RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GOLGA3Q08378 1498 aa17.44■□□□□ 0.38
COL4A1-201ENST00000375820 FOXD4L1Q9NU39 408 aa17.43■□□□□ 0.38
COL4A1-201ENST00000375820 NOL8Q76FK4 1167 aaKnown RBP17.43■□□□□ 0.38
COL4A1-201ENST00000375820 PNNQ9H307 717 aaKnown RBP17.42■□□□□ 0.38
COL4A1-201ENST00000375820 CHMP4BQ9H444 224 aaKnown RBP17.42■□□□□ 0.38
COL4A1-201ENST00000375820 MS4A1P11836 297 aa17.42■□□□□ 0.38
COL4A1-201ENST00000375820 ITPRIPQ8IWB1 547 aa17.41■□□□□ 0.38
COL4A1-201ENST00000375820 PRM3Q9NNZ6 103 aa17.41■□□□□ 0.38
COL4A1-201ENST00000375820 HSP90B1P14625 803 aaKnown RBP17.41■□□□□ 0.38
COL4A1-201ENST00000375820 CHMP3Q9Y3E7 222 aa17.4■□□□□ 0.38
COL4A1-201ENST00000375820 CREBRFQ8IUR6 639 aa17.39■□□□□ 0.37
COL4A1-201ENST00000375820 NOC3LQ8WTT2 800 aaKnown RBP17.39■□□□□ 0.37
COL4A1-201ENST00000375820 CSB-PGBD3P0DP91 1061 aa17.38■□□□□ 0.37
COL4A1-201ENST00000375820 KIAA1211Q6ZU35 1233 aa17.38■□□□□ 0.37
COL4A1-201ENST00000375820 GGT6Q6P531 493 aa17.38■□□□□ 0.37
COL4A1-201ENST00000375820 RBM19Q9Y4C8 960 aaKnown RBP17.36■□□□□ 0.37
COL4A1-201ENST00000375820 L1TD1Q5T7N2 865 aaKnown RBP17.36■□□□□ 0.37
COL4A1-201ENST00000375820 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
COL4A1-201ENST00000375820 MFAP1P55081 439 aaKnown RBP17.35■□□□□ 0.37
COL4A1-201ENST00000375820 FOXD4L5Q5VV16 416 aaPredicted RBP17.35■□□□□ 0.37
COL4A1-201ENST00000375820 FOXD4L4Q8WXT5 416 aaPredicted RBP17.35■□□□□ 0.37
COL4A1-201ENST00000375820 HSPA5P11021 654 aaKnown RBP17.35■□□□□ 0.37
COL4A1-201ENST00000375820 NUTM2DQ5VT03 806 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-201ENST00000375820 CCDC9Q9Y3X0 531 aaKnown RBP17.34■□□□□ 0.37
COL4A1-201ENST00000375820 U2AF1L5P0DN76 240 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-201ENST00000375820 U2AF1Q01081 240 aaKnown RBP eCLIP17.34■□□□□ 0.37
COL4A1-201ENST00000375820 KIAA2012Q0VF49 1180 aa17.33■□□□□ 0.37
COL4A1-201ENST00000375820 CCNB3Q8WWL7 1395 aa17.32■□□□□ 0.36
COL4A1-201ENST00000375820 TRIM6-TRIM34B2RNG4 842 aa17.32■□□□□ 0.36
COL4A1-201ENST00000375820 CCDC146Q8IYE0 955 aa17.31■□□□□ 0.36
COL4A1-201ENST00000375820 GORABQ5T7V8 394 aa17.3■□□□□ 0.36
COL4A1-201ENST00000375820 SLC4A10Q6U841 1118 aa17.3■□□□□ 0.36
COL4A1-201ENST00000375820 CLUAP1Q96AJ1 413 aa17.29■□□□□ 0.36
COL4A1-201ENST00000375820 KANK1Q14678 1352 aa17.28■□□□□ 0.36
COL4A1-201ENST00000375820 NUTM2FA1L443 756 aa17.27■□□□□ 0.36
COL4A1-201ENST00000375820 HDGFL2Q7Z4V5 671 aaPredicted RBP17.27■□□□□ 0.35
COL4A1-201ENST00000375820 ERCC6Q03468 1493 aa17.26■□□□□ 0.35
COL4A1-201ENST00000375820 TAF7LQ5H9L4 462 aa17.26■□□□□ 0.35
COL4A1-201ENST00000375820 GBP4Q96PP9 640 aa17.26■□□□□ 0.35
COL4A1-201ENST00000375820 RASSF8Q8NHQ8 419 aa17.25■□□□□ 0.35
COL4A1-201ENST00000375820 RCAN3Q9UKA8 241 aa17.25■□□□□ 0.35
COL4A1-201ENST00000375820 A0A0U1RQG5 324 aaPredicted RBP17.25■□□□□ 0.35
COL4A1-201ENST00000375820 LTV1Q96GA3 475 aaPredicted RBP17.25■□□□□ 0.35
COL4A1-201ENST00000375820 WRNQ14191 1432 aaPredicted RBP eCLIP17.24■□□□□ 0.35
COL4A1-201ENST00000375820 PKD2Q13563 968 aa17.24■□□□□ 0.35
COL4A1-201ENST00000375820 KTN1Q86UP2 1357 aaKnown RBP17.24■□□□□ 0.35
COL4A1-201ENST00000375820 IPO8O15397 1037 aaKnown RBP17.23■□□□□ 0.35
COL4A1-201ENST00000375820 TOMM22Q9NS69 142 aa17.23■□□□□ 0.35
COL4A1-201ENST00000375820 FOXD4L6Q3SYB3 417 aaPredicted RBP17.23■□□□□ 0.35
COL4A1-201ENST00000375820 FOXD4L3Q6VB84 417 aaPredicted RBP17.23■□□□□ 0.35
COL4A1-201ENST00000375820 WWC1Q8IX03 1113 aa17.23■□□□□ 0.35
COL4A1-201ENST00000375820 VPS53Q5VIR6 699 aa17.23■□□□□ 0.35
COL4A1-201ENST00000375820 FBXO3Q9UK99 471 aa17.22■□□□□ 0.35
COL4A1-201ENST00000375820 KIF27Q86VH2 1401 aa17.22■□□□□ 0.35
COL4A1-201ENST00000375820 SMC4Q9NTJ3 1288 aa17.22■□□□□ 0.35
COL4A1-201ENST00000375820 RWDD1Q9H446 243 aaPredicted RBP17.21■□□□□ 0.34
COL4A1-201ENST00000375820 ROCK2O75116 1388 aaKnown RBP17.2■□□□□ 0.34
COL4A1-201ENST00000375820 G3V3G9 751 aa17.2■□□□□ 0.34
COL4A1-201ENST00000375820 DCAF8Q5TAQ9 597 aa17.2■□□□□ 0.34
COL4A1-201ENST00000375820 CCDC180Q9P1Z9 1646 aa17.19■□□□□ 0.34
COL4A1-201ENST00000375820 HDGFP51858 240 aaKnown RBP17.19■□□□□ 0.34
COL4A1-201ENST00000375820 TMX4Q9H1E5 349 aaPredicted RBP17.18■□□□□ 0.34
COL4A1-201ENST00000375820 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL4A1-201ENST00000375820 STK31Q9BXU1 1019 aa17.17■□□□□ 0.34
COL4A1-201ENST00000375820 TNNT3P45378 269 aaPredicted RBP17.17■□□□□ 0.34
COL4A1-201ENST00000375820 PES1O00541 588 aaKnown RBP17.17■□□□□ 0.34
COL4A1-201ENST00000375820 RRP7AQ9Y3A4 280 aaKnown RBP17.17■□□□□ 0.34
COL4A1-201ENST00000375820 GOLGA6L3A6NEY3 463 aa17.16■□□□□ 0.34
COL4A1-201ENST00000375820 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.16■□□□□ 0.34
COL4A1-201ENST00000375820 FRAT2O75474 233 aaPredicted RBP17.15■□□□□ 0.34
COL4A1-201ENST00000375820 TPM4P67936 248 aa17.15■□□□□ 0.34
COL4A1-201ENST00000375820 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
COL4A1-201ENST00000375820 SLC4A3P48751 1232 aa17.14■□□□□ 0.33
COL4A1-201ENST00000375820 EEA1Q15075 1411 aa17.14■□□□□ 0.33
COL4A1-201ENST00000375820 TNIKQ9UKE5 1360 aa17.13■□□□□ 0.33
COL4A1-201ENST00000375820 BAZ1BQ9UIG0 1483 aaKnown RBP17.13■□□□□ 0.33
COL4A1-201ENST00000375820 GPATCH3Q96I76 525 aa17.13■□□□□ 0.33
COL4A1-201ENST00000375820 SPAG9O60271 1321 aaKnown RBP17.13■□□□□ 0.33
COL4A1-201ENST00000375820 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
COL4A1-201ENST00000375820 SYAP1Q96A49 352 aaPredicted RBP17.13■□□□□ 0.33
COL4A1-201ENST00000375820 ELL2O00472 640 aaPredicted RBP17.12■□□□□ 0.33
COL4A1-201ENST00000375820 MARCH6O60337 910 aa17.11■□□□□ 0.33
COL4A1-201ENST00000375820 BCL2L13Q9BXK5 485 aa17.11■□□□□ 0.33
COL4A1-201ENST00000375820 CALD1Q05682 793 aaKnown RBP17.11■□□□□ 0.33
COL4A1-201ENST00000375820 CFAP44Q96MT7 982 aa17.11■□□□□ 0.33
COL4A1-201ENST00000375820 RAD21O60216 631 aa17.1■□□□□ 0.33
COL4A1-201ENST00000375820 CCER2I3L3R5 266 aa17.09■□□□□ 0.33
COL4A1-201ENST00000375820 RILPL2Q969X0 211 aa17.09■□□□□ 0.33
COL4A1-201ENST00000375820 NGEFQ8N5V2 710 aa17.09■□□□□ 0.33
COL4A1-201ENST00000375820 PMFBP1Q8TBY8 1022 aa17.09■□□□□ 0.33
COL4A1-201ENST00000375820 GOLGA6L1Q8N7Z2 621 aa17.09■□□□□ 0.33
COL4A1-201ENST00000375820 PATL2C9JE40 543 aaKnown RBP17.08■□□□□ 0.33
COL4A1-201ENST00000375820 GTF2E1P29083 439 aaPredicted RBP17.08■□□□□ 0.33
COL4A1-201ENST00000375820 CCAR2Q8N163 923 aaKnown RBP17.08■□□□□ 0.33
COL4A1-201ENST00000375820 NGDNQ8NEJ9 315 aaKnown RBP17.08■□□□□ 0.32
COL4A1-201ENST00000375820 KANK4Q5T7N3 995 aaPredicted RBP17.08■□□□□ 0.32
COL4A1-201ENST00000375820 AMPHP49418 695 aa17.07■□□□□ 0.32
COL4A1-201ENST00000375820 SF3A1Q15459 793 aaKnown RBP17.07■□□□□ 0.32
COL4A1-201ENST00000375820 SETD5Q9C0A6 1442 aa17.07■□□□□ 0.32
COL4A1-201ENST00000375820 PLIN1O60240 522 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms