKJ3 1502 aaKnown RBP16.17■□□□□ 0.18
LIMK1-202ENST00000418310 ANKRD30AQ9BXX3 1397 aa16.17■□□□□ 0.18
LIMK1-202ENST00000418310 SPATA31E1Q6ZUB1 1445 aa16.16■□□□□ 0.18
LIMK1-202ENST00000418310 ANKRD50Q9ULJ7 1429 aa16.16■□□□□ 0.18
LIMK1-202ENST00000418310 KIAA1107Q9UPP5 1409 aa16.15■□□□□ 0.18
LIMK1-202ENST00000418310 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
LIMK1-202ENST00000418310 DHX29Q7Z478 1369 aaKnown RBP16.11■□□□□ 0.17
LIMK1-202ENST00000418310 CCDC136Q96JN2 1154 aa16.1■□□□□ 0.17
LIMK1-202ENST00000418310 CARMIL2Q6F5E8 1435 aa16.1■□□□□ 0.17
LIMK1-202ENST00000418310 CEP170Q5SW79 1584 aa16.08■□□□□ 0.17
LIMK1-202ENST00000418310 C9orf84Q5VXU9 1444 aa16.08■□□□□ 0.16
LIMK1-202ENST00000418310 KIF15Q9NS87 1388 aa16.07■□□□□ 0.16
LIMK1-202ENST00000418310 NUDCQ9Y266 331 aa16.07■□□□□ 0.16
LIMK1-202ENST00000418310 BCORL1Q5H9F3 1711 aa16.07■□□□□ 0.16
LIMK1-202ENST00000418310 NBPF1Q3BBV0 1214 aa16.06■□□□□ 0.16
LIMK1-202ENST00000418310 CC2D1BQ5T0F9 858 aaKnown RBP16.06■□□□□ 0.16
LIMK1-202ENST00000418310 ROCK2O75116 1388 aaKnown RBP16.05■□□□□ 0.16
LIMK1-202ENST00000418310 PNISRQ8TF01 805 aaKnown RBP16.04■□□□□ 0.16
LIMK1-202ENST00000418310 SYNJ2O15056 1496 aa16.03■□□□□ 0.16
LIMK1-202ENST00000418310 NBR1Q14596 966 aa16.02■□□□□ 0.16
LIMK1-202ENST00000418310 ATP10BO94823 1461 aa16.02■□□□□ 0.16
LIMK1-202ENST00000418310 FANCIQ9NVI1 1328 aa16.02■□□□□ 0.15
LIMK1-202ENST00000418310 MAGI1Q96QZ7 1491 aaPredicted RBP16.01■□□□□ 0.15
LIMK1-202ENST00000418310 ERICH6BQ5W0A0 696 aa16.01■□□□□ 0.15
LIMK1-202ENST00000418310 MBD5Q9P267 1494 aa15.99■□□□□ 0.15
LIMK1-202ENST00000418310 ITSN2Q9NZM3 1697 aa15.99■□□□□ 0.15
LIMK1-202ENST00000418310 NPM2Q86SE8 214 aaKnown RBP15.99■□□□□ 0.15
LIMK1-202ENST00000418310 PTPRGP23470 1445 aa15.97■□□□□ 0.15
LIMK1-202ENST00000418310 SMG6Q86US8 1419 aaKnown RBP15.97■□□□□ 0.15
LIMK1-202ENST00000418310 ADGRL2O95490 1459 aa15.97■□□□□ 0.15
LIMK1-202ENST00000418310 CDCA7LQ96GN5 454 aa15.96■□□□□ 0.15
LIMK1-202ENST00000418310 BCL11AQ9H165 835 aa15.96■□□□□ 0.15
LIMK1-202ENST00000418310 KDM5CP41229 1560 aa15.96■□□□□ 0.15
LIMK1-202ENST00000418310 ADGBQ8N7X0 1667 aa15.95■□□□□ 0.14
LIMK1-202ENST00000418310 PAK3O75914 559 aaPredicted RBP15.95■□□□□ 0.14
LIMK1-202ENST00000418310 EXOC6Q8TAG9 804 aa15.95■□□□□ 0.14
LIMK1-202ENST00000418310 MYBBP1AQ9BQG0 1328 aaKnown RBP15.95■□□□□ 0.14
LIMK1-202ENST00000418310 PLIN1O60240 522 aa15.95■□□□□ 0.14
LIMK1-202ENST00000418310 CCDC144AA2RUR9 1427 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms