RNA–Protein interactions for RNA: ENST00000392811.6

SMARCD3-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 2,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-203ENST00000392811 ROCK1Q13464 1354 aa36.83■■■■□ 3.49
SMARCD3-203ENST00000392811 TONSLQ96HA7 1378 aa36.81■■■■□ 3.48
SMARCD3-203ENST00000392811 GPATCH8Q9UKJ3 1502 aaKnown RBP36.8■■■■□ 3.48
SMARCD3-203ENST00000392811 ATP10BO94823 1461 aa36.78■■■■□ 3.48
SMARCD3-203ENST00000392811 DENND4BO75064 1496 aaPredicted RBP36.77■■■■□ 3.48
SMARCD3-203ENST00000392811 CAMSAP2Q08AD1 1489 aa36.77■■■■□ 3.48
SMARCD3-203ENST00000392811 TRIM52Q96A61 297 aa36.76■■■■□ 3.48
SMARCD3-203ENST00000392811 YTHDC1Q96MU7 727 aaKnown RBP36.76■■■■□ 3.48
SMARCD3-203ENST00000392811 CFDP1Q9UEE9 299 aaPredicted RBP36.76■■■■□ 3.47
SMARCD3-203ENST00000392811 PTPRGP23470 1445 aa36.71■■■■□ 3.47
SMARCD3-203ENST00000392811 PLEKHD1A6NEE1 506 aa36.71■■■■□ 3.47
SMARCD3-203ENST00000392811 MPHOSPH9Q99550 1183 aa36.65■■■■□ 3.46
SMARCD3-203ENST00000392811 SHROOM2Q13796 1616 aa36.65■■■■□ 3.46
SMARCD3-203ENST00000392811 ABCC10Q5T3U5 1492 aa36.64■■■■□ 3.46
SMARCD3-203ENST00000392811 CDC42BPAQ5VT25 1732 aa36.63■■■■□ 3.45
SMARCD3-203ENST00000392811 ZNF777Q9ULD5 760 aaPredicted RBP36.61■■■■□ 3.45
SMARCD3-203ENST00000392811 KDM5BQ9UGL1 1544 aa36.61■■■■□ 3.45
SMARCD3-203ENST00000392811 CROCC2H7BZ55 1655 aa36.6■■■■□ 3.45
SMARCD3-203ENST00000392811 ADGBQ8N7X0 1667 aa36.6■■■■□ 3.45
SMARCD3-203ENST00000392811 NCOA1Q15788 1441 aa36.54■■■■□ 3.44
SMARCD3-203ENST00000392811 ADGRL2O95490 1459 aa36.54■■■■□ 3.44
SMARCD3-203ENST00000392811 FOXD1Q16676 465 aa36.47■■■■□ 3.43
SMARCD3-203ENST00000392811 HIRIP3Q9BW71 556 aaPredicted RBP36.47■■■■□ 3.43
SMARCD3-203ENST00000392811 GTF3C3Q9Y5Q9 886 aa36.46■■■■□ 3.43
SMARCD3-203ENST00000392811 ERCC6L2Q5T890 1561 aa36.46■■■■□ 3.43
SMARCD3-203ENST00000392811 DDX10Q13206 875 aaKnown RBP36.43■■■■□ 3.42
SMARCD3-203ENST00000392811 ANKRD30BQ9BXX2 1392 aa36.43■■■■□ 3.42
SMARCD3-203ENST00000392811 ANKRD30AQ9BXX3 1397 aa36.43■■■■□ 3.42
SMARCD3-203ENST00000392811 SHANK2Q9UPX8 1470 aa36.39■■■■□ 3.42
SMARCD3-203ENST00000392811 SLC4A1APQ9BWU0 796 aaKnown RBP36.39■■■■□ 3.42
SMARCD3-203ENST00000392811 PZPP20742 1482 aa36.38■■■■□ 3.41
SMARCD3-203ENST00000392811 CLASP1Q7Z460 1538 aa36.35■■■■□ 3.41
SMARCD3-203ENST00000392811 RPRD2Q5VT52 1461 aaKnown RBP36.35■■■■□ 3.41
SMARCD3-203ENST00000392811 ABCC2Q92887 1545 aa36.34■■■■□ 3.41
SMARCD3-203ENST00000392811 C9orf84Q5VXU9 1444 aa36.34■■■■□ 3.41
SMARCD3-203ENST00000392811 PREX2Q70Z35 1606 aa36.33■■■■□ 3.41
SMARCD3-203ENST00000392811 CDC42BPBQ9Y5S2 1711 aa36.32■■■■□ 3.4
SMARCD3-203ENST00000392811 ARHGEF5Q12774 1597 aa36.31■■■■□ 3.4
SMARCD3-203ENST00000392811 L3MBTL2Q969R5 705 aa36.3■■■■□ 3.4
SMARCD3-203ENST00000392811 ANKRD50Q9ULJ7 1429 aa36.3■■■■□ 3.4
SMARCD3-203ENST00000392811 SAMD9LQ8IVG5 1584 aa36.28■■■■□ 3.4
SMARCD3-203ENST00000392811 MBD5Q9P267 1494 aa36.26■■■■□ 3.4
SMARCD3-203ENST00000392811 HNRNPMP52272 730 aaKnown RBP eCLIP36.25■■■■□ 3.39
SMARCD3-203ENST00000392811 TSPY4P0CV99 314 aa36.24■■■■□ 3.39
SMARCD3-203ENST00000392811 TSPY10P0CW01 314 aa36.24■■■■□ 3.39
SMARCD3-203ENST00000392811 TEX14Q8IWB6 1497 aa36.23■■■■□ 3.39
SMARCD3-203ENST00000392811 TTC37Q6PGP7 1564 aa36.23■■■■□ 3.39
SMARCD3-203ENST00000392811 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.21■■■■□ 3.39
SMARCD3-203ENST00000392811 KIAA1107Q9UPP5 1409 aa36.2■■■■□ 3.38
SMARCD3-203ENST00000392811 CCDC141Q6ZP82 1450 aa36.18■■■■□ 3.38
SMARCD3-203ENST00000392811 KIF15Q9NS87 1388 aa36.15■■■■□ 3.38
SMARCD3-203ENST00000392811 HSPA5P11021 654 aaKnown RBP36.13■■■■□ 3.38
SMARCD3-203ENST00000392811 KCNH8Q96L42 1107 aa36.13■■■■□ 3.38
SMARCD3-203ENST00000392811 ARHGAP5Q13017 1502 aa36.13■■■■□ 3.37
SMARCD3-203ENST00000392811 PKD2Q13563 968 aa36.12■■■■□ 3.37
SMARCD3-203ENST00000392811 UHRF1BP1LA0JNW5 1464 aa36.12■■■■□ 3.37
SMARCD3-203ENST00000392811 ZCCHC11Q5TAX3 1644 aaKnown RBP36.11■■■■□ 3.37
SMARCD3-203ENST00000392811 MYO5CQ9NQX4 1742 aa36.1■■■■□ 3.37
SMARCD3-203ENST00000392811 RSPH4AQ5TD94 716 aa36.1■■■■□ 3.37
SMARCD3-203ENST00000392811 KDM5DQ9BY66 1539 aa36.1■■■■□ 3.37
SMARCD3-203ENST00000392811 NUP155O75694 1391 aa36.09■■■■□ 3.37
SMARCD3-203ENST00000392811 SYCP2Q9BX26 1530 aa36.09■■■■□ 3.37
SMARCD3-203ENST00000392811 EIF4G2P78344 907 aaKnown RBP eCLIP36.08■■■■□ 3.37
SMARCD3-203ENST00000392811 NBPF8Q3BBV2 869 aa36.08■■■■□ 3.37
SMARCD3-203ENST00000392811 ANP32CO43423 234 aa36.03■■■■□ 3.36
SMARCD3-203ENST00000392811 MAST1Q9Y2H9 1570 aa36.02■■■■□ 3.36
SMARCD3-203ENST00000392811 WASHC2AQ641Q2 1341 aa35.98■■■■□ 3.35
SMARCD3-203ENST00000392811 PLEKHH2Q8IVE3 1493 aa35.98■■■■□ 3.35
SMARCD3-203ENST00000392811 CCER2I3L3R5 266 aa35.96■■■■□ 3.35
SMARCD3-203ENST00000392811 PLCH2O75038 1416 aa35.93■■■■□ 3.34
SMARCD3-203ENST00000392811 ARHGEF12Q9NZN5 1544 aa35.89■■■■□ 3.34
SMARCD3-203ENST00000392811 PLXNC1O60486 1568 aa35.88■■■■□ 3.33
SMARCD3-203ENST00000392811 FAM135AQ9P2D6 1515 aa35.86■■■■□ 3.33
SMARCD3-203ENST00000392811 SPATA31E1Q6ZUB1 1445 aa35.86■■■■□ 3.33
SMARCD3-203ENST00000392811 UNC13BO14795 1591 aa35.83■■■■□ 3.33
SMARCD3-203ENST00000392811 EFCAB2Q5VUJ9 269 aa35.83■■■■□ 3.33
SMARCD3-203ENST00000392811 C11orf95C9JLR9 678 aaPredicted RBP35.81■■■■□ 3.32
SMARCD3-203ENST00000392811 CCDC7Q96M83 1385 aa35.8■■■■□ 3.32
SMARCD3-203ENST00000392811 ABCC1P33527 1531 aa35.8■■■■□ 3.32
SMARCD3-203ENST00000392811 CNTLNQ9NXG0 1405 aa35.76■■■■□ 3.32
SMARCD3-203ENST00000392811 DUOX2Q9NRD8 1548 aa35.75■■■■□ 3.31
SMARCD3-203ENST00000392811 UHRF1BP1Q6BDS2 1440 aa35.74■■■■□ 3.31
SMARCD3-203ENST00000392811 ZNF326Q5BKZ1 582 aaKnown RBP35.74■■■■□ 3.31
SMARCD3-203ENST00000392811 POLR1AO95602 1720 aaPredicted RBP35.74■■■■□ 3.31
SMARCD3-203ENST00000392811 ARAP3Q8WWN8 1544 aa35.72■■■■□ 3.31
SMARCD3-203ENST00000392811 WDR7Q9Y4E6 1490 aa35.71■■■■□ 3.31
SMARCD3-203ENST00000392811 TRAPPC8Q9Y2L5 1435 aa35.71■■■■□ 3.31
SMARCD3-203ENST00000392811 IQGAP3Q86VI3 1631 aa35.69■■■■□ 3.3
SMARCD3-203ENST00000392811 ERBINQ96RT1 1412 aa35.68■■■■□ 3.3
SMARCD3-203ENST00000392811 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.66■■■■□ 3.3
SMARCD3-203ENST00000392811 KIF7Q2M1P5 1343 aa35.66■■■■□ 3.3
SMARCD3-203ENST00000392811 RALGAPBQ86X10 1494 aa35.66■■■■□ 3.3
SMARCD3-203ENST00000392811 USP47Q96K76 1375 aa35.66■■■■□ 3.3
SMARCD3-203ENST00000392811 KDM5CP41229 1560 aa35.63■■■■□ 3.29
SMARCD3-203ENST00000392811 MAGI2Q86UL8 1455 aa35.63■■■■□ 3.29
SMARCD3-203ENST00000392811 CCDC144AA2RUR9 1427 aa35.6■■■■□ 3.29
SMARCD3-203ENST00000392811 PLA2R1Q13018 1463 aa35.59■■■■□ 3.29
SMARCD3-203ENST00000392811 ABCA9Q8IUA7 1624 aa35.58■■■■□ 3.29
SMARCD3-203ENST00000392811 BCORL1Q5H9F3 1711 aa35.57■■■■□ 3.28
SMARCD3-203ENST00000392811 DCAF11Q8TEB1 546 aa35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms