RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TPM4P67936 248 aa15.75■□□□□ 0.11
VPS13A-204ENST00000376634 RTF1Q92541 710 aaKnown RBP15.75■□□□□ 0.11
VPS13A-204ENST00000376634 GPATCH3Q96I76 525 aa15.75■□□□□ 0.11
VPS13A-204ENST00000376634 CCDC34Q96HJ3 373 aa15.75■□□□□ 0.11
VPS13A-204ENST00000376634 ARID3AQ99856 593 aa15.74■□□□□ 0.11
VPS13A-204ENST00000376634 USP35Q9P2H5 1018 aa15.73■□□□□ 0.11
VPS13A-204ENST00000376634 DEKP35659 375 aaKnown RBP15.73■□□□□ 0.11
VPS13A-204ENST00000376634 TMX4Q9H1E5 349 aaPredicted RBP15.73■□□□□ 0.11
VPS13A-204ENST00000376634 BAZ1BQ9UIG0 1483 aaKnown RBP15.72■□□□□ 0.11
VPS13A-204ENST00000376634 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.11
VPS13A-204ENST00000376634 KIF27Q86VH2 1401 aa15.71■□□□□ 0.11
VPS13A-204ENST00000376634 TMF1P82094 1093 aa15.7■□□□□ 0.1
VPS13A-204ENST00000376634 SRPK2P78362 688 aaKnown RBP15.69■□□□□ 0.1
VPS13A-204ENST00000376634 IPO8O15397 1037 aaKnown RBP15.69■□□□□ 0.1
VPS13A-204ENST00000376634 HDGFP51858 240 aaKnown RBP15.68■□□□□ 0.1
VPS13A-204ENST00000376634 SETQ01105 290 aaPredicted RBP15.68■□□□□ 0.1
VPS13A-204ENST00000376634 SOX12O15370 315 aa15.68■□□□□ 0.1
VPS13A-204ENST00000376634 CALD1Q05682 793 aaKnown RBP15.68■□□□□ 0.1
VPS13A-204ENST00000376634 B4GALNT3Q6L9W6 998 aa15.68■□□□□ 0.1
VPS13A-204ENST00000376634 CCNB3Q8WWL7 1395 aa15.66■□□□□ 0.1
VPS13A-204ENST00000376634 FHAD1B1AJZ9 1412 aa15.66■□□□□ 0.1
VPS13A-204ENST00000376634 MORC1Q86VD1 984 aa15.66■□□□□ 0.1
VPS13A-204ENST00000376634 PHF14O94880 888 aa15.66■□□□□ 0.1
VPS13A-204ENST00000376634 KTN1Q86UP2 1357 aaKnown RBP15.66■□□□□ 0.1
VPS13A-204ENST00000376634 APBB1O00213 710 aa15.65■□□□□ 0.1
VPS13A-204ENST00000376634 PDE4CQ08493 712 aa15.65■□□□□ 0.1
VPS13A-204ENST00000376634 HSP90B1P14625 803 aaKnown RBP15.65■□□□□ 0.1
VPS13A-204ENST00000376634 CSPP1Q1MSJ5 1256 aa15.65■□□□□ 0.1
VPS13A-204ENST00000376634 RASSF8Q8NHQ8 419 aa15.64■□□□□ 0.09
VPS13A-204ENST00000376634 EIF3AQ14152 1382 aaKnown RBP15.63■□□□□ 0.09
VPS13A-204ENST00000376634 GORABQ5T7V8 394 aa15.62■□□□□ 0.09
VPS13A-204ENST00000376634 CEP89Q96ST8 783 aa15.62■□□□□ 0.09
VPS13A-204ENST00000376634 GZF1Q9H116 711 aaPredicted RBP15.62■□□□□ 0.09
VPS13A-204ENST00000376634 ITPRIPQ8IWB1 547 aa15.61■□□□□ 0.09
VPS13A-204ENST00000376634 SPAG9O60271 1321 aaKnown RBP15.61■□□□□ 0.09
VPS13A-204ENST00000376634 ARHGAP35Q9NRY4 1499 aa15.61■□□□□ 0.09
VPS13A-204ENST00000376634 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.61■□□□□ 0.09
VPS13A-204ENST00000376634 ZNF330Q9Y3S2 320 aaPredicted RBP15.61■□□□□ 0.09
VPS13A-204ENST00000376634 CALRP27797 417 aaKnown RBP15.6■□□□□ 0.09
VPS13A-204ENST00000376634 CHMP3Q9Y3E7 222 aa15.6■□□□□ 0.09
VPS13A-204ENST00000376634 PRDM2Q13029 1718 aa15.59■□□□□ 0.09
VPS13A-204ENST00000376634 DCAF11Q8TEB1 546 aa15.59■□□□□ 0.09
VPS13A-204ENST00000376634 CHMP4AQ9BY43 222 aa15.59■□□□□ 0.09
VPS13A-204ENST00000376634 TPM3P06753 285 aa15.59■□□□□ 0.09
VPS13A-204ENST00000376634 HDGFL2Q7Z4V5 671 aaPredicted RBP15.58■□□□□ 0.08
VPS13A-204ENST00000376634 CREBRFQ8IUR6 639 aa15.57■□□□□ 0.08
VPS13A-204ENST00000376634 TRIM6-TRIM34B2RNG4 842 aa15.57■□□□□ 0.08
VPS13A-204ENST00000376634 TAF7LQ5H9L4 462 aa15.57■□□□□ 0.08
VPS13A-204ENST00000376634 VPS53Q5VIR6 699 aa15.57■□□□□ 0.08
VPS13A-204ENST00000376634 WRNQ14191 1432 aaPredicted RBP eCLIP15.57■□□□□ 0.08
VPS13A-204ENST00000376634 NACADO15069 1562 aa15.57■□□□□ 0.08
VPS13A-204ENST00000376634 PAK3O75914 559 aaPredicted RBP15.57■□□□□ 0.08
VPS13A-204ENST00000376634 ROCK2O75116 1388 aaKnown RBP15.56■□□□□ 0.08
VPS13A-204ENST00000376634 SAFB2Q14151 953 aaKnown RBP eCLIP15.56■□□□□ 0.08
VPS13A-204ENST00000376634 RWDD1Q9H446 243 aaPredicted RBP15.56■□□□□ 0.08
VPS13A-204ENST00000376634 G3V3G9 751 aa15.55■□□□□ 0.08
VPS13A-204ENST00000376634 DCAF8Q5TAQ9 597 aa15.55■□□□□ 0.08
VPS13A-204ENST00000376634 SLKQ9H2G2 1235 aaPredicted RBP15.55■□□□□ 0.08
VPS13A-204ENST00000376634 HDAC5Q9UQL6 1122 aa15.54■□□□□ 0.08
VPS13A-204ENST00000376634 CSB-PGBD3P0DP91 1061 aa15.53■□□□□ 0.08
VPS13A-204ENST00000376634 STK31Q9BXU1 1019 aa15.53■□□□□ 0.08
VPS13A-204ENST00000376634 HMMRO75330 724 aa15.53■□□□□ 0.08
VPS13A-204ENST00000376634 KIF16BQ96L93 1317 aa15.53■□□□□ 0.08
VPS13A-204ENST00000376634 TSR1Q2NL82 804 aaKnown RBP15.52■□□□□ 0.08
VPS13A-204ENST00000376634 GOLGA6L3A6NEY3 463 aa15.52■□□□□ 0.07
VPS13A-204ENST00000376634 KIF3AQ9Y496 699 aa15.52■□□□□ 0.07
VPS13A-204ENST00000376634 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
VPS13A-204ENST00000376634 PES1O00541 588 aaKnown RBP15.5■□□□□ 0.07
VPS13A-204ENST00000376634 CCDC70Q6NSX1 233 aa15.5■□□□□ 0.07
VPS13A-204ENST00000376634 MLECQ14165 292 aa15.49■□□□□ 0.07
VPS13A-204ENST00000376634 TCEAL9Q9UHQ7 104 aa15.49■□□□□ 0.07
VPS13A-204ENST00000376634 PMFBP1Q8TBY8 1022 aa15.49■□□□□ 0.07
VPS13A-204ENST00000376634 HSP90AA2PQ14568 343 aaPredicted RBP15.49■□□□□ 0.07
VPS13A-204ENST00000376634 TPD52L1Q16890 204 aaPredicted RBP15.49■□□□□ 0.07
VPS13A-204ENST00000376634 STK26Q9P289 416 aa15.48■□□□□ 0.07
VPS13A-204ENST00000376634 ST18O60284 1047 aa15.48■□□□□ 0.07
VPS13A-204ENST00000376634 RCAN3Q9UKA8 241 aa15.48■□□□□ 0.07
VPS13A-204ENST00000376634 MARCH6O60337 910 aa15.48■□□□□ 0.07
VPS13A-204ENST00000376634 U2AF1L5P0DN76 240 aaPredicted RBP15.48■□□□□ 0.07
VPS13A-204ENST00000376634 U2AF1Q01081 240 aaKnown RBP eCLIP15.48■□□□□ 0.073e-6■□□□□ 8.7
VPS13A-204ENST00000376634 MFAP1P55081 439 aaKnown RBP15.47■□□□□ 0.07
VPS13A-204ENST00000376634 TPM2P07951 284 aa15.47■□□□□ 0.07
VPS13A-204ENST00000376634 TCERG1O14776 1098 aaKnown RBP15.47■□□□□ 0.07
VPS13A-204ENST00000376634 TPM1P09493 284 aa15.46■□□□□ 0.07
VPS13A-204ENST00000376634 TRHP20396 242 aaPredicted RBP15.46■□□□□ 0.07
VPS13A-204ENST00000376634 SIN3AQ96ST3 1273 aa15.45■□□□□ 0.06
VPS13A-204ENST00000376634 KRI1Q8N9T8 703 aaKnown RBP15.45■□□□□ 0.06
VPS13A-204ENST00000376634 H3BQV1 296 aa15.44■□□□□ 0.06
VPS13A-204ENST00000376634 IFFO2Q5TF58 517 aa15.44■□□□□ 0.06
VPS13A-204ENST00000376634 TNIKQ9UKE5 1360 aa15.44■□□□□ 0.06
VPS13A-204ENST00000376634 SMC4Q9NTJ3 1288 aa15.44■□□□□ 0.06
VPS13A-204ENST00000376634 SF3A1Q15459 793 aaKnown RBP15.44■□□□□ 0.06
VPS13A-204ENST00000376634 FRAT2O75474 233 aaPredicted RBP15.44■□□□□ 0.06
VPS13A-204ENST00000376634 CCER2I3L3R5 266 aa15.43■□□□□ 0.06
VPS13A-204ENST00000376634 BAZ1AQ9NRL2 1556 aaPredicted RBP15.43■□□□□ 0.06
VPS13A-204ENST00000376634 ANO8Q9HCE9 1232 aaPredicted RBP15.43■□□□□ 0.06
VPS13A-204ENST00000376634 SETD5Q9C0A6 1442 aa15.43■□□□□ 0.06
VPS13A-204ENST00000376634 RALBP1Q15311 655 aa15.43■□□□□ 0.06
VPS13A-204ENST00000376634 DDX11L8A8MPP1 907 aa15.43■□□□□ 0.06
VPS13A-204ENST00000376634 TOMM22Q9NS69 142 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms