RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 C14orf37Q86TY3 774 aa12.37□□□□□ -0.43
LIG4-202ENST00000405925 MRS2Q9HD23 443 aa12.37□□□□□ -0.43
LIG4-202ENST00000405925 SLC24A1O60721 1099 aa12.36□□□□□ -0.43
LIG4-202ENST00000405925 HNRNPUQ00839 825 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIG4-202ENST00000405925 AFAP1Q8N556 730 aa12.36□□□□□ -0.43
LIG4-202ENST00000405925 SALL2Q9Y467 1007 aaPredicted RBP12.35□□□□□ -0.43
LIG4-202ENST00000405925 TROQ12816 1431 aaPredicted RBP12.35□□□□□ -0.43
LIG4-202ENST00000405925 DHX57Q6P158 1386 aaKnown RBP12.35□□□□□ -0.43
LIG4-202ENST00000405925 POGKQ9P215 609 aa12.35□□□□□ -0.43
LIG4-202ENST00000405925 PLB1Q6P1J6 1458 aa12.34□□□□□ -0.43
LIG4-202ENST00000405925 L3MBTL2Q969R5 705 aa12.34□□□□□ -0.43
LIG4-202ENST00000405925 KIF21AQ7Z4S6 1674 aa12.34□□□□□ -0.43
LIG4-202ENST00000405925 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
LIG4-202ENST00000405925 CDK13Q14004 1512 aaKnown RBP12.33□□□□□ -0.44
LIG4-202ENST00000405925 CDCA8Q53HL2 280 aa12.33□□□□□ -0.44
LIG4-202ENST00000405925 KIF15Q9NS87 1388 aa12.32□□□□□ -0.44
LIG4-202ENST00000405925 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
LIG4-202ENST00000405925 EPRSP07814 1512 aaKnown RBP12.32□□□□□ -0.44
LIG4-202ENST00000405925 TIAM1Q13009 1591 aa12.31□□□□□ -0.44
LIG4-202ENST00000405925 ARHGAP5Q13017 1502 aa12.3□□□□□ -0.44
LIG4-202ENST00000405925 SAFB2Q14151 953 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIG4-202ENST00000405925 HECW1Q76N89 1606 aa12.3□□□□□ -0.44
LIG4-202ENST00000405925 ERICH6Q7L0X2 663 aa12.3□□□□□ -0.44
LIG4-202ENST00000405925 GTF3C3Q9Y5Q9 886 aa12.3□□□□□ -0.44
LIG4-202ENST00000405925 HSPA5P11021 654 aaKnown RBP12.29□□□□□ -0.44
LIG4-202ENST00000405925 EHBP1L1Q8N3D4 1523 aa12.29□□□□□ -0.44
LIG4-202ENST00000405925 HDGFP51858 240 aaKnown RBP12.29□□□□□ -0.44
LIG4-202ENST00000405925 SCAF1Q9H7N4 1312 aaKnown RBP12.28□□□□□ -0.44
LIG4-202ENST00000405925 STK26Q9P289 416 aa12.28□□□□□ -0.44
LIG4-202ENST00000405925 PCF11O94913 1555 aaKnown RBP12.28□□□□□ -0.44
LIG4-202ENST00000405925 KNSTRNQ9Y448 316 aa12.28□□□□□ -0.44
LIG4-202ENST00000405925 RRBP1Q9P2E9 1410 aaKnown RBP12.28□□□□□ -0.44
LIG4-202ENST00000405925 WDR43Q15061 677 aaKnown RBP eCLIP12.28□□□□□ -0.44
LIG4-202ENST00000405925 NUTM2DQ5VT03 806 aaPredicted RBP12.28□□□□□ -0.44
LIG4-202ENST00000405925 ANKRD50Q9ULJ7 1429 aa12.27□□□□□ -0.45
LIG4-202ENST00000405925 CANXP27824 592 aaKnown RBP12.26□□□□□ -0.45
LIG4-202ENST00000405925 TMF1P82094 1093 aa12.26□□□□□ -0.45
LIG4-202ENST00000405925 WDR62O43379 1518 aa12.26□□□□□ -0.45
LIG4-202ENST00000405925 CCDC144AA2RUR9 1427 aa12.25□□□□□ -0.45
LIG4-202ENST00000405925 ROCK2O75116 1388 aaKnown RBP12.24□□□□□ -0.45
LIG4-202ENST00000405925 MIA2Q96PC5 1412 aa12.24□□□□□ -0.45
LIG4-202ENST00000405925 SENP3-EIF4A1A0A087X0R7 540 aa12.23□□□□□ -0.45
LIG4-202ENST00000405925 ZBTB7CA1YPR0 619 aa12.22□□□□□ -0.45
LIG4-202ENST00000405925 RAPGEF3O95398 923 aa12.22□□□□□ -0.45
LIG4-202ENST00000405925 SRPK2P78362 688 aaKnown RBP12.22□□□□□ -0.45
LIG4-202ENST00000405925 ARHGEF11O15085 1522 aa12.21□□□□□ -0.45
LIG4-202ENST00000405925 EIF4G3O43432 1585 aaKnown RBP12.21□□□□□ -0.45
LIG4-202ENST00000405925 SCAPERQ9BY12 1400 aa12.21□□□□□ -0.45
LIG4-202ENST00000405925 PPM1GO15355 546 aaPredicted RBP12.21□□□□□ -0.46
LIG4-202ENST00000405925 ADAMTS12P58397 1594 aa12.2□□□□□ -0.46
LIG4-202ENST00000405925 C9orf84Q5VXU9 1444 aa12.2□□□□□ -0.46
LIG4-202ENST00000405925 TNNT2P45379 298 aaPredicted RBP12.2□□□□□ -0.46
LIG4-202ENST00000405925 CC2D1BQ5T0F9 858 aaKnown RBP12.2□□□□□ -0.46
LIG4-202ENST00000405925 LMOD2Q6P5Q4 547 aa12.19□□□□□ -0.46
LIG4-202ENST00000405925 SUPT6HQ7KZ85 1726 aaKnown RBP12.18□□□□□ -0.46
LIG4-202ENST00000405925 PLEKHH2Q8IVE3 1493 aa12.17□□□□□ -0.46
LIG4-202ENST00000405925 BCL11AQ9H165 835 aa12.16□□□□□ -0.46
LIG4-202ENST00000405925 EID1Q9Y6B2 187 aa12.16□□□□□ -0.46
LIG4-202ENST00000405925 CFAP53Q96M91 514 aa12.16□□□□□ -0.46
LIG4-202ENST00000405925 DAPK1P53355 1430 aa12.15□□□□□ -0.46
LIG4-202ENST00000405925 TRAK1Q9UPV9 953 aa12.15□□□□□ -0.46
LIG4-202ENST00000405925 CD109Q6YHK3 1445 aa12.14□□□□□ -0.47
LIG4-202ENST00000405925 HFM1A2PYH4 1435 aa12.14□□□□□ -0.47
LIG4-202ENST00000405925 MAP3K1Q13233 1512 aa12.14□□□□□ -0.47
LIG4-202ENST00000405925 ST20-MTHFSA0A0A6YYL1 179 aa12.14□□□□□ -0.47
LIG4-202ENST00000405925 HAP1P54257 671 aaPredicted RBP12.13□□□□□ -0.47
LIG4-202ENST00000405925 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
LIG4-202ENST00000405925 FKBP8Q14318 412 aa12.12□□□□□ -0.47
LIG4-202ENST00000405925 NUP160Q12769 1436 aa12.12□□□□□ -0.47
LIG4-202ENST00000405925 SOX12O15370 315 aa12.12□□□□□ -0.47
LIG4-202ENST00000405925 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.12□□□□□ -0.479e-9■■■■■ 43.9
LIG4-202ENST00000405925 ABCA5Q8WWZ7 1642 aa12.12□□□□□ -0.47
LIG4-202ENST00000405925 ATP10BO94823 1461 aa12.11□□□□□ -0.47
LIG4-202ENST00000405925 THOC2Q8NI27 1593 aaKnown RBP12.11□□□□□ -0.47
LIG4-202ENST00000405925 UGGT2Q9NYU1 1516 aa12.11□□□□□ -0.47
LIG4-202ENST00000405925 DAXXQ9UER7 740 aaPredicted RBP12.11□□□□□ -0.47
LIG4-202ENST00000405925 NUP153P49790 1475 aaKnown RBP12.11□□□□□ -0.47
LIG4-202ENST00000405925 ZBTB47Q9UFB7 747 aaPredicted RBP12.11□□□□□ -0.47
LIG4-202ENST00000405925 NAIPQ13075 1403 aa12.1□□□□□ -0.47
LIG4-202ENST00000405925 EIF3AQ14152 1382 aaKnown RBP12.1□□□□□ -0.47
LIG4-202ENST00000405925 KIF14Q15058 1648 aa12.09□□□□□ -0.47
LIG4-202ENST00000405925 NEUROD2Q15784 382 aa12.09□□□□□ -0.47
LIG4-202ENST00000405925 CAMSAP2Q08AD1 1489 aa12.09□□□□□ -0.47
LIG4-202ENST00000405925 CCDC141Q6ZP82 1450 aa12.08□□□□□ -0.47
LIG4-202ENST00000405925 TARBP1Q13395 1621 aaKnown RBP12.08□□□□□ -0.48
LIG4-202ENST00000405925 NUTM2FA1L443 756 aa12.08□□□□□ -0.48
LIG4-202ENST00000405925 ABCC5O15440 1437 aa12.08□□□□□ -0.48
LIG4-202ENST00000405925 CTTNBP2Q8WZ74 1663 aa12.08□□□□□ -0.48
LIG4-202ENST00000405925 MORC1Q86VD1 984 aa12.08□□□□□ -0.48
LIG4-202ENST00000405925 KIAA0556O60303 1618 aa12.07□□□□□ -0.48
LIG4-202ENST00000405925 RAPGEF6Q8TEU7 1601 aa12.07□□□□□ -0.48
LIG4-202ENST00000405925 A0A0G2JS52 829 aa12.07□□□□□ -0.48
LIG4-202ENST00000405925 U2SURPO15042 1029 aaKnown RBP12.07□□□□□ -0.48
LIG4-202ENST00000405925 HDGFL2Q7Z4V5 671 aaPredicted RBP12.07□□□□□ -0.48
LIG4-202ENST00000405925 NUDCQ9Y266 331 aa12.06□□□□□ -0.48
LIG4-202ENST00000405925 USP47Q96K76 1375 aa12.06□□□□□ -0.48
LIG4-202ENST00000405925 ADGRL1O94910 1474 aa12.06□□□□□ -0.48
LIG4-202ENST00000405925 PBRM1Q86U86 1689 aa12.06□□□□□ -0.48
LIG4-202ENST00000405925 PTPN23Q9H3S7 1636 aa12.05□□□□□ -0.48
LIG4-202ENST00000405925 IRX6P78412 446 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms