RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 FAM50AQ14320 339 aaKnown RBP12.69□□□□□ -0.38
SNRNP40-202ENST00000373720 JPH4Q96JJ6 628 aa12.68□□□□□ -0.38
SNRNP40-202ENST00000373720 CEP170Q5SW79 1584 aa12.67□□□□□ -0.38
SNRNP40-202ENST00000373720 ROCK1Q13464 1354 aa12.67□□□□□ -0.38
SNRNP40-202ENST00000373720 DIEXFQ68CQ4 756 aaKnown RBP12.66□□□□□ -0.38
SNRNP40-202ENST00000373720 PTPN23Q9H3S7 1636 aa12.66□□□□□ -0.38
SNRNP40-202ENST00000373720 LRRIQ1Q96JM4 1722 aa12.65□□□□□ -0.38
SNRNP40-202ENST00000373720 UACAQ9BZF9 1416 aa12.65□□□□□ -0.38
SNRNP40-202ENST00000373720 TROQ12816 1431 aaPredicted RBP12.64□□□□□ -0.39
SNRNP40-202ENST00000373720 NUP153P49790 1475 aaKnown RBP12.64□□□□□ -0.39
SNRNP40-202ENST00000373720 CHRDL2Q6WN34 429 aa12.63□□□□□ -0.39
SNRNP40-202ENST00000373720 ADCY10Q96PN6 1610 aa12.62□□□□□ -0.39
SNRNP40-202ENST00000373720 ITSN2Q9NZM3 1697 aa12.61□□□□□ -0.39
SNRNP40-202ENST00000373720 RSPH4AQ5TD94 716 aa12.6□□□□□ -0.39
SNRNP40-202ENST00000373720 NAIPQ13075 1403 aa12.6□□□□□ -0.39
SNRNP40-202ENST00000373720 PLEKHD1A6NEE1 506 aa12.59□□□□□ -0.39
SNRNP40-202ENST00000373720 ABCA8O94911 1581 aa12.59□□□□□ -0.39
SNRNP40-202ENST00000373720 MAGI3Q5TCQ9 1506 aa12.58□□□□□ -0.4
SNRNP40-202ENST00000373720 ITGAEP38570 1179 aa12.58□□□□□ -0.4
SNRNP40-202ENST00000373720 GCC2Q8IWJ2 1684 aa12.57□□□□□ -0.4
SNRNP40-202ENST00000373720 MAPKBP1O60336 1514 aa12.57□□□□□ -0.4
SNRNP40-202ENST00000373720 SHROOM2Q13796 1616 aa12.56□□□□□ -0.4
SNRNP40-202ENST00000373720 FBLN2P98095 1184 aa12.56□□□□□ -0.4
SNRNP40-202ENST00000373720 PTPRGP23470 1445 aa12.55□□□□□ -0.4
SNRNP40-202ENST00000373720 CDK13Q14004 1512 aaKnown RBP12.55□□□□□ -0.4
SNRNP40-202ENST00000373720 CENPBP07199 599 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-202ENST00000373720 DNMT1P26358 1616 aaKnown RBP12.54□□□□□ -0.4
SNRNP40-202ENST00000373720 DAPK1P53355 1430 aa12.53□□□□□ -0.4
SNRNP40-202ENST00000373720 PRG4Q92954 1404 aaPredicted RBP12.53□□□□□ -0.4
SNRNP40-202ENST00000373720 ADGRL2O95490 1459 aa12.52□□□□□ -0.41
SNRNP40-202ENST00000373720 SHANK2Q9UPX8 1470 aa12.52□□□□□ -0.41
SNRNP40-202ENST00000373720 KIF14Q15058 1648 aa12.51□□□□□ -0.41
SNRNP40-202ENST00000373720 CFDP1Q9UEE9 299 aaPredicted RBP12.51□□□□□ -0.41
SNRNP40-202ENST00000373720 PTPRKQ15262 1439 aa12.51□□□□□ -0.41
SNRNP40-202ENST00000373720 PLB1Q6P1J6 1458 aa12.5□□□□□ -0.41
SNRNP40-202ENST00000373720 GPATCH8Q9UKJ3 1502 aaKnown RBP12.5□□□□□ -0.41
SNRNP40-202ENST00000373720 UHRF1BP1LA0JNW5 1464 aa12.49□□□□□ -0.41
SNRNP40-202ENST00000373720 ATP10BO94823 1461 aa12.49□□□□□ -0.41
SNRNP40-202ENST00000373720 TONSLQ96HA7 1378 aa12.48□□□□□ -0.41
SNRNP40-202ENST00000373720 PPP1R15AO75807 674 aaPredicted RBP12.48□□□□□ -0.41
SNRNP40-202ENST00000373720 PLEKHH2Q8IVE3 1493 aa12.47□□□□□ -0.41
SNRNP40-202ENST00000373720 ABCC5O15440 1437 aa12.47□□□□□ -0.41
SNRNP40-202ENST00000373720 ANKRD30AQ9BXX3 1397 aa12.47□□□□□ -0.41
SNRNP40-202ENST00000373720 SLC4A1APQ9BWU0 796 aaKnown RBP12.46□□□□□ -0.41
SNRNP40-202ENST00000373720 ABCC10Q5T3U5 1492 aa12.46□□□□□ -0.42
SNRNP40-202ENST00000373720 ARHGEF5Q12774 1597 aa12.45□□□□□ -0.42
SNRNP40-202ENST00000373720 ZBTB12Q9Y330 459 aaPredicted RBP12.45□□□□□ -0.42
SNRNP40-202ENST00000373720 CAMSAP2Q08AD1 1489 aa12.45□□□□□ -0.42
SNRNP40-202ENST00000373720 CHD1O14646 1710 aa12.45□□□□□ -0.42
SNRNP40-202ENST00000373720 ADGBQ8N7X0 1667 aa12.45□□□□□ -0.42
SNRNP40-202ENST00000373720 ABCC2Q92887 1545 aa12.44□□□□□ -0.42
SNRNP40-202ENST00000373720 AKT1S1Q96B36 256 aa12.44□□□□□ -0.42
SNRNP40-202ENST00000373720 NCOA1Q15788 1441 aa12.44□□□□□ -0.42
SNRNP40-202ENST00000373720 CLASP1Q7Z460 1538 aa12.43□□□□□ -0.42
SNRNP40-202ENST00000373720 TSPY4P0CV99 314 aa12.43□□□□□ -0.42
SNRNP40-202ENST00000373720 TSPY10P0CW01 314 aa12.43□□□□□ -0.42
SNRNP40-202ENST00000373720 FOXD4L1Q9NU39 408 aa12.43□□□□□ -0.42
SNRNP40-202ENST00000373720 ATF5Q9Y2D1 282 aaPredicted RBP12.42□□□□□ -0.42
SNRNP40-202ENST00000373720 KIAA1107Q9UPP5 1409 aa12.42□□□□□ -0.42
SNRNP40-202ENST00000373720 MPHOSPH9Q99550 1183 aa12.41□□□□□ -0.42
SNRNP40-202ENST00000373720 CROCC2H7BZ55 1655 aa12.4□□□□□ -0.42
SNRNP40-202ENST00000373720 ARAP3Q8WWN8 1544 aa12.4□□□□□ -0.42
SNRNP40-202ENST00000373720 KDM5BQ9UGL1 1544 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 CDC42BPAQ5VT25 1732 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 TRIM52Q96A61 297 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 RRP7BPQ9NSQ0 103 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 MAST1Q9Y2H9 1570 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 PREX2Q70Z35 1606 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 KDM5DQ9BY66 1539 aa12.37□□□□□ -0.43
SNRNP40-202ENST00000373720 RPRD2Q5VT52 1461 aaKnown RBP12.36□□□□□ -0.43
SNRNP40-202ENST00000373720 CCDC141Q6ZP82 1450 aa12.35□□□□□ -0.43
SNRNP40-202ENST00000373720 ANKRD30BQ9BXX2 1392 aa12.35□□□□□ -0.43
SNRNP40-202ENST00000373720 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
SNRNP40-202ENST00000373720 C9orf84Q5VXU9 1444 aa12.35□□□□□ -0.43
SNRNP40-202ENST00000373720 ANKRD50Q9ULJ7 1429 aa12.35□□□□□ -0.43
SNRNP40-202ENST00000373720 SIN3AQ96ST3 1273 aa12.34□□□□□ -0.43
SNRNP40-202ENST00000373720 CHIC2Q9UKJ5 165 aa12.34□□□□□ -0.43
SNRNP40-202ENST00000373720 MBD5Q9P267 1494 aa12.33□□□□□ -0.44
SNRNP40-202ENST00000373720 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
SNRNP40-202ENST00000373720 PLCH2O75038 1416 aa12.31□□□□□ -0.44
SNRNP40-202ENST00000373720 EFCAB2Q5VUJ9 269 aa12.31□□□□□ -0.44
SNRNP40-202ENST00000373720 SP7Q8TDD2 431 aaPredicted RBP12.3□□□□□ -0.44
SNRNP40-202ENST00000373720 ZNF644Q9H582 1327 aaPredicted RBP12.3□□□□□ -0.44
SNRNP40-202ENST00000373720 RTEL1-TNFRSF6BF6WH68 1400 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 MYO5CQ9NQX4 1742 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 OSCARQ8IYS5 282 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 MIER1Q8N108 512 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 STAC3Q96MF2 364 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 PLXNC1O60486 1568 aa12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 ARID4BQ4LE39 1312 aaPredicted RBP12.29□□□□□ -0.44
SNRNP40-202ENST00000373720 DENND4BO75064 1496 aaPredicted RBP12.28□□□□□ -0.44
SNRNP40-202ENST00000373720 WDR7Q9Y4E6 1490 aa12.28□□□□□ -0.44
SNRNP40-202ENST00000373720 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.28□□□□□ -0.44
SNRNP40-202ENST00000373720 ARID3CA6NKF2 412 aa12.28□□□□□ -0.44
SNRNP40-202ENST00000373720 CCER2I3L3R5 266 aa12.28□□□□□ -0.44
SNRNP40-202ENST00000373720 ARHGEF12Q9NZN5 1544 aa12.27□□□□□ -0.44
SNRNP40-202ENST00000373720 EIF4G2P78344 907 aaKnown RBP eCLIP12.27□□□□□ -0.45
SNRNP40-202ENST00000373720 ZNF777Q9ULD5 760 aaPredicted RBP12.27□□□□□ -0.45
SNRNP40-202ENST00000373720 KIF15Q9NS87 1388 aa12.27□□□□□ -0.45
SNRNP40-202ENST00000373720 ERBINQ96RT1 1412 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms