RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CHIC2Q9UKJ5 165 aa36.81■■■■□ 3.48
SHOX2-201ENST00000389589 ZNF644Q9H582 1327 aaPredicted RBP36.79■■■■□ 3.48
SHOX2-201ENST00000389589 UHRF1BP1LA0JNW5 1464 aa36.78■■■■□ 3.48
SHOX2-201ENST00000389589 RRP7BPQ9NSQ0 103 aa36.78■■■■□ 3.48
SHOX2-201ENST00000389589 ACIN1Q9UKV3 1341 aaKnown RBP36.74■■■■□ 3.47
SHOX2-201ENST00000389589 CROCC2H7BZ55 1655 aa36.74■■■■□ 3.47
SHOX2-201ENST00000389589 ADGBQ8N7X0 1667 aa36.73■■■■□ 3.47
SHOX2-201ENST00000389589 PREX2Q70Z35 1606 aa36.66■■■■□ 3.46
SHOX2-201ENST00000389589 ZCCHC11Q5TAX3 1644 aaKnown RBP36.66■■■■□ 3.46
SHOX2-201ENST00000389589 TIMELESSQ9UNS1 1208 aa36.66■■■■□ 3.46
SHOX2-201ENST00000389589 KDM6BO15054 1643 aa36.66■■■■□ 3.46
SHOX2-201ENST00000389589 ZNF777Q9ULD5 760 aaPredicted RBP36.65■■■■□ 3.46
SHOX2-201ENST00000389589 KDM5BQ9UGL1 1544 aa36.63■■■■□ 3.45
SHOX2-201ENST00000389589 CDC42BPBQ9Y5S2 1711 aa36.62■■■■□ 3.45
SHOX2-201ENST00000389589 ADGRL2O95490 1459 aa36.61■■■■□ 3.45
SHOX2-201ENST00000389589 DIEXFQ68CQ4 756 aaKnown RBP36.58■■■■□ 3.45
SHOX2-201ENST00000389589 SHANK2Q9UPX8 1470 aa36.57■■■■□ 3.44
SHOX2-201ENST00000389589 SIN3AQ96ST3 1273 aa36.57■■■■□ 3.44
SHOX2-201ENST00000389589 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.56■■■■□ 3.44
SHOX2-201ENST00000389589 ARHGEF5Q12774 1597 aa36.56■■■■□ 3.44
SHOX2-201ENST00000389589 TTC37Q6PGP7 1564 aa36.55■■■■□ 3.44
SHOX2-201ENST00000389589 NCOA1Q15788 1441 aa36.54■■■■□ 3.44
SHOX2-201ENST00000389589 MYO5CQ9NQX4 1742 aa36.54■■■■□ 3.44
SHOX2-201ENST00000389589 NEUROD1Q13562 356 aa36.52■■■■□ 3.44
SHOX2-201ENST00000389589 OSCARQ8IYS5 282 aa36.52■■■■□ 3.44
SHOX2-201ENST00000389589 TRIM52Q96A61 297 aa36.5■■■■□ 3.43
SHOX2-201ENST00000389589 ANKRD30AQ9BXX3 1397 aa36.5■■■■□ 3.43
SHOX2-201ENST00000389589 SAMD9LQ8IVG5 1584 aa36.5■■■■□ 3.43
SHOX2-201ENST00000389589 ARHGAP5Q13017 1502 aa36.43■■■■□ 3.42
SHOX2-201ENST00000389589 C9orf84Q5VXU9 1444 aa36.43■■■■□ 3.42
SHOX2-201ENST00000389589 MBD5Q9P267 1494 aa36.43■■■■□ 3.42
SHOX2-201ENST00000389589 DENND4BO75064 1496 aaPredicted RBP36.42■■■■□ 3.42
SHOX2-201ENST00000389589 RSPH4AQ5TD94 716 aa36.41■■■■□ 3.42
SHOX2-201ENST00000389589 MPHOSPH9Q99550 1183 aa36.4■■■■□ 3.42
SHOX2-201ENST00000389589 CCDC141Q6ZP82 1450 aa36.39■■■■□ 3.42
SHOX2-201ENST00000389589 TSPY4P0CV99 314 aa36.39■■■■□ 3.42
SHOX2-201ENST00000389589 TSPY10P0CW01 314 aa36.39■■■■□ 3.42
SHOX2-201ENST00000389589 PLEKHH2Q8IVE3 1493 aa36.37■■■■□ 3.41
SHOX2-201ENST00000389589 TONSLQ96HA7 1378 aa36.36■■■■□ 3.41
SHOX2-201ENST00000389589 KCNH8Q96L42 1107 aa36.35■■■■□ 3.41
SHOX2-201ENST00000389589 HNRNPMP52272 730 aaKnown RBP eCLIP36.34■■■■□ 3.41
SHOX2-201ENST00000389589 PLCH2O75038 1416 aa36.32■■■■□ 3.4
SHOX2-201ENST00000389589 KIAA1107Q9UPP5 1409 aa36.31■■■■□ 3.4
SHOX2-201ENST00000389589 PPP1R15AO75807 674 aaPredicted RBP36.3■■■■□ 3.4
SHOX2-201ENST00000389589 ANKRD50Q9ULJ7 1429 aa36.3■■■■□ 3.4
SHOX2-201ENST00000389589 SYCP2Q9BX26 1530 aa36.3■■■■□ 3.4
SHOX2-201ENST00000389589 MAST1Q9Y2H9 1570 aa36.29■■■■□ 3.4
SHOX2-201ENST00000389589 WDR7Q9Y4E6 1490 aa36.28■■■■□ 3.4
SHOX2-201ENST00000389589 ARAP3Q8WWN8 1544 aa36.26■■■■□ 3.39
SHOX2-201ENST00000389589 PZPP20742 1482 aa36.22■■■■□ 3.39
SHOX2-201ENST00000389589 KIF15Q9NS87 1388 aa36.21■■■■□ 3.39
SHOX2-201ENST00000389589 SLC4A1APQ9BWU0 796 aaKnown RBP36.2■■■■□ 3.39
SHOX2-201ENST00000389589 EFCAB2Q5VUJ9 269 aa36.2■■■■□ 3.39
SHOX2-201ENST00000389589 ANKRD30BQ9BXX2 1392 aa36.17■■■■□ 3.38
SHOX2-201ENST00000389589 ABCA9Q8IUA7 1624 aa36.15■■■■□ 3.38
SHOX2-201ENST00000389589 ABCC1P33527 1531 aa36.15■■■■□ 3.38
SHOX2-201ENST00000389589 PLXNC1O60486 1568 aa36.14■■■■□ 3.38
SHOX2-201ENST00000389589 KDM5DQ9BY66 1539 aa36.14■■■■□ 3.38
SHOX2-201ENST00000389589 ARHGEF12Q9NZN5 1544 aa36.1■■■■□ 3.37
SHOX2-201ENST00000389589 ASXL2Q76L83 1435 aa36.1■■■■□ 3.37
SHOX2-201ENST00000389589 RPRD2Q5VT52 1461 aaKnown RBP36.09■■■■□ 3.37
SHOX2-201ENST00000389589 FOXD1Q16676 465 aa36.08■■■■□ 3.37
SHOX2-201ENST00000389589 NPM1P06748 294 aaKnown RBP eCLIP36.06■■■■□ 3.36
SHOX2-201ENST00000389589 NUP155O75694 1391 aa36.03■■■■□ 3.36
SHOX2-201ENST00000389589 DUOX2Q9NRD8 1548 aa35.98■■■■□ 3.35
SHOX2-201ENST00000389589 UNC13BO14795 1591 aa35.96■■■■□ 3.35
SHOX2-201ENST00000389589 PKD2Q13563 968 aa35.96■■■■□ 3.35
SHOX2-201ENST00000389589 FANCAO15360 1455 aa35.95■■■■□ 3.35
SHOX2-201ENST00000389589 TRAPPC8Q9Y2L5 1435 aa35.94■■■■□ 3.34
SHOX2-201ENST00000389589 RTEL1-TNFRSF6BF6WH68 1400 aa35.91■■■■□ 3.34
SHOX2-201ENST00000389589 TEX14Q8IWB6 1497 aa35.91■■■■□ 3.34
SHOX2-201ENST00000389589 ERBINQ96RT1 1412 aa35.9■■■■□ 3.34
SHOX2-201ENST00000389589 L3MBTL2Q969R5 705 aa35.9■■■■□ 3.34
SHOX2-201ENST00000389589 MIER1Q8N108 512 aa35.89■■■■□ 3.34
SHOX2-201ENST00000389589 FAM135AQ9P2D6 1515 aa35.88■■■■□ 3.33
SHOX2-201ENST00000389589 ZFYVE16Q7Z3T8 1539 aa35.83■■■■□ 3.33
SHOX2-201ENST00000389589 SPAG9O60271 1321 aaKnown RBP35.83■■■■□ 3.33
SHOX2-201ENST00000389589 IQGAP3Q86VI3 1631 aa35.83■■■■□ 3.33
SHOX2-201ENST00000389589 ADGRL1O94910 1474 aa35.81■■■■□ 3.32
SHOX2-201ENST00000389589 CFAP74Q9C0B2 1584 aa35.81■■■■□ 3.32
SHOX2-201ENST00000389589 MAGI2Q86UL8 1455 aa35.79■■■■□ 3.32
SHOX2-201ENST00000389589 INO80Q9ULG1 1556 aaPredicted RBP35.78■■■■□ 3.32
SHOX2-201ENST00000389589 AFAP1Q8N556 730 aa35.76■■■■□ 3.31
SHOX2-201ENST00000389589 SCAPERQ9BY12 1400 aa35.75■■■■□ 3.31
SHOX2-201ENST00000389589 ATP7AQ04656 1500 aa35.75■■■■□ 3.31
SHOX2-201ENST00000389589 CD109Q6YHK3 1445 aa35.71■■■■□ 3.31
SHOX2-201ENST00000389589 RIMBP3CA6NJZ7 1639 aa35.69■■■■□ 3.3
SHOX2-201ENST00000389589 RIMBP3BA6NNM3 1639 aa35.69■■■■□ 3.3
SHOX2-201ENST00000389589 RIMBP3Q9UFD9 1639 aa35.69■■■■□ 3.3
SHOX2-201ENST00000389589 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.64■■■■□ 3.3
SHOX2-201ENST00000389589 HIRIP3Q9BW71 556 aaPredicted RBP35.64■■■■□ 3.3
SHOX2-201ENST00000389589 ZNF518AQ6AHZ1 1483 aa35.62■■■■□ 3.29
SHOX2-201ENST00000389589 DEPDC5O75140 1603 aa35.62■■■■□ 3.29
SHOX2-201ENST00000389589 NBPF8Q3BBV2 869 aa35.61■■■■□ 3.29
SHOX2-201ENST00000389589 EIF4G2P78344 907 aaKnown RBP eCLIP35.61■■■■□ 3.297e-7■■□□□ 12.9
SHOX2-201ENST00000389589 EIF2AK4Q9P2K8 1649 aaKnown RBP35.6■■■■□ 3.29
SHOX2-201ENST00000389589 KIDINS220Q9ULH0 1771 aa35.57■■■■□ 3.28
SHOX2-201ENST00000389589 DDX10Q13206 875 aaKnown RBP35.56■■■■□ 3.28
SHOX2-201ENST00000389589 HSPA5P11021 654 aaKnown RBP35.56■■■■□ 3.28
SHOX2-201ENST00000389589 CCDC144AA2RUR9 1427 aa35.55■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms