RNA–Protein interactions for RNA: ENST00000400075.3

GABPA-202, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPA, Length 4,814 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-202ENST00000400075 NEUROD2Q15784 382 aa19.01■□□□□ 0.63
GABPA-202ENST00000400075 NGDNQ8NEJ9 315 aaKnown RBP19■□□□□ 0.63
GABPA-202ENST00000400075 LAS1LQ9Y4W2 734 aaKnown RBP18.99■□□□□ 0.63
GABPA-202ENST00000400075 IFT140Q96RY7 1462 aa18.98■□□□□ 0.63
GABPA-202ENST00000400075 MPHOSPH9Q99550 1183 aa18.98■□□□□ 0.63
GABPA-202ENST00000400075 CFTRP13569 1480 aa18.96■□□□□ 0.63
GABPA-202ENST00000400075 NUTM2FA1L443 756 aa18.95■□□□□ 0.62
GABPA-202ENST00000400075 PNNQ9H307 717 aaKnown RBP18.95■□□□□ 0.62
GABPA-202ENST00000400075 PRG4Q92954 1404 aaPredicted RBP18.95■□□□□ 0.62
GABPA-202ENST00000400075 SETD5Q9C0A6 1442 aa18.95■□□□□ 0.62
GABPA-202ENST00000400075 RTL5Q5HYW3 569 aaPredicted RBP18.94■□□□□ 0.62
GABPA-202ENST00000400075 MORC1Q86VD1 984 aa18.94■□□□□ 0.62
GABPA-202ENST00000400075 CC2D1BQ5T0F9 858 aaKnown RBP18.92■□□□□ 0.62
GABPA-202ENST00000400075 VGFO15240 615 aaPredicted RBP18.9■□□□□ 0.62
GABPA-202ENST00000400075 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.61
GABPA-202ENST00000400075 HSP90AA1P07900 732 aaKnown RBP18.88■□□□□ 0.61
GABPA-202ENST00000400075 TIMELESSQ9UNS1 1208 aa18.87■□□□□ 0.61
GABPA-202ENST00000400075 HMGXB3Q12766 1538 aa18.86■□□□□ 0.61
GABPA-202ENST00000400075 TERF2IPQ9NYB0 399 aa18.86■□□□□ 0.61
GABPA-202ENST00000400075 RTF1Q92541 710 aaKnown RBP18.86■□□□□ 0.61
GABPA-202ENST00000400075 RUSC2Q8N2Y8 1516 aa18.85■□□□□ 0.61
GABPA-202ENST00000400075 TRAK1Q9UPV9 953 aa18.83■□□□□ 0.6
GABPA-202ENST00000400075 ROCK2O75116 1388 aaKnown RBP18.82■□□□□ 0.6
GABPA-202ENST00000400075 SENP3-EIF4A1A0A087X0R7 540 aa18.81■□□□□ 0.6
GABPA-202ENST00000400075 MEX3CQ5U5Q3 659 aaKnown RBP18.81■□□□□ 0.6
GABPA-202ENST00000400075 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
GABPA-202ENST00000400075 AFAP1Q8N556 730 aa18.8■□□□□ 0.6
GABPA-202ENST00000400075 EIF3AQ14152 1382 aaKnown RBP18.8■□□□□ 0.6
GABPA-202ENST00000400075 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.8■□□□□ 0.6
GABPA-202ENST00000400075 CCDC136Q96JN2 1154 aa18.79■□□□□ 0.6
GABPA-202ENST00000400075 ZNF330Q9Y3S2 320 aaPredicted RBP18.78■□□□□ 0.6
GABPA-202ENST00000400075 ATF3P18847 181 aa18.77■□□□□ 0.6
GABPA-202ENST00000400075 AMPHP49418 695 aa18.77■□□□□ 0.6
GABPA-202ENST00000400075 SYNJ2O15056 1496 aa18.77■□□□□ 0.6
GABPA-202ENST00000400075 FTSJ3Q8IY81 847 aaKnown RBP18.77■□□□□ 0.6
GABPA-202ENST00000400075 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
GABPA-202ENST00000400075 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
GABPA-202ENST00000400075 EVA1CP58658 441 aa18.76■□□□□ 0.59
GABPA-202ENST00000400075 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
GABPA-202ENST00000400075 FKBP8Q14318 412 aa18.75■□□□□ 0.59
GABPA-202ENST00000400075 RAB3GAP2Q9H2M9 1393 aa18.74■□□□□ 0.59
GABPA-202ENST00000400075 CCDC144AA2RUR9 1427 aa18.74■□□□□ 0.59
GABPA-202ENST00000400075 POLA1P09884 1462 aaPredicted RBP18.73■□□□□ 0.59
GABPA-202ENST00000400075 LTV1Q96GA3 475 aaPredicted RBP18.73■□□□□ 0.59
GABPA-202ENST00000400075 UACAQ9BZF9 1416 aa18.73■□□□□ 0.59
GABPA-202ENST00000400075 TMX4Q9H1E5 349 aaPredicted RBP18.7■□□□□ 0.58
GABPA-202ENST00000400075 U2AF1L5P0DN76 240 aaPredicted RBP18.7■□□□□ 0.58
GABPA-202ENST00000400075 U2AF1Q01081 240 aaKnown RBP eCLIP18.7■□□□□ 0.58
GABPA-202ENST00000400075 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.7■□□□□ 0.58
GABPA-202ENST00000400075 PHF23Q9BUL5 403 aaPredicted RBP18.7■□□□□ 0.58
GABPA-202ENST00000400075 ANP32AP39687 249 aaKnown RBP18.69■□□□□ 0.58
GABPA-202ENST00000400075 OS9Q13438 667 aaPredicted RBP18.69■□□□□ 0.58
GABPA-202ENST00000400075 MYOM3Q5VTT5 1437 aa18.69■□□□□ 0.58
GABPA-202ENST00000400075 L3MBTL2Q969R5 705 aa18.69■□□□□ 0.58
GABPA-202ENST00000400075 RAPGEF3O95398 923 aa18.69■□□□□ 0.58
GABPA-202ENST00000400075 PSME1Q06323 249 aa18.69■□□□□ 0.58
GABPA-202ENST00000400075 ZNF644Q9H582 1327 aaPredicted RBP18.68■□□□□ 0.58
GABPA-202ENST00000400075 HSPA5P11021 654 aaKnown RBP18.68■□□□□ 0.58
GABPA-202ENST00000400075 THEMISQ8N1K5 641 aaPredicted RBP18.67■□□□□ 0.58
GABPA-202ENST00000400075 TXNDC2Q86VQ3 553 aa18.67■□□□□ 0.58
GABPA-202ENST00000400075 LAMC3Q9Y6N6 1575 aa18.67■□□□□ 0.58
GABPA-202ENST00000400075 PRDM2Q13029 1718 aa18.67■□□□□ 0.58
GABPA-202ENST00000400075 MINK1Q8N4C8 1332 aaPredicted RBP18.66■□□□□ 0.58
GABPA-202ENST00000400075 CHMP4AQ9BY43 222 aa18.66■□□□□ 0.58
GABPA-202ENST00000400075 KIF15Q9NS87 1388 aa18.65■□□□□ 0.58
GABPA-202ENST00000400075 BICRAQ9NZM4 1560 aa18.65■□□□□ 0.58
GABPA-202ENST00000400075 CHMP4BQ9H444 224 aaKnown RBP18.65■□□□□ 0.58
GABPA-202ENST00000400075 POGZQ7Z3K3 1410 aa18.65■□□□□ 0.58
GABPA-202ENST00000400075 PROSER2Q86WR7 435 aaPredicted RBP18.65■□□□□ 0.58
GABPA-202ENST00000400075 FRAT1Q92837 279 aaPredicted RBP18.65■□□□□ 0.58
GABPA-202ENST00000400075 MIER1Q8N108 512 aa18.63■□□□□ 0.57
GABPA-202ENST00000400075 ARHGAP5Q13017 1502 aa18.62■□□□□ 0.57
GABPA-202ENST00000400075 MS4A1P11836 297 aa18.61■□□□□ 0.57
GABPA-202ENST00000400075 EVC2Q86UK5 1308 aa18.61■□□□□ 0.57
GABPA-202ENST00000400075 CALD1Q05682 793 aaKnown RBP18.6■□□□□ 0.57
GABPA-202ENST00000400075 KTN1Q86UP2 1357 aaKnown RBP18.59■□□□□ 0.57
GABPA-202ENST00000400075 DNMBPQ6XZF7 1577 aa18.59■□□□□ 0.57
GABPA-202ENST00000400075 GTF2E1P29083 439 aaPredicted RBP18.58■□□□□ 0.57
GABPA-202ENST00000400075 COG3Q96JB2 828 aa18.58■□□□□ 0.57
GABPA-202ENST00000400075 MSH5O43196 834 aa18.58■□□□□ 0.56
GABPA-202ENST00000400075 SCAPERQ9BY12 1400 aa18.57■□□□□ 0.56
GABPA-202ENST00000400075 ANKLE2Q86XL3 938 aa18.57■□□□□ 0.56
GABPA-202ENST00000400075 IRX6P78412 446 aaPredicted RBP18.54■□□□□ 0.56
GABPA-202ENST00000400075 KIAA0586Q9BVV6 1533 aa18.53■□□□□ 0.56
GABPA-202ENST00000400075 STK31Q9BXU1 1019 aa18.51■□□□□ 0.55
GABPA-202ENST00000400075 DHX57Q6P158 1386 aaKnown RBP18.51■□□□□ 0.55
GABPA-202ENST00000400075 STAC3Q96MF2 364 aa18.5■□□□□ 0.55
GABPA-202ENST00000400075 CASC1Q6TDU7 716 aa18.5■□□□□ 0.55
GABPA-202ENST00000400075 ANKRD50Q9ULJ7 1429 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 ST20-MTHFSA0A0A6YYL1 179 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 CUX1P39880 1505 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 C1orf141Q5JVX7 400 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 G3V3G9 751 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 DCAF8Q5TAQ9 597 aa18.49■□□□□ 0.55
GABPA-202ENST00000400075 SYTL4Q96C24 671 aaPredicted RBP18.49■□□□□ 0.55
GABPA-202ENST00000400075 CASKIN1Q8WXD9 1431 aa18.48■□□□□ 0.55
GABPA-202ENST00000400075 CD109Q6YHK3 1445 aa18.48■□□□□ 0.55
GABPA-202ENST00000400075 PIP4K2BP78356 416 aa18.47■□□□□ 0.55
GABPA-202ENST00000400075 RALBP1Q15311 655 aa18.47■□□□□ 0.55
GABPA-202ENST00000400075 SLC52A1Q9NWF4 448 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms