RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 FMN1Q68DA7 1419 aa23.39■■□□□ 1.33
PTCH1-202ENST00000375271 SCAPERQ9BY12 1400 aa23.39■■□□□ 1.33
PTCH1-202ENST00000375271 YEATS2Q9ULM3 1422 aa23.39■■□□□ 1.33
PTCH1-202ENST00000375271 FER1L4A9Z1Z3 1794 aa23.38■■□□□ 1.33
PTCH1-202ENST00000375271 PLCH2O75038 1416 aa23.36■■□□□ 1.33
PTCH1-202ENST00000375271 HSPA2P54652 639 aa23.36■■□□□ 1.33
PTCH1-202ENST00000375271 MYT1LQ9UL68 1186 aa23.36■■□□□ 1.33
PTCH1-202ENST00000375271 MYO5CQ9NQX4 1742 aa23.36■■□□□ 1.33
PTCH1-202ENST00000375271 EFCAB2Q5VUJ9 269 aa23.35■■□□□ 1.33
PTCH1-202ENST00000375271 KIF14Q15058 1648 aa23.32■■□□□ 1.32
PTCH1-202ENST00000375271 CLIP1P30622 1438 aa23.32■■□□□ 1.32
PTCH1-202ENST00000375271 C9orf84Q5VXU9 1444 aa23.31■■□□□ 1.32
PTCH1-202ENST00000375271 ATP10AO60312 1499 aa23.3■■□□□ 1.32
PTCH1-202ENST00000375271 ARHGAP5Q13017 1502 aa23.28■■□□□ 1.32
PTCH1-202ENST00000375271 SIGLEC1Q9BZZ2 1709 aa23.28■■□□□ 1.32
PTCH1-202ENST00000375271 ZNF518AQ6AHZ1 1483 aa23.27■■□□□ 1.32
PTCH1-202ENST00000375271 PREX1Q8TCU6 1659 aa23.23■■□□□ 1.31
PTCH1-202ENST00000375271 TROQ12816 1431 aaPredicted RBP23.23■■□□□ 1.31
PTCH1-202ENST00000375271 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
PTCH1-202ENST00000375271 ARHGEF12Q9NZN5 1544 aa23.23■■□□□ 1.31
PTCH1-202ENST00000375271 ESF1Q9H501 851 aaKnown RBP23.22■■□□□ 1.31
PTCH1-202ENST00000375271 CERKQ8TCT0 537 aa23.2■■□□□ 1.3
PTCH1-202ENST00000375271 DMRT2Q9Y5R5 561 aa23.17■■□□□ 1.3
PTCH1-202ENST00000375271 UHRF1BP1Q6BDS2 1440 aa23.16■■□□□ 1.3
PTCH1-202ENST00000375271 AFAP1Q8N556 730 aa23.16■■□□□ 1.3
PTCH1-202ENST00000375271 CEBPAP49715 358 aaPredicted RBP23.15■■□□□ 1.3
PTCH1-202ENST00000375271 KDM5CP41229 1560 aa23.14■■□□□ 1.3
PTCH1-202ENST00000375271 CCDC18Q5T9S5 1454 aa23.11■■□□□ 1.29
PTCH1-202ENST00000375271 DIP2CQ9Y2E4 1556 aa23.1■■□□□ 1.29
PTCH1-202ENST00000375271 PREX2Q70Z35 1606 aa23.08■■□□□ 1.29
PTCH1-202ENST00000375271 CDC42BPBQ9Y5S2 1711 aa23.08■■□□□ 1.28
PTCH1-202ENST00000375271 REREQ9P2R6 1566 aa23.07■■□□□ 1.28
PTCH1-202ENST00000375271 LRRIQ1Q96JM4 1722 aa23.07■■□□□ 1.28
PTCH1-202ENST00000375271 MLH3Q9UHC1 1453 aa23.06■■□□□ 1.28
PTCH1-202ENST00000375271 ABCA6Q8N139 1617 aa23.06■■□□□ 1.28
PTCH1-202ENST00000375271 SETD1BQ9UPS6 1966 aaKnown RBP23.06■■□□□ 1.28
PTCH1-202ENST00000375271 ABCC1P33527 1531 aa23.05■■□□□ 1.28
PTCH1-202ENST00000375271 ITSN2Q9NZM3 1697 aa23.03■■□□□ 1.28
PTCH1-202ENST00000375271 CASKIN1Q8WXD9 1431 aa23.03■■□□□ 1.28
PTCH1-202ENST00000375271 CHIC1Q5VXU3 224 aa23.02■■□□□ 1.28
PTCH1-202ENST00000375271 C3P01024 1663 aa23.02■■□□□ 1.28
PTCH1-202ENST00000375271 ZNF777Q9ULD5 760 aaPredicted RBP23.01■■□□□ 1.27
PTCH1-202ENST00000375271 CNTLNQ9NXG0 1405 aa23■■□□□ 1.27
PTCH1-202ENST00000375271 TRAPPC8Q9Y2L5 1435 aa23■■□□□ 1.27
PTCH1-202ENST00000375271 AGLP35573 1532 aa23■■□□□ 1.27
PTCH1-202ENST00000375271 STRCQ7RTU9 1775 aa22.99■■□□□ 1.27
PTCH1-202ENST00000375271 FYCO1Q9BQS8 1478 aa22.97■■□□□ 1.27
PTCH1-202ENST00000375271 CDC42BPAQ5VT25 1732 aa22.96■■□□□ 1.27
PTCH1-202ENST00000375271 PTPRTO14522 1441 aa22.94■■□□□ 1.26
PTCH1-202ENST00000375271 DISP3Q9P2K9 1392 aa22.94■■□□□ 1.26
PTCH1-202ENST00000375271 KIDINS220Q9ULH0 1771 aa22.94■■□□□ 1.26
PTCH1-202ENST00000375271 SPAG9O60271 1321 aaKnown RBP22.93■■□□□ 1.26
PTCH1-202ENST00000375271 SYCP2Q9BX26 1530 aa22.9■■□□□ 1.26
PTCH1-202ENST00000375271 SAMD9LQ8IVG5 1584 aa22.89■■□□□ 1.26
PTCH1-202ENST00000375271 MROH2AA6NES4 1674 aa22.87■■□□□ 1.25
PTCH1-202ENST00000375271 PLEKHH2Q8IVE3 1493 aa22.87■■□□□ 1.25
PTCH1-202ENST00000375271 SUPT6HQ7KZ85 1726 aaKnown RBP22.87■■□□□ 1.25
PTCH1-202ENST00000375271 NPATQ14207 1427 aa22.86■■□□□ 1.25
PTCH1-202ENST00000375271 CFDP1Q9UEE9 299 aaPredicted RBP22.86■■□□□ 1.25
PTCH1-202ENST00000375271 CCNB3Q8WWL7 1395 aa22.86■■□□□ 1.25
PTCH1-202ENST00000375271 NCOA1Q15788 1441 aa22.85■■□□□ 1.25
PTCH1-202ENST00000375271 HNRNPMP52272 730 aaKnown RBP eCLIP22.85■■□□□ 1.25
PTCH1-202ENST00000375271 ATP7AQ04656 1500 aa22.84■■□□□ 1.25
PTCH1-202ENST00000375271 CAMSAP1Q5T5Y3 1602 aa22.83■■□□□ 1.25
PTCH1-202ENST00000375271 MTUS2Q5JR59 1369 aa22.83■■□□□ 1.25
PTCH1-202ENST00000375271 GPATCH8Q9UKJ3 1502 aaKnown RBP22.82■■□□□ 1.24
PTCH1-202ENST00000375271 ZMYM3Q14202 1370 aa22.82■■□□□ 1.24
PTCH1-202ENST00000375271 IQSEC2Q5JU85 1478 aa22.8■■□□□ 1.24
PTCH1-202ENST00000375271 CLTCQ00610 1675 aaKnown RBP22.8■■□□□ 1.24
PTCH1-202ENST00000375271 A2MP01023 1474 aa22.79■■□□□ 1.24
PTCH1-202ENST00000375271 GGT6Q6P531 493 aa22.79■■□□□ 1.24
PTCH1-202ENST00000375271 KIAA1107Q9UPP5 1409 aa22.79■■□□□ 1.24
PTCH1-202ENST00000375271 SPATA31D1Q6ZQQ2 1576 aa22.78■■□□□ 1.24
PTCH1-202ENST00000375271 INO80Q9ULG1 1556 aaPredicted RBP22.76■■□□□ 1.23
PTCH1-202ENST00000375271 LTBP4Q8N2S1 1624 aa22.75■■□□□ 1.23
PTCH1-202ENST00000375271 MYO3AQ8NEV4 1616 aa22.75■■□□□ 1.23
PTCH1-202ENST00000375271 PLXNC1O60486 1568 aa22.74■■□□□ 1.23
PTCH1-202ENST00000375271 NCKAP5LQ9HCH0 1330 aa22.74■■□□□ 1.23
PTCH1-202ENST00000375271 ADGBQ8N7X0 1667 aa22.74■■□□□ 1.23
PTCH1-202ENST00000375271 PKD2Q13563 968 aa22.73■■□□□ 1.23
PTCH1-202ENST00000375271 ZNF142P52746 1687 aaPredicted RBP22.72■■□□□ 1.23
PTCH1-202ENST00000375271 CEP170BQ9Y4F5 1589 aaPredicted RBP22.72■■□□□ 1.23
PTCH1-202ENST00000375271 SOCS7O14512 581 aa22.7■■□□□ 1.22
PTCH1-202ENST00000375271 PPP6R1Q9UPN7 881 aa22.7■■□□□ 1.22
PTCH1-202ENST00000375271 PLA2R1Q13018 1463 aa22.7■■□□□ 1.22
PTCH1-202ENST00000375271 EHBP1L1Q8N3D4 1523 aa22.69■■□□□ 1.22
PTCH1-202ENST00000375271 UBAP1LF5GYI3 381 aa22.69■■□□□ 1.22
PTCH1-202ENST00000375271 ILDR2Q71H61 639 aa22.69■■□□□ 1.22
PTCH1-202ENST00000375271 ZNF335Q9H4Z2 1342 aaPredicted RBP22.68■■□□□ 1.22
PTCH1-202ENST00000375271 PTPRKQ15262 1439 aa22.67■■□□□ 1.22
PTCH1-202ENST00000375271 TIAM1Q13009 1591 aa22.65■■□□□ 1.22
PTCH1-202ENST00000375271 ZNF644Q9H582 1327 aaPredicted RBP22.61■■□□□ 1.21
PTCH1-202ENST00000375271 TCOF1Q13428 1488 aaKnown RBP22.61■■□□□ 1.21
PTCH1-202ENST00000375271 RTEL1-TNFRSF6BF6WH68 1400 aa22.61■■□□□ 1.21
PTCH1-202ENST00000375271 A2ML1A8K2U0 1454 aa22.6■■□□□ 1.21
PTCH1-202ENST00000375271 SCAF1Q9H7N4 1312 aaKnown RBP22.6■■□□□ 1.21
PTCH1-202ENST00000375271 KIF3BO15066 747 aa22.59■■□□□ 1.21
PTCH1-202ENST00000375271 CEP162Q5TB80 1403 aa22.58■■□□□ 1.21
PTCH1-202ENST00000375271 DHX29Q7Z478 1369 aaKnown RBP22.58■■□□□ 1.21
PTCH1-202ENST00000375271 TNRQ92752 1358 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms