RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 ERCC6L2Q5T890 1561 aa35.8■■■■□ 3.32
DNMT3A-206ENST00000406659 CAMSAP2Q08AD1 1489 aa35.8■■■■□ 3.32
DNMT3A-206ENST00000406659 ROCK1Q13464 1354 aa35.79■■■■□ 3.32
DNMT3A-206ENST00000406659 TIMELESSQ9UNS1 1208 aa35.76■■■■□ 3.32
DNMT3A-206ENST00000406659 ABCC10Q5T3U5 1492 aa35.76■■■■□ 3.31
DNMT3A-206ENST00000406659 ZNF777Q9ULD5 760 aaPredicted RBP35.75■■■■□ 3.31
DNMT3A-206ENST00000406659 CDC42BPAQ5VT25 1732 aa35.7■■■■□ 3.31
DNMT3A-206ENST00000406659 TRIM52Q96A61 297 aa35.69■■■■□ 3.3
DNMT3A-206ENST00000406659 ACIN1Q9UKV3 1341 aaKnown RBP35.69■■■■□ 3.3
DNMT3A-206ENST00000406659 ABCC2Q92887 1545 aa35.68■■■■□ 3.3
DNMT3A-206ENST00000406659 KDM6BO15054 1643 aa35.68■■■■□ 3.3
DNMT3A-206ENST00000406659 ADGBQ8N7X0 1667 aa35.58■■■■□ 3.29
DNMT3A-206ENST00000406659 CROCC2H7BZ55 1655 aa35.57■■■■□ 3.29
DNMT3A-206ENST00000406659 UHRF1BP1LA0JNW5 1464 aa35.53■■■■□ 3.28
DNMT3A-206ENST00000406659 ADGRL2O95490 1459 aa35.53■■■■□ 3.28
DNMT3A-206ENST00000406659 NCOA1Q15788 1441 aa35.53■■■■□ 3.28
DNMT3A-206ENST00000406659 TONSLQ96HA7 1378 aa35.53■■■■□ 3.28
DNMT3A-206ENST00000406659 MPHOSPH9Q99550 1183 aa35.52■■■■□ 3.28
DNMT3A-206ENST00000406659 PPP1R15AO75807 674 aaPredicted RBP35.51■■■■□ 3.27
DNMT3A-206ENST00000406659 ANKRD30AQ9BXX3 1397 aa35.5■■■■□ 3.27
DNMT3A-206ENST00000406659 PREX2Q70Z35 1606 aa35.47■■■■□ 3.27
DNMT3A-206ENST00000406659 DENND4BO75064 1496 aaPredicted RBP35.47■■■■□ 3.27
DNMT3A-206ENST00000406659 SHANK2Q9UPX8 1470 aa35.45■■■■□ 3.27
DNMT3A-206ENST00000406659 CDC42BPBQ9Y5S2 1711 aa35.44■■■■□ 3.26
DNMT3A-206ENST00000406659 ZCCHC11Q5TAX3 1644 aaKnown RBP35.44■■■■□ 3.26
DNMT3A-206ENST00000406659 KDM5BQ9UGL1 1544 aa35.42■■■■□ 3.26
DNMT3A-206ENST00000406659 TSPY4P0CV99 314 aa35.42■■■■□ 3.26
DNMT3A-206ENST00000406659 TSPY10P0CW01 314 aa35.42■■■■□ 3.26
DNMT3A-206ENST00000406659 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.41■■■■□ 3.26
DNMT3A-206ENST00000406659 ARHGEF5Q12774 1597 aa35.41■■■■□ 3.26
DNMT3A-206ENST00000406659 C9orf84Q5VXU9 1444 aa35.41■■■■□ 3.26
DNMT3A-206ENST00000406659 HNRNPMP52272 730 aaKnown RBP eCLIP35.41■■■■□ 3.26
DNMT3A-206ENST00000406659 TTC37Q6PGP7 1564 aa35.4■■■■□ 3.26
DNMT3A-206ENST00000406659 SAMD9LQ8IVG5 1584 aa35.38■■■■□ 3.25
DNMT3A-206ENST00000406659 KCNH8Q96L42 1107 aa35.38■■■■□ 3.25
DNMT3A-206ENST00000406659 ARHGAP5Q13017 1502 aa35.35■■■■□ 3.25
DNMT3A-206ENST00000406659 MBD5Q9P267 1494 aa35.35■■■■□ 3.25
DNMT3A-206ENST00000406659 RSPH4AQ5TD94 716 aa35.35■■■■□ 3.25
DNMT3A-206ENST00000406659 SLC4A1APQ9BWU0 796 aaKnown RBP35.34■■■■□ 3.25
DNMT3A-206ENST00000406659 MIER1Q8N108 512 aa35.33■■■■□ 3.25
DNMT3A-206ENST00000406659 MYO5CQ9NQX4 1742 aa35.32■■■■□ 3.25
DNMT3A-206ENST00000406659 ANKRD50Q9ULJ7 1429 aa35.32■■■■□ 3.24
DNMT3A-206ENST00000406659 CCDC141Q6ZP82 1450 aa35.31■■■■□ 3.24
DNMT3A-206ENST00000406659 OSCARQ8IYS5 282 aa35.3■■■■□ 3.24
DNMT3A-206ENST00000406659 FOXD1Q16676 465 aa35.29■■■■□ 3.24
DNMT3A-206ENST00000406659 PZPP20742 1482 aa35.26■■■■□ 3.23
DNMT3A-206ENST00000406659 ANKRD30BQ9BXX2 1392 aa35.26■■■■□ 3.23
DNMT3A-206ENST00000406659 PLEKHH2Q8IVE3 1493 aa35.24■■■■□ 3.23
DNMT3A-206ENST00000406659 SYCP2Q9BX26 1530 aa35.22■■■■□ 3.23
DNMT3A-206ENST00000406659 KIF15Q9NS87 1388 aa35.22■■■■□ 3.23
DNMT3A-206ENST00000406659 PLCH2O75038 1416 aa35.21■■■■□ 3.23
DNMT3A-206ENST00000406659 KIAA1107Q9UPP5 1409 aa35.19■■■■□ 3.22
DNMT3A-206ENST00000406659 EFCAB2Q5VUJ9 269 aa35.16■■■■□ 3.22
DNMT3A-206ENST00000406659 RPRD2Q5VT52 1461 aaKnown RBP35.14■■■■□ 3.22
DNMT3A-206ENST00000406659 MAST1Q9Y2H9 1570 aa35.13■■■■□ 3.21
DNMT3A-206ENST00000406659 NUP155O75694 1391 aa35.11■■■■□ 3.21
DNMT3A-206ENST00000406659 WDR7Q9Y4E6 1490 aa35.11■■■■□ 3.21
DNMT3A-206ENST00000406659 PKD2Q13563 968 aa35.1■■■■□ 3.21
DNMT3A-206ENST00000406659 L3MBTL2Q969R5 705 aa35.08■■■■□ 3.21
DNMT3A-206ENST00000406659 KDM5DQ9BY66 1539 aa35.05■■■■□ 3.2
DNMT3A-206ENST00000406659 ARHGEF12Q9NZN5 1544 aa35.04■■■■□ 3.2
DNMT3A-206ENST00000406659 CENPBP07199 599 aaPredicted RBP35.02■■■■□ 3.2
DNMT3A-206ENST00000406659 ARAP3Q8WWN8 1544 aa35.02■■■■□ 3.2
DNMT3A-206ENST00000406659 HIRIP3Q9BW71 556 aaPredicted RBP35.01■■■■□ 3.2
DNMT3A-206ENST00000406659 ABCC1P33527 1531 aa34.99■■■■□ 3.19
DNMT3A-206ENST00000406659 PLXNC1O60486 1568 aa34.99■■■■□ 3.19
DNMT3A-206ENST00000406659 TEX14Q8IWB6 1497 aa34.96■■■■□ 3.19
DNMT3A-206ENST00000406659 NPM1P06748 294 aaKnown RBP eCLIP34.96■■■■□ 3.19
DNMT3A-206ENST00000406659 ASXL2Q76L83 1435 aa34.96■■■■□ 3.19
DNMT3A-206ENST00000406659 DDX10Q13206 875 aaKnown RBP34.93■■■■□ 3.18
DNMT3A-206ENST00000406659 ABCA9Q8IUA7 1624 aa34.92■■■■□ 3.18
DNMT3A-206ENST00000406659 TRAPPC8Q9Y2L5 1435 aa34.9■■■■□ 3.18
DNMT3A-206ENST00000406659 DUOX2Q9NRD8 1548 aa34.9■■■■□ 3.18
DNMT3A-206ENST00000406659 YTHDC1Q96MU7 727 aaKnown RBP34.89■■■■□ 3.18
DNMT3A-206ENST00000406659 FAM135AQ9P2D6 1515 aa34.86■■■■□ 3.17
DNMT3A-206ENST00000406659 UNC13BO14795 1591 aa34.85■■■■□ 3.17
DNMT3A-206ENST00000406659 FANCAO15360 1455 aa34.84■■■■□ 3.17
DNMT3A-206ENST00000406659 SPAG9O60271 1321 aaKnown RBP34.83■■■■□ 3.17
DNMT3A-206ENST00000406659 EIF4G2P78344 907 aaKnown RBP eCLIP34.82■■■■□ 3.17
DNMT3A-206ENST00000406659 ERBINQ96RT1 1412 aa34.82■■■■□ 3.16
DNMT3A-206ENST00000406659 HSPA5P11021 654 aaKnown RBP34.82■■■■□ 3.16
DNMT3A-206ENST00000406659 NBPF8Q3BBV2 869 aa34.82■■■■□ 3.16
DNMT3A-206ENST00000406659 RTEL1-TNFRSF6BF6WH68 1400 aa34.8■■■■□ 3.16
DNMT3A-206ENST00000406659 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.79■■■■□ 3.16
DNMT3A-206ENST00000406659 AFAP1Q8N556 730 aa34.78■■■■□ 3.16
DNMT3A-206ENST00000406659 IQGAP3Q86VI3 1631 aa34.72■■■■□ 3.15
DNMT3A-206ENST00000406659 ADGRL1O94910 1474 aa34.71■■■■□ 3.15
DNMT3A-206ENST00000406659 ZFYVE16Q7Z3T8 1539 aa34.71■■■■□ 3.15
DNMT3A-206ENST00000406659 SCAPERQ9BY12 1400 aa34.69■■■■□ 3.14
DNMT3A-206ENST00000406659 MAGI2Q86UL8 1455 aa34.67■■■■□ 3.14
DNMT3A-206ENST00000406659 ATP7AQ04656 1500 aa34.63■■■■□ 3.13
DNMT3A-206ENST00000406659 INO80Q9ULG1 1556 aaPredicted RBP34.62■■■■□ 3.13
DNMT3A-206ENST00000406659 ZNF326Q5BKZ1 582 aaKnown RBP34.62■■■■□ 3.13
DNMT3A-206ENST00000406659 MYT1LQ9UL68 1186 aa34.61■■■■□ 3.13
DNMT3A-206ENST00000406659 CCDC144AA2RUR9 1427 aa34.6■■■■□ 3.13
DNMT3A-206ENST00000406659 CD109Q6YHK3 1445 aa34.6■■■■□ 3.13
DNMT3A-206ENST00000406659 SCAF1Q9H7N4 1312 aaKnown RBP34.6■■■■□ 3.13
DNMT3A-206ENST00000406659 UHRF1BP1Q6BDS2 1440 aa34.59■■■■□ 3.13
DNMT3A-206ENST00000406659 ANP32CO43423 234 aa34.58■■■■□ 3.13
DNMT3A-206ENST00000406659 WASHC2AQ641Q2 1341 aa34.57■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms