RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FGD6Q6ZV73 1430 aa8.51□□□□□ -1.05
SMC1A-202ENST00000375340 CADPSQ9ULU8 1353 aa8.51□□□□□ -1.05
SMC1A-202ENST00000375340 PCF11O94913 1555 aaKnown RBP8.51□□□□□ -1.05
SMC1A-202ENST00000375340 TMF1P82094 1093 aa8.51□□□□□ -1.05
SMC1A-202ENST00000375340 CCDC146Q8IYE0 955 aa8.51□□□□□ -1.05
SMC1A-202ENST00000375340 NUP155O75694 1391 aa8.51□□□□□ -1.05
SMC1A-202ENST00000375340 MYH16Q9H6N6 1097 aa8.5□□□□□ -1.05
SMC1A-202ENST00000375340 PLIN1O60240 522 aa8.5□□□□□ -1.05
SMC1A-202ENST00000375340 IPO9Q96P70 1041 aaKnown RBP8.5□□□□□ -1.05
SMC1A-202ENST00000375340 NCLP19338 710 aaKnown RBP8.5□□□□□ -1.05
SMC1A-202ENST00000375340 PLEKHG5O94827 1062 aa8.49□□□□□ -1.05
SMC1A-202ENST00000375340 IGF1RP08069 1367 aa8.49□□□□□ -1.05
SMC1A-202ENST00000375340 NAP1L5Q96NT1 182 aaPredicted RBP8.48□□□□□ -1.05
SMC1A-202ENST00000375340 HNRNPMP52272 730 aaKnown RBP eCLIP8.48□□□□□ -1.05
SMC1A-202ENST00000375340 CNTLNQ9NXG0 1405 aa8.48□□□□□ -1.05
SMC1A-202ENST00000375340 USP47Q96K76 1375 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 NCOA2Q15596 1464 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 ZBTB7CA1YPR0 619 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 EXOC6Q8TAG9 804 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 ANKRD30AQ9BXX3 1397 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 ERICH6BQ5W0A0 696 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 CFAP53Q96M91 514 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 PRKRIP1Q9H875 184 aaPredicted RBP8.47□□□□□ -1.05
SMC1A-202ENST00000375340 KIF15Q9NS87 1388 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 SLC4A3P48751 1232 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 RALBP1Q15311 655 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 ZBED9Q6R2W3 1325 aa8.47□□□□□ -1.05
SMC1A-202ENST00000375340 CDCA8Q53HL2 280 aa8.46□□□□□ -1.05
SMC1A-202ENST00000375340 FYCO1Q9BQS8 1478 aa8.46□□□□□ -1.05
SMC1A-202ENST00000375340 SUPT6HQ7KZ85 1726 aaKnown RBP8.46□□□□□ -1.05
SMC1A-202ENST00000375340 SAFB2Q14151 953 aaKnown RBP eCLIP8.46□□□□□ -1.05
SMC1A-202ENST00000375340 MYOM3Q5VTT5 1437 aa8.46□□□□□ -1.06
SMC1A-202ENST00000375340 WASHC2AQ641Q2 1341 aa8.46□□□□□ -1.06
SMC1A-202ENST00000375340 U2SURPO15042 1029 aaKnown RBP8.46□□□□□ -1.06
SMC1A-202ENST00000375340 GLIPR1L2Q4G1C9 344 aa8.45□□□□□ -1.06
SMC1A-202ENST00000375340 ESF1Q9H501 851 aaKnown RBP8.45□□□□□ -1.06
SMC1A-202ENST00000375340 UACAQ9BZF9 1416 aa8.45□□□□□ -1.06
SMC1A-202ENST00000375340 NPM1P06748 294 aaKnown RBP eCLIP8.45□□□□□ -1.06
SMC1A-202ENST00000375340 TRIM44Q96DX7 344 aaPredicted RBP8.45□□□□□ -1.06
SMC1A-202ENST00000375340 CASKIN1Q8WXD9 1431 aa8.45□□□□□ -1.06
SMC1A-202ENST00000375340 PDS5BQ9NTI5 1447 aa8.44□□□□□ -1.06
SMC1A-202ENST00000375340 SLKQ9H2G2 1235 aaPredicted RBP8.44□□□□□ -1.06
SMC1A-202ENST00000375340 CCDC7Q96M83 1385 aa8.44□□□□□ -1.06
SMC1A-202ENST00000375340 HSP90AB1P08238 724 aaKnown RBP8.44□□□□□ -1.06
SMC1A-202ENST00000375340 TCERG1O14776 1098 aaKnown RBP8.44□□□□□ -1.06
SMC1A-202ENST00000375340 KIF7Q2M1P5 1343 aa8.44□□□□□ -1.06
SMC1A-202ENST00000375340 MYBBP1AQ9BQG0 1328 aaKnown RBP8.44□□□□□ -1.06
SMC1A-202ENST00000375340 MAPK8IP3Q9UPT6 1336 aa8.44□□□□□ -1.06
SMC1A-202ENST00000375340 CFTRP13569 1480 aa8.44□□□□□ -1.06
SMC1A-202ENST00000375340 RRP1P56182 461 aaKnown RBP8.43□□□□□ -1.06
SMC1A-202ENST00000375340 ZNF644Q9H582 1327 aaPredicted RBP8.43□□□□□ -1.06
SMC1A-202ENST00000375340 FANCIQ9NVI1 1328 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 GZF1Q9H116 711 aaPredicted RBP8.43□□□□□ -1.06
SMC1A-202ENST00000375340 ST20-MTHFSA0A0A6YYL1 179 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 CRBNQ96SW2 442 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 MORC1Q86VD1 984 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 GAPVD1Q14C86 1478 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 AKNAQ7Z591 1439 aa8.43□□□□□ -1.06
SMC1A-202ENST00000375340 PRXQ9BXM0 1461 aa8.42□□□□□ -1.06
SMC1A-202ENST00000375340 ARID4BQ4LE39 1312 aaPredicted RBP8.42□□□□□ -1.06
SMC1A-202ENST00000375340 BIVM-ERCC5R4GMW8 1640 aa8.42□□□□□ -1.06
SMC1A-202ENST00000375340 EHBP1L1Q8N3D4 1523 aa8.41□□□□□ -1.06
SMC1A-202ENST00000375340 KANK1Q14678 1352 aa8.41□□□□□ -1.06
SMC1A-202ENST00000375340 PANK3Q9H999 370 aa8.41□□□□□ -1.06
SMC1A-202ENST00000375340 NUTM2DQ5VT03 806 aaPredicted RBP8.41□□□□□ -1.06
SMC1A-202ENST00000375340 PDE4AP27815 886 aa8.4□□□□□ -1.06
SMC1A-202ENST00000375340 HSCBQ8IWL3 235 aa8.4□□□□□ -1.06
SMC1A-202ENST00000375340 PTPN23Q9H3S7 1636 aa8.4□□□□□ -1.06
SMC1A-202ENST00000375340 C14orf37Q86TY3 774 aa8.4□□□□□ -1.06
SMC1A-202ENST00000375340 CARMIL2Q6F5E8 1435 aa8.4□□□□□ -1.06
SMC1A-202ENST00000375340 CCDC184Q52MB2 194 aa8.4□□□□□ -1.07
SMC1A-202ENST00000375340 BICRAQ9NZM4 1560 aa8.4□□□□□ -1.07
SMC1A-202ENST00000375340 HECW1Q76N89 1606 aa8.4□□□□□ -1.07
SMC1A-202ENST00000375340 RRP7AQ9Y3A4 280 aaKnown RBP8.4□□□□□ -1.07
SMC1A-202ENST00000375340 NESP48681 1621 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 ITPRIPQ8IWB1 547 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 GOLGA6L22H0YM25 854 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 POGKQ9P215 609 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 STK26Q9P289 416 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 EFCAB5A4FU69 1503 aa8.39□□□□□ -1.07
SMC1A-202ENST00000375340 MFAP1P55081 439 aaKnown RBP8.38□□□□□ -1.07
SMC1A-202ENST00000375340 CASC1Q6TDU7 716 aa8.38□□□□□ -1.07
SMC1A-202ENST00000375340 FOXD4L1Q9NU39 408 aa8.38□□□□□ -1.07
SMC1A-202ENST00000375340 CCDC144AA2RUR9 1427 aa8.37□□□□□ -1.07
SMC1A-202ENST00000375340 PTMAP06454 111 aaKnown RBP8.37□□□□□ -1.07
SMC1A-202ENST00000375340 NLRP13Q86W25 1043 aa8.37□□□□□ -1.07
SMC1A-202ENST00000375340 CDK13Q14004 1512 aaKnown RBP8.37□□□□□ -1.07
SMC1A-202ENST00000375340 SRPK2P78362 688 aaKnown RBP8.37□□□□□ -1.07
SMC1A-202ENST00000375340 AQRO60306 1485 aaKnown RBP eCLIP8.37□□□□□ -1.078e-8■■■□□ 17
SMC1A-202ENST00000375340 MAPKBP1O60336 1514 aa8.37□□□□□ -1.07
SMC1A-202ENST00000375340 APBB1O00213 710 aa8.37□□□□□ -1.07
SMC1A-202ENST00000375340 CC2D2AQ9P2K1 1620 aa8.37□□□□□ -1.07
SMC1A-202ENST00000375340 CLUAP1Q96AJ1 413 aa8.36□□□□□ -1.07
SMC1A-202ENST00000375340 EIF3AQ14152 1382 aaKnown RBP8.36□□□□□ -1.07
SMC1A-202ENST00000375340 GOLGA2Q08379 1002 aa8.36□□□□□ -1.07
SMC1A-202ENST00000375340 MSH5O43196 834 aa8.36□□□□□ -1.07
SMC1A-202ENST00000375340 SOX12O15370 315 aa8.35□□□□□ -1.07
SMC1A-202ENST00000375340 L1TD1Q5T7N2 865 aaKnown RBP8.35□□□□□ -1.07
SMC1A-202ENST00000375340 NCAPD3P42695 1498 aa8.35□□□□□ -1.07
SMC1A-202ENST00000375340 HMGXB3Q12766 1538 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms