RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 DISP1Q96F81 1524 aa13.58□□□□□ -0.24
COL6A3-204ENST00000392003 CFDP1Q9UEE9 299 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-204ENST00000392003 HIRIP3Q9BW71 556 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-204ENST00000392003 RAPGEF6Q8TEU7 1601 aa13.56□□□□□ -0.24
COL6A3-204ENST00000392003 ANP32CO43423 234 aa13.55□□□□□ -0.24
COL6A3-204ENST00000392003 GCC2Q8IWJ2 1684 aa13.55□□□□□ -0.24
COL6A3-204ENST00000392003 SALL2Q9Y467 1007 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-204ENST00000392003 NUP153P49790 1475 aaKnown RBP13.54□□□□□ -0.24
COL6A3-204ENST00000392003 UBE2Q2Q8WVN8 375 aa13.54□□□□□ -0.24
COL6A3-204ENST00000392003 PTPRGP23470 1445 aa13.54□□□□□ -0.24
COL6A3-204ENST00000392003 MPHOSPH9Q99550 1183 aa13.53□□□□□ -0.24
COL6A3-204ENST00000392003 PLB1Q6P1J6 1458 aa13.53□□□□□ -0.24
COL6A3-204ENST00000392003 NUP160Q12769 1436 aa13.53□□□□□ -0.24
COL6A3-204ENST00000392003 PRG4Q92954 1404 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-204ENST00000392003 CEP170Q5SW79 1584 aa13.52□□□□□ -0.25
COL6A3-204ENST00000392003 DAPK1P53355 1430 aa13.51□□□□□ -0.25
COL6A3-204ENST00000392003 ROCK1Q13464 1354 aa13.51□□□□□ -0.25
COL6A3-204ENST00000392003 TROQ12816 1431 aaPredicted RBP13.51□□□□□ -0.25
COL6A3-204ENST00000392003 ZNF644Q9H582 1327 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-204ENST00000392003 ABCC5O15440 1437 aa13.48□□□□□ -0.25
COL6A3-204ENST00000392003 CCER2I3L3R5 266 aa13.48□□□□□ -0.25
COL6A3-204ENST00000392003 KCNH8Q96L42 1107 aa13.47□□□□□ -0.25
COL6A3-204ENST00000392003 SLC4A1APQ9BWU0 796 aaKnown RBP13.47□□□□□ -0.25
COL6A3-204ENST00000392003 DNMT1P26358 1616 aaKnown RBP13.47□□□□□ -0.25
COL6A3-204ENST00000392003 EIF4G2P78344 907 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL6A3-204ENST00000392003 TSPY4P0CV99 314 aa13.45□□□□□ -0.26
COL6A3-204ENST00000392003 TSPY10P0CW01 314 aa13.45□□□□□ -0.26
COL6A3-204ENST00000392003 KDM6BO15054 1643 aa13.45□□□□□ -0.26
COL6A3-204ENST00000392003 FOXD1Q16676 465 aa13.44□□□□□ -0.26
COL6A3-204ENST00000392003 ITSN2Q9NZM3 1697 aa13.44□□□□□ -0.26
COL6A3-204ENST00000392003 L3MBTL2Q969R5 705 aa13.43□□□□□ -0.26
COL6A3-204ENST00000392003 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
COL6A3-204ENST00000392003 HSPA5P11021 654 aaKnown RBP13.43□□□□□ -0.26
COL6A3-204ENST00000392003 PODXL2Q9NZ53 605 aa13.41□□□□□ -0.26
COL6A3-204ENST00000392003 GPATCH8Q9UKJ3 1502 aaKnown RBP13.41□□□□□ -0.26
COL6A3-204ENST00000392003 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
COL6A3-204ENST00000392003 ANKRD30AQ9BXX3 1397 aa13.4□□□□□ -0.26
COL6A3-204ENST00000392003 DENND4BO75064 1496 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-204ENST00000392003 SUPT16HQ9Y5B9 1047 aaKnown RBP13.4□□□□□ -0.26
COL6A3-204ENST00000392003 ANKRD30BQ9BXX2 1392 aa13.39□□□□□ -0.27
COL6A3-204ENST00000392003 KDM5BQ9UGL1 1544 aa13.39□□□□□ -0.27
COL6A3-204ENST00000392003 ADCY10Q96PN6 1610 aa13.37□□□□□ -0.27
COL6A3-204ENST00000392003 ATP10BO94823 1461 aa13.37□□□□□ -0.27
COL6A3-204ENST00000392003 NCOA1Q15788 1441 aa13.37□□□□□ -0.27
COL6A3-204ENST00000392003 RPRD2Q5VT52 1461 aaKnown RBP13.37□□□□□ -0.27
COL6A3-204ENST00000392003 HNRNPMP52272 730 aaKnown RBP eCLIP13.37□□□□□ -0.27
COL6A3-204ENST00000392003 KIF14Q15058 1648 aa13.37□□□□□ -0.27
COL6A3-204ENST00000392003 NEFLP07196 543 aa13.36□□□□□ -0.27
COL6A3-204ENST00000392003 PKNOX2Q96KN3 472 aa13.35□□□□□ -0.27
COL6A3-204ENST00000392003 ADGBQ8N7X0 1667 aa13.35□□□□□ -0.27
COL6A3-204ENST00000392003 ABCA8O94911 1581 aa13.35□□□□□ -0.27
COL6A3-204ENST00000392003 MYT1LQ9UL68 1186 aa13.34□□□□□ -0.27
COL6A3-204ENST00000392003 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-204ENST00000392003 ADGRL2O95490 1459 aa13.34□□□□□ -0.27
COL6A3-204ENST00000392003 WASHC2AQ641Q2 1341 aa13.34□□□□□ -0.27
COL6A3-204ENST00000392003 PKD2Q13563 968 aa13.33□□□□□ -0.28
COL6A3-204ENST00000392003 ANKRD50Q9ULJ7 1429 aa13.33□□□□□ -0.28
COL6A3-204ENST00000392003 KIAA1107Q9UPP5 1409 aa13.31□□□□□ -0.28
COL6A3-204ENST00000392003 AEBP2Q6ZN18 517 aaPredicted RBP13.31□□□□□ -0.28
COL6A3-204ENST00000392003 PZPP20742 1482 aa13.31□□□□□ -0.28
COL6A3-204ENST00000392003 CHD1O14646 1710 aa13.31□□□□□ -0.28
COL6A3-204ENST00000392003 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
COL6A3-204ENST00000392003 NBPF8Q3BBV2 869 aa13.3□□□□□ -0.28
COL6A3-204ENST00000392003 C9orf84Q5VXU9 1444 aa13.3□□□□□ -0.28
COL6A3-204ENST00000392003 ZNF326Q5BKZ1 582 aaKnown RBP13.29□□□□□ -0.28
COL6A3-204ENST00000392003 NUP155O75694 1391 aa13.29□□□□□ -0.28
COL6A3-204ENST00000392003 ABCC10Q5T3U5 1492 aa13.29□□□□□ -0.28
COL6A3-204ENST00000392003 TEX14Q8IWB6 1497 aa13.29□□□□□ -0.28
COL6A3-204ENST00000392003 CROCC2H7BZ55 1655 aa13.29□□□□□ -0.28
COL6A3-204ENST00000392003 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.29□□□□□ -0.28
COL6A3-204ENST00000392003 CNTLNQ9NXG0 1405 aa13.29□□□□□ -0.28
COL6A3-204ENST00000392003 SHANK2Q9UPX8 1470 aa13.28□□□□□ -0.28
COL6A3-204ENST00000392003 CCDC7Q96M83 1385 aa13.28□□□□□ -0.28
COL6A3-204ENST00000392003 FKBP8Q14318 412 aa13.28□□□□□ -0.28
COL6A3-204ENST00000392003 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
COL6A3-204ENST00000392003 CDC42BPAQ5VT25 1732 aa13.28□□□□□ -0.28
COL6A3-204ENST00000392003 RSPH4AQ5TD94 716 aa13.27□□□□□ -0.28
COL6A3-204ENST00000392003 HNRNPUQ00839 825 aaKnown RBP eCLIP13.27□□□□□ -0.29
COL6A3-204ENST00000392003 EFCAB2Q5VUJ9 269 aa13.27□□□□□ -0.29
COL6A3-204ENST00000392003 KIF15Q9NS87 1388 aa13.25□□□□□ -0.29
COL6A3-204ENST00000392003 BCANQ96GW7 911 aa13.24□□□□□ -0.29
COL6A3-204ENST00000392003 POLR3GLQ9BT43 218 aa13.23□□□□□ -0.29
COL6A3-204ENST00000392003 C11orf95C9JLR9 678 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-204ENST00000392003 ERCC6L2Q5T890 1561 aa13.22□□□□□ -0.29
COL6A3-204ENST00000392003 CCDC141Q6ZP82 1450 aa13.22□□□□□ -0.29
COL6A3-204ENST00000392003 ARHGAP5Q13017 1502 aa13.22□□□□□ -0.29
COL6A3-204ENST00000392003 KIF7Q2M1P5 1343 aa13.22□□□□□ -0.29
COL6A3-204ENST00000392003 ARHGEF5Q12774 1597 aa13.21□□□□□ -0.29
COL6A3-204ENST00000392003 PRKRIP1Q9H875 184 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-204ENST00000392003 MRS2Q9HD23 443 aa13.2□□□□□ -0.3
COL6A3-204ENST00000392003 USP47Q96K76 1375 aa13.2□□□□□ -0.3
COL6A3-204ENST00000392003 ABCC2Q92887 1545 aa13.19□□□□□ -0.3
COL6A3-204ENST00000392003 SPATA31E1Q6ZUB1 1445 aa13.19□□□□□ -0.3
COL6A3-204ENST00000392003 KDM2AQ9Y2K7 1162 aa13.18□□□□□ -0.3
COL6A3-204ENST00000392003 MBD5Q9P267 1494 aa13.18□□□□□ -0.3
COL6A3-204ENST00000392003 CARD11Q9BXL7 1154 aa13.18□□□□□ -0.3
COL6A3-204ENST00000392003 FAM9BQ8IZU0 186 aa13.17□□□□□ -0.3
COL6A3-204ENST00000392003 PREX2Q70Z35 1606 aa13.17□□□□□ -0.3
COL6A3-204ENST00000392003 KDM5DQ9BY66 1539 aa13.17□□□□□ -0.3
COL6A3-204ENST00000392003 SAMD9LQ8IVG5 1584 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms