RNA–Protein interactions for RNA: ENST00000406451.8

HDAC9-204, Transcript of histone deacetylase 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HDAC9, Length 9,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-204ENST00000406451 RAD54L2Q9Y4B4 1467 aa6.52□□□□□ -1.37
HDAC9-204ENST00000406451 FTSJ3Q8IY81 847 aaKnown RBP6.52□□□□□ -1.37
HDAC9-204ENST00000406451 EIF3AQ14152 1382 aaKnown RBP6.52□□□□□ -1.37
HDAC9-204ENST00000406451 MRC2Q9UBG0 1479 aa6.51□□□□□ -1.37
HDAC9-204ENST00000406451 ROCK2O75116 1388 aaKnown RBP6.51□□□□□ -1.37
HDAC9-204ENST00000406451 MORC1Q86VD1 984 aa6.5□□□□□ -1.37
HDAC9-204ENST00000406451 AEBP2Q6ZN18 517 aaPredicted RBP6.5□□□□□ -1.37
HDAC9-204ENST00000406451 FOXD1Q16676 465 aa6.5□□□□□ -1.37
HDAC9-204ENST00000406451 AQRO60306 1485 aaKnown RBP eCLIP6.5□□□□□ -1.37
HDAC9-204ENST00000406451 CSB-PGBD3P0DP91 1061 aa6.49□□□□□ -1.37
HDAC9-204ENST00000406451 FAM69CQ0P6D2 419 aa6.49□□□□□ -1.37
HDAC9-204ENST00000406451 ANP32BQ92688 251 aaKnown RBP6.49□□□□□ -1.37
HDAC9-204ENST00000406451 GRIN2BQ13224 1484 aa6.49□□□□□ -1.37
HDAC9-204ENST00000406451 MIER1Q8N108 512 aa6.48□□□□□ -1.37
HDAC9-204ENST00000406451 MPHOSPH9Q99550 1183 aa6.48□□□□□ -1.37
HDAC9-204ENST00000406451 HMGXB3Q12766 1538 aa6.48□□□□□ -1.37
HDAC9-204ENST00000406451 TIMELESSQ9UNS1 1208 aa6.48□□□□□ -1.37
HDAC9-204ENST00000406451 CCDC9Q9Y3X0 531 aaKnown RBP6.47□□□□□ -1.37
HDAC9-204ENST00000406451 RTF1Q92541 710 aaKnown RBP6.47□□□□□ -1.37
HDAC9-204ENST00000406451 RAB3GAP2Q9H2M9 1393 aa6.47□□□□□ -1.37
HDAC9-204ENST00000406451 CHMP4BQ9H444 224 aaKnown RBP6.47□□□□□ -1.37
HDAC9-204ENST00000406451 NESP48681 1621 aa6.47□□□□□ -1.37
HDAC9-204ENST00000406451 SENP3-EIF4A1A0A087X0R7 540 aa6.47□□□□□ -1.37
HDAC9-204ENST00000406451 CASC1Q6TDU7 716 aa6.46□□□□□ -1.37
HDAC9-204ENST00000406451 UACAQ9BZF9 1416 aa6.46□□□□□ -1.37
HDAC9-204ENST00000406451 NUTM2DQ5VT03 806 aaPredicted RBP6.46□□□□□ -1.37
HDAC9-204ENST00000406451 IRX6P78412 446 aaPredicted RBP6.46□□□□□ -1.38
HDAC9-204ENST00000406451 OS9Q13438 667 aaPredicted RBP6.46□□□□□ -1.38
HDAC9-204ENST00000406451 IFT140Q96RY7 1462 aa6.46□□□□□ -1.38
HDAC9-204ENST00000406451 GOLGA2Q08379 1002 aa6.46□□□□□ -1.38
HDAC9-204ENST00000406451 NGDNQ8NEJ9 315 aaKnown RBP6.46□□□□□ -1.38
HDAC9-204ENST00000406451 TERF2IPQ9NYB0 399 aa6.46□□□□□ -1.38
HDAC9-204ENST00000406451 KTN1Q86UP2 1357 aaKnown RBP6.45□□□□□ -1.38
HDAC9-204ENST00000406451 MS4A1P11836 297 aa6.45□□□□□ -1.38
HDAC9-204ENST00000406451 CCDC144AA2RUR9 1427 aa6.45□□□□□ -1.38
HDAC9-204ENST00000406451 RUSC2Q8N2Y8 1516 aa6.45□□□□□ -1.38
HDAC9-204ENST00000406451 CFTRP13569 1480 aa6.44□□□□□ -1.38
HDAC9-204ENST00000406451 IGF1RP08069 1367 aa6.44□□□□□ -1.38
HDAC9-204ENST00000406451 EIF5BO60841 1220 aaKnown RBP6.44□□□□□ -1.38
HDAC9-204ENST00000406451 FRAT1Q92837 279 aaPredicted RBP6.44□□□□□ -1.38
HDAC9-204ENST00000406451 CUX1P39880 1505 aa6.44□□□□□ -1.38
HDAC9-204ENST00000406451 HSPA5P11021 654 aaKnown RBP6.43□□□□□ -1.38
HDAC9-204ENST00000406451 ARHGAP5Q13017 1502 aa6.42□□□□□ -1.38
HDAC9-204ENST00000406451 PRG4Q92954 1404 aaPredicted RBP6.42□□□□□ -1.38
HDAC9-204ENST00000406451 TOPBP1Q92547 1522 aa6.42□□□□□ -1.38
HDAC9-204ENST00000406451 CALD1Q05682 793 aaKnown RBP6.42□□□□□ -1.38
HDAC9-204ENST00000406451 SYNJ2O15056 1496 aa6.42□□□□□ -1.38
HDAC9-204ENST00000406451 VGFO15240 615 aaPredicted RBP6.42□□□□□ -1.38
HDAC9-204ENST00000406451 DNMBPQ6XZF7 1577 aa6.41□□□□□ -1.38
HDAC9-204ENST00000406451 MYOM3Q5VTT5 1437 aa6.41□□□□□ -1.38
HDAC9-204ENST00000406451 UNC13AQ9UPW8 1703 aa6.41□□□□□ -1.38
HDAC9-204ENST00000406451 U2AF1L5P0DN76 240 aaPredicted RBP6.41□□□□□ -1.38
HDAC9-204ENST00000406451 U2AF1Q01081 240 aaKnown RBP eCLIP6.41□□□□□ -1.38
HDAC9-204ENST00000406451 ZNF330Q9Y3S2 320 aaPredicted RBP6.41□□□□□ -1.38
HDAC9-204ENST00000406451 BECN1Q14457 450 aa6.41□□□□□ -1.38
HDAC9-204ENST00000406451 NUTM2FA1L443 756 aa6.41□□□□□ -1.38
HDAC9-204ENST00000406451 CDK11BP21127 795 aaKnown RBP6.41□□□□□ -1.38
HDAC9-204ENST00000406451 CHMP4AQ9BY43 222 aa6.4□□□□□ -1.38
HDAC9-204ENST00000406451 LAMC3Q9Y6N6 1575 aa6.4□□□□□ -1.38
HDAC9-204ENST00000406451 AMPHP49418 695 aa6.4□□□□□ -1.38
HDAC9-204ENST00000406451 TRAK1Q9UPV9 953 aa6.4□□□□□ -1.39
HDAC9-204ENST00000406451 SNAPC4Q5SXM2 1469 aa6.4□□□□□ -1.39
HDAC9-204ENST00000406451 TMX4Q9H1E5 349 aaPredicted RBP6.4□□□□□ -1.39
HDAC9-204ENST00000406451 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.4□□□□□ -1.39
HDAC9-204ENST00000406451 SYNJ1O43426 1573 aa6.39□□□□□ -1.39
HDAC9-204ENST00000406451 TOP2BQ02880 1626 aa6.39□□□□□ -1.39
HDAC9-204ENST00000406451 NCLP19338 710 aaKnown RBP6.39□□□□□ -1.39
HDAC9-204ENST00000406451 KCNJ4P48050 445 aa6.39□□□□□ -1.39
HDAC9-204ENST00000406451 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.39□□□□□ -1.39
HDAC9-204ENST00000406451 KIF15Q9NS87 1388 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 FGD1P98174 961 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 RALBP1Q15311 655 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 KIF21BO75037 1637 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 MEX3CQ5U5Q3 659 aaKnown RBP6.38□□□□□ -1.39
HDAC9-204ENST00000406451 L3MBTL2Q969R5 705 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 POLA1P09884 1462 aaPredicted RBP6.38□□□□□ -1.39
HDAC9-204ENST00000406451 LTV1Q96GA3 475 aaPredicted RBP6.38□□□□□ -1.39
HDAC9-204ENST00000406451 ERICH3Q5RHP9 1530 aa6.38□□□□□ -1.39
HDAC9-204ENST00000406451 EVC2Q86UK5 1308 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 IPO8O15397 1037 aaKnown RBP6.37□□□□□ -1.39
HDAC9-204ENST00000406451 FYCO1Q9BQS8 1478 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 EVA1CP58658 441 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 BICRAQ9NZM4 1560 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 DDRGK1Q96HY6 314 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 HECW1Q76N89 1606 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 CASKIN1Q8WXD9 1431 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 SUPT16HQ9Y5B9 1047 aaKnown RBP6.37□□□□□ -1.39
HDAC9-204ENST00000406451 EFCAB5A4FU69 1503 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 STK31Q9BXU1 1019 aa6.37□□□□□ -1.39
HDAC9-204ENST00000406451 ZRSR1Q15695 479 aaKnown RBP6.36□□□□□ -1.39
HDAC9-204ENST00000406451 GOLGA6L22H0YM25 854 aa6.36□□□□□ -1.39
HDAC9-204ENST00000406451 ATF3P18847 181 aa6.36□□□□□ -1.39
HDAC9-204ENST00000406451 LMOD3Q0VAK6 560 aa6.36□□□□□ -1.39
HDAC9-204ENST00000406451 COG3Q96JB2 828 aa6.36□□□□□ -1.39
HDAC9-204ENST00000406451 FGD6Q6ZV73 1430 aa6.36□□□□□ -1.39
HDAC9-204ENST00000406451 RGS3P49796 1198 aa6.35□□□□□ -1.39
HDAC9-204ENST00000406451 MINK1Q8N4C8 1332 aaPredicted RBP6.35□□□□□ -1.39
HDAC9-204ENST00000406451 CGNL1Q0VF96 1302 aa6.35□□□□□ -1.39
HDAC9-204ENST00000406451 NAP1L2Q9ULW6 460 aaPredicted RBP6.35□□□□□ -1.39
HDAC9-204ENST00000406451 PSME1Q06323 249 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms