RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 EHBP1L1Q8N3D4 1523 aa19.73■□□□□ 0.75
CLCNKA-202ENST00000375692 UACAQ9BZF9 1416 aa19.72■□□□□ 0.75
CLCNKA-202ENST00000375692 CDK11AQ9UQ88 783 aaPredicted RBP19.72■□□□□ 0.75
CLCNKA-202ENST00000375692 IRX6P78412 446 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-202ENST00000375692 HNRNPUQ00839 825 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLCNKA-202ENST00000375692 PLEKHD1A6NEE1 506 aa19.69■□□□□ 0.74
CLCNKA-202ENST00000375692 HFM1A2PYH4 1435 aa19.68■□□□□ 0.74
CLCNKA-202ENST00000375692 SUPT6HQ7KZ85 1726 aaKnown RBP19.67■□□□□ 0.74
CLCNKA-202ENST00000375692 MYOM3Q5VTT5 1437 aa19.67■□□□□ 0.74
CLCNKA-202ENST00000375692 ARHGEF11O15085 1522 aa19.65■□□□□ 0.74
CLCNKA-202ENST00000375692 PTPN23Q9H3S7 1636 aa19.65■□□□□ 0.74
CLCNKA-202ENST00000375692 TROQ12816 1431 aaPredicted RBP19.65■□□□□ 0.74
CLCNKA-202ENST00000375692 NAIPQ13075 1403 aa19.65■□□□□ 0.74
CLCNKA-202ENST00000375692 ZNF644Q9H582 1327 aaPredicted RBP19.63■□□□□ 0.73
CLCNKA-202ENST00000375692 MSH5O43196 834 aa19.62■□□□□ 0.73
CLCNKA-202ENST00000375692 RRP7BPQ9NSQ0 103 aa19.62■□□□□ 0.73
CLCNKA-202ENST00000375692 WASHC2AQ641Q2 1341 aa19.61■□□□□ 0.73
CLCNKA-202ENST00000375692 HSPA5P11021 654 aaKnown RBP19.61■□□□□ 0.73
CLCNKA-202ENST00000375692 CHIC2Q9UKJ5 165 aa19.61■□□□□ 0.73
CLCNKA-202ENST00000375692 KDM5BQ9UGL1 1544 aa19.61■□□□□ 0.73
CLCNKA-202ENST00000375692 ABCC2Q92887 1545 aa19.6■□□□□ 0.73
CLCNKA-202ENST00000375692 KIF14Q15058 1648 aa19.6■□□□□ 0.73
CLCNKA-202ENST00000375692 CCDC184Q52MB2 194 aa19.57■□□□□ 0.72
CLCNKA-202ENST00000375692 BCL11AQ9H165 835 aa19.57■□□□□ 0.72
CLCNKA-202ENST00000375692 ZNF777Q9ULD5 760 aaPredicted RBP19.56■□□□□ 0.72
CLCNKA-202ENST00000375692 CFDP1Q9UEE9 299 aaPredicted RBP19.54■□□□□ 0.72
CLCNKA-202ENST00000375692 GPATCH8Q9UKJ3 1502 aaKnown RBP19.52■□□□□ 0.72
CLCNKA-202ENST00000375692 UHRF1BP1LA0JNW5 1464 aa19.51■□□□□ 0.71
CLCNKA-202ENST00000375692 ADCY10Q96PN6 1610 aa19.51■□□□□ 0.71
CLCNKA-202ENST00000375692 C11orf95C9JLR9 678 aaPredicted RBP19.5■□□□□ 0.71
CLCNKA-202ENST00000375692 EIF4G2P78344 907 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLCNKA-202ENST00000375692 FOXD1Q16676 465 aa19.5■□□□□ 0.71
CLCNKA-202ENST00000375692 MIA2Q96PC5 1412 aa19.49■□□□□ 0.71
CLCNKA-202ENST00000375692 DENND4BO75064 1496 aaPredicted RBP19.49■□□□□ 0.71
CLCNKA-202ENST00000375692 CYB5RLQ6IPT4 315 aa19.48■□□□□ 0.71
CLCNKA-202ENST00000375692 ABCC10Q5T3U5 1492 aa19.48■□□□□ 0.71
CLCNKA-202ENST00000375692 ZCCHC11Q5TAX3 1644 aaKnown RBP19.48■□□□□ 0.71
CLCNKA-202ENST00000375692 FAM9BQ8IZU0 186 aa19.47■□□□□ 0.71
CLCNKA-202ENST00000375692 L3MBTL2Q969R5 705 aa19.47■□□□□ 0.71
CLCNKA-202ENST00000375692 TCOF1Q13428 1488 aaKnown RBP19.47■□□□□ 0.71
CLCNKA-202ENST00000375692 MPHOSPH9Q99550 1183 aa19.45■□□□□ 0.7
CLCNKA-202ENST00000375692 FANCIQ9NVI1 1328 aa19.44■□□□□ 0.7
CLCNKA-202ENST00000375692 KDM6BO15054 1643 aa19.44■□□□□ 0.7
CLCNKA-202ENST00000375692 CNTLNQ9NXG0 1405 aa19.42■□□□□ 0.7
CLCNKA-202ENST00000375692 PRKRIP1Q9H875 184 aaPredicted RBP19.42■□□□□ 0.7
CLCNKA-202ENST00000375692 PPP4R2Q9NY27 417 aa19.41■□□□□ 0.7
CLCNKA-202ENST00000375692 MRS2Q9HD23 443 aa19.4■□□□□ 0.7
CLCNKA-202ENST00000375692 HNRNPMP52272 730 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLCNKA-202ENST00000375692 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLCNKA-202ENST00000375692 CDC42BPAQ5VT25 1732 aa19.39■□□□□ 0.7
CLCNKA-202ENST00000375692 CAMSAP2Q08AD1 1489 aa19.39■□□□□ 0.7
CLCNKA-202ENST00000375692 NPM1P06748 294 aaKnown RBP eCLIP19.39■□□□□ 0.69
CLCNKA-202ENST00000375692 B4GALNT3Q6L9W6 998 aa19.39■□□□□ 0.69
CLCNKA-202ENST00000375692 TTC37Q6PGP7 1564 aa19.39■□□□□ 0.69
CLCNKA-202ENST00000375692 ABCC5O15440 1437 aa19.39■□□□□ 0.69
CLCNKA-202ENST00000375692 CCDC7Q96M83 1385 aa19.38■□□□□ 0.69
CLCNKA-202ENST00000375692 NBPF8Q3BBV2 869 aa19.38■□□□□ 0.69
CLCNKA-202ENST00000375692 ERICH6Q7L0X2 663 aa19.37■□□□□ 0.69
CLCNKA-202ENST00000375692 DAPK1P53355 1430 aa19.36■□□□□ 0.69
CLCNKA-202ENST00000375692 ASXL2Q76L83 1435 aa19.36■□□□□ 0.69
CLCNKA-202ENST00000375692 ERICH6BQ5W0A0 696 aa19.36■□□□□ 0.69
CLCNKA-202ENST00000375692 NCOA1Q15788 1441 aa19.35■□□□□ 0.69
CLCNKA-202ENST00000375692 ITSN2Q9NZM3 1697 aa19.34■□□□□ 0.69
CLCNKA-202ENST00000375692 CNGB1Q14028 1251 aaPredicted RBP19.34■□□□□ 0.69
CLCNKA-202ENST00000375692 GCC2Q8IWJ2 1684 aa19.34■□□□□ 0.69
CLCNKA-202ENST00000375692 WDR7Q9Y4E6 1490 aa19.33■□□□□ 0.69
CLCNKA-202ENST00000375692 RIMBP3CA6NJZ7 1639 aa19.33■□□□□ 0.69
CLCNKA-202ENST00000375692 RIMBP3BA6NNM3 1639 aa19.33■□□□□ 0.69
CLCNKA-202ENST00000375692 RIMBP3Q9UFD9 1639 aa19.33■□□□□ 0.69
CLCNKA-202ENST00000375692 CDC42BPBQ9Y5S2 1711 aa19.32■□□□□ 0.68
CLCNKA-202ENST00000375692 ZBED9Q6R2W3 1325 aa19.31■□□□□ 0.68
CLCNKA-202ENST00000375692 KIF7Q2M1P5 1343 aa19.3■□□□□ 0.68
CLCNKA-202ENST00000375692 ARHGAP5Q13017 1502 aa19.3■□□□□ 0.68
CLCNKA-202ENST00000375692 DNMT1P26358 1616 aaKnown RBP19.29■□□□□ 0.68
CLCNKA-202ENST00000375692 AKNAQ7Z591 1439 aa19.28■□□□□ 0.68
CLCNKA-202ENST00000375692 ANKRD30BQ9BXX2 1392 aa19.28■□□□□ 0.68
CLCNKA-202ENST00000375692 PLCH2O75038 1416 aa19.28■□□□□ 0.68
CLCNKA-202ENST00000375692 PREX2Q70Z35 1606 aa19.27■□□□□ 0.68
CLCNKA-202ENST00000375692 SAMD9LQ8IVG5 1584 aa19.27■□□□□ 0.68
CLCNKA-202ENST00000375692 MBD5Q9P267 1494 aa19.26■□□□□ 0.67
CLCNKA-202ENST00000375692 SENP3-EIF4A1A0A087X0R7 540 aa19.25■□□□□ 0.67
CLCNKA-202ENST00000375692 EFCAB2Q5VUJ9 269 aa19.25■□□□□ 0.67
CLCNKA-202ENST00000375692 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
CLCNKA-202ENST00000375692 TSPY4P0CV99 314 aa19.24■□□□□ 0.67
CLCNKA-202ENST00000375692 TSPY10P0CW01 314 aa19.24■□□□□ 0.67
CLCNKA-202ENST00000375692 RPRD2Q5VT52 1461 aaKnown RBP19.24■□□□□ 0.67
CLCNKA-202ENST00000375692 SPATA31E1Q6ZUB1 1445 aa19.23■□□□□ 0.67
CLCNKA-202ENST00000375692 POLR3GLQ9BT43 218 aa19.23■□□□□ 0.67
CLCNKA-202ENST00000375692 MYO5CQ9NQX4 1742 aa19.22■□□□□ 0.67
CLCNKA-202ENST00000375692 ARHGEF12Q9NZN5 1544 aa19.22■□□□□ 0.67
CLCNKA-202ENST00000375692 TEX14Q8IWB6 1497 aa19.22■□□□□ 0.67
CLCNKA-202ENST00000375692 SYCP2Q9BX26 1530 aa19.22■□□□□ 0.67
CLCNKA-202ENST00000375692 ROCK1Q13464 1354 aa19.21■□□□□ 0.67
CLCNKA-202ENST00000375692 C9orf84Q5VXU9 1444 aa19.2■□□□□ 0.66
CLCNKA-202ENST00000375692 AFAP1Q8N556 730 aa19.19■□□□□ 0.66
CLCNKA-202ENST00000375692 ZNF326Q5BKZ1 582 aaKnown RBP19.18■□□□□ 0.66
CLCNKA-202ENST00000375692 ANKRD30AQ9BXX3 1397 aa19.17■□□□□ 0.66
CLCNKA-202ENST00000375692 TRAPPC8Q9Y2L5 1435 aa19.16■□□□□ 0.66
CLCNKA-202ENST00000375692 CCDC141Q6ZP82 1450 aa19.15■□□□□ 0.66
CLCNKA-202ENST00000375692 ABCA9Q8IUA7 1624 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms