RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 ABCC5O15440 1437 aa16.9■□□□□ 0.3
SMARCAL1-203ENST00000392128 PREX2Q70Z35 1606 aa16.9■□□□□ 0.3
SMARCAL1-203ENST00000392128 ZNF644Q9H582 1327 aaPredicted RBP16.9■□□□□ 0.3
SMARCAL1-203ENST00000392128 CROCC2H7BZ55 1655 aa16.89■□□□□ 0.29
SMARCAL1-203ENST00000392128 ROCK1Q13464 1354 aa16.89■□□□□ 0.29
SMARCAL1-203ENST00000392128 MAPKBP1O60336 1514 aa16.88■□□□□ 0.29
SMARCAL1-203ENST00000392128 CDC42BPBQ9Y5S2 1711 aa16.88■□□□□ 0.29
SMARCAL1-203ENST00000392128 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.88■□□□□ 0.29
SMARCAL1-203ENST00000392128 TTC37Q6PGP7 1564 aa16.87■□□□□ 0.29
SMARCAL1-203ENST00000392128 ADGBQ8N7X0 1667 aa16.86■□□□□ 0.29
SMARCAL1-203ENST00000392128 MYO5CQ9NQX4 1742 aa16.85■□□□□ 0.29
SMARCAL1-203ENST00000392128 CHIC2Q9UKJ5 165 aa16.84■□□□□ 0.29
SMARCAL1-203ENST00000392128 RRP7BPQ9NSQ0 103 aa16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 ARHGEF5Q12774 1597 aa16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 ADGRL2O95490 1459 aa16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 ZNF777Q9ULD5 760 aaPredicted RBP16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 SAMD9LQ8IVG5 1584 aa16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 SHANK2Q9UPX8 1470 aa16.82■□□□□ 0.28
SMARCAL1-203ENST00000392128 KDM6BO15054 1643 aa16.8■□□□□ 0.28
SMARCAL1-203ENST00000392128 ACIN1Q9UKV3 1341 aaKnown RBP16.79■□□□□ 0.28
SMARCAL1-203ENST00000392128 WDR7Q9Y4E6 1490 aa16.78■□□□□ 0.28
SMARCAL1-203ENST00000392128 ARHGAP5Q13017 1502 aa16.78■□□□□ 0.28
SMARCAL1-203ENST00000392128 NCOA1Q15788 1441 aa16.78■□□□□ 0.28
SMARCAL1-203ENST00000392128 MBD5Q9P267 1494 aa16.77■□□□□ 0.28
SMARCAL1-203ENST00000392128 PLCH2O75038 1416 aa16.76■□□□□ 0.27
SMARCAL1-203ENST00000392128 ARAP3Q8WWN8 1544 aa16.75■□□□□ 0.27
SMARCAL1-203ENST00000392128 KCNH8Q96L42 1107 aa16.75■□□□□ 0.27
SMARCAL1-203ENST00000392128 PLEKHH2Q8IVE3 1493 aa16.75■□□□□ 0.27
SMARCAL1-203ENST00000392128 CCDC141Q6ZP82 1450 aa16.74■□□□□ 0.27
SMARCAL1-203ENST00000392128 C9orf84Q5VXU9 1444 aa16.74■□□□□ 0.27
SMARCAL1-203ENST00000392128 ANKRD30AQ9BXX3 1397 aa16.74■□□□□ 0.27
SMARCAL1-203ENST00000392128 RSPH4AQ5TD94 716 aa16.74■□□□□ 0.27
SMARCAL1-203ENST00000392128 KIAA1107Q9UPP5 1409 aa16.73■□□□□ 0.27
SMARCAL1-203ENST00000392128 SYCP2Q9BX26 1530 aa16.73■□□□□ 0.27
SMARCAL1-203ENST00000392128 ABCA9Q8IUA7 1624 aa16.72■□□□□ 0.27
SMARCAL1-203ENST00000392128 ASXL2Q76L83 1435 aa16.71■□□□□ 0.27
SMARCAL1-203ENST00000392128 MAST1Q9Y2H9 1570 aa16.71■□□□□ 0.27
SMARCAL1-203ENST00000392128 HNRNPMP52272 730 aaKnown RBP eCLIP16.7■□□□□ 0.26
SMARCAL1-203ENST00000392128 TSPY4P0CV99 314 aa16.69■□□□□ 0.26
SMARCAL1-203ENST00000392128 TSPY10P0CW01 314 aa16.69■□□□□ 0.26
SMARCAL1-203ENST00000392128 DENND4BO75064 1496 aaPredicted RBP16.68■□□□□ 0.26
SMARCAL1-203ENST00000392128 ABCC1P33527 1531 aa16.68■□□□□ 0.26
SMARCAL1-203ENST00000392128 NPM1P06748 294 aaKnown RBP eCLIP16.67■□□□□ 0.26
SMARCAL1-203ENST00000392128 EFCAB2Q5VUJ9 269 aa16.67■□□□□ 0.26
SMARCAL1-203ENST00000392128 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
SMARCAL1-203ENST00000392128 TRIM52Q96A61 297 aa16.67■□□□□ 0.26
SMARCAL1-203ENST00000392128 ANKRD50Q9ULJ7 1429 aa16.66■□□□□ 0.26
SMARCAL1-203ENST00000392128 SIN3AQ96ST3 1273 aa16.66■□□□□ 0.26
SMARCAL1-203ENST00000392128 ARHGEF12Q9NZN5 1544 aa16.65■□□□□ 0.26
SMARCAL1-203ENST00000392128 PLXNC1O60486 1568 aa16.64■□□□□ 0.25
SMARCAL1-203ENST00000392128 RIMBP3CA6NJZ7 1639 aa16.64■□□□□ 0.25
SMARCAL1-203ENST00000392128 RIMBP3BA6NNM3 1639 aa16.64■□□□□ 0.25
SMARCAL1-203ENST00000392128 RIMBP3Q9UFD9 1639 aa16.64■□□□□ 0.25
SMARCAL1-203ENST00000392128 MPHOSPH9Q99550 1183 aa16.64■□□□□ 0.25
SMARCAL1-203ENST00000392128 KIF15Q9NS87 1388 aa16.63■□□□□ 0.25
SMARCAL1-203ENST00000392128 ZNF316A6NFI3 1004 aaPredicted RBP16.61■□□□□ 0.25
SMARCAL1-203ENST00000392128 NEUROD1Q13562 356 aa16.61■□□□□ 0.25
SMARCAL1-203ENST00000392128 PZPP20742 1482 aa16.61■□□□□ 0.25
SMARCAL1-203ENST00000392128 FANCAO15360 1455 aa16.6■□□□□ 0.25
SMARCAL1-203ENST00000392128 KDM5DQ9BY66 1539 aa16.59■□□□□ 0.25
SMARCAL1-203ENST00000392128 TRAPPC8Q9Y2L5 1435 aa16.57■□□□□ 0.24
SMARCAL1-203ENST00000392128 CFAP74Q9C0B2 1584 aa16.56■□□□□ 0.24
SMARCAL1-203ENST00000392128 SLC4A1APQ9BWU0 796 aaKnown RBP16.56■□□□□ 0.24
SMARCAL1-203ENST00000392128 DUOX2Q9NRD8 1548 aa16.55■□□□□ 0.24
SMARCAL1-203ENST00000392128 TONSLQ96HA7 1378 aa16.55■□□□□ 0.24
SMARCAL1-203ENST00000392128 RTEL1-TNFRSF6BF6WH68 1400 aa16.55■□□□□ 0.24
SMARCAL1-203ENST00000392128 ANKRD30BQ9BXX2 1392 aa16.54■□□□□ 0.24
SMARCAL1-203ENST00000392128 UNC13BO14795 1591 aa16.54■□□□□ 0.24
SMARCAL1-203ENST00000392128 ADGRL1O94910 1474 aa16.53■□□□□ 0.24
SMARCAL1-203ENST00000392128 ZFYVE16Q7Z3T8 1539 aa16.53■□□□□ 0.24
SMARCAL1-203ENST00000392128 CYB5RLQ6IPT4 315 aa16.53■□□□□ 0.24
SMARCAL1-203ENST00000392128 PELP1Q8IZL8 1130 aaKnown RBP16.53■□□□□ 0.24
SMARCAL1-203ENST00000392128 CD109Q6YHK3 1445 aa16.52■□□□□ 0.24
SMARCAL1-203ENST00000392128 ERBINQ96RT1 1412 aa16.52■□□□□ 0.24
SMARCAL1-203ENST00000392128 INO80Q9ULG1 1556 aaPredicted RBP16.52■□□□□ 0.23
SMARCAL1-203ENST00000392128 PPP1R15AO75807 674 aaPredicted RBP16.51■□□□□ 0.23
SMARCAL1-203ENST00000392128 NUP155O75694 1391 aa16.51■□□□□ 0.23
SMARCAL1-203ENST00000392128 SCAPERQ9BY12 1400 aa16.5■□□□□ 0.23
SMARCAL1-203ENST00000392128 RPRD2Q5VT52 1461 aaKnown RBP16.5■□□□□ 0.23
SMARCAL1-203ENST00000392128 FOXD1Q16676 465 aa16.49■□□□□ 0.23
SMARCAL1-203ENST00000392128 SPAG9O60271 1321 aaKnown RBP16.49■□□□□ 0.23
SMARCAL1-203ENST00000392128 ATP7AQ04656 1500 aa16.48■□□□□ 0.23
SMARCAL1-203ENST00000392128 GLI2P10070 1586 aa16.48■□□□□ 0.23
SMARCAL1-203ENST00000392128 AFAP1Q8N556 730 aa16.48■□□□□ 0.23
SMARCAL1-203ENST00000392128 FAM135AQ9P2D6 1515 aa16.48■□□□□ 0.23
SMARCAL1-203ENST00000392128 MAGI2Q86UL8 1455 aa16.48■□□□□ 0.23
SMARCAL1-203ENST00000392128 MAP3K4Q9Y6R4 1608 aa16.47■□□□□ 0.23
SMARCAL1-203ENST00000392128 IQGAP3Q86VI3 1631 aa16.47■□□□□ 0.23
SMARCAL1-203ENST00000392128 DIEXFQ68CQ4 756 aaKnown RBP16.47■□□□□ 0.23
SMARCAL1-203ENST00000392128 PKD2Q13563 968 aa16.46■□□□□ 0.23
SMARCAL1-203ENST00000392128 ZNF518AQ6AHZ1 1483 aa16.45■□□□□ 0.22
SMARCAL1-203ENST00000392128 NEO1Q92859 1461 aa16.45■□□□□ 0.22
SMARCAL1-203ENST00000392128 KDM5CP41229 1560 aa16.43■□□□□ 0.22
SMARCAL1-203ENST00000392128 TEX14Q8IWB6 1497 aa16.43■□□□□ 0.22
SMARCAL1-203ENST00000392128 KIDINS220Q9ULH0 1771 aa16.42■□□□□ 0.22
SMARCAL1-203ENST00000392128 POGZQ7Z3K3 1410 aa16.42■□□□□ 0.22
SMARCAL1-203ENST00000392128 DEPDC5O75140 1603 aa16.41■□□□□ 0.22
SMARCAL1-203ENST00000392128 EIF2AK4Q9P2K8 1649 aaKnown RBP16.41■□□□□ 0.22
SMARCAL1-203ENST00000392128 DIP2BQ9P265 1576 aa16.41■□□□□ 0.22
SMARCAL1-203ENST00000392128 MLH3Q9UHC1 1453 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms